Wall clock time and date at job start Tue Mar 31 2020 23:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 O 1.21287 * 119.99710 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00631 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00036 * 180.02562 * 7 5 4 9 9 C 1.53938 * 113.73014 * 253.76473 * 8 7 5 10 10 N 1.48194 * 86.10092 * 221.95877 * 9 8 7 11 11 C 1.46895 * 111.07028 * 137.52256 * 10 9 8 12 12 C 1.50702 * 109.47050 * 90.56798 * 11 10 9 13 13 O 1.21299 * 120.00120 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00077 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99981 * 179.97438 * 14 12 11 16 16 H 1.07992 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99894 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47180 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46977 * 119.99973 * 19 17 15 22 22 H 1.48496 * 109.47141 * 239.99798 * 19 17 15 23 23 C 1.47959 * 90.79486 * 24.60393 * 10 9 8 24 24 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 25 25 H 1.09002 * 110.32908 * 187.25180 * 24 2 1 26 26 C 1.54469 * 110.37219 * 64.99801 * 24 2 1 27 27 C 1.54512 * 104.06394 * 217.19151 * 26 24 2 28 28 C 1.54478 * 104.06107 * 359.97438 * 27 26 24 29 29 O 1.44423 * 110.37064 * 309.61680 * 24 2 1 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 35 35 H 0.96996 * 119.99210 * 0.02562 * 7 5 4 36 36 H 1.09002 * 112.93937 * 25.33299 * 8 7 5 37 37 H 1.08992 * 113.76506 * 336.24484 * 9 8 7 38 38 H 1.09002 * 113.75323 * 107.61042 * 9 8 7 39 39 H 1.08995 * 109.47338 * 210.56972 * 11 10 9 40 40 H 1.09004 * 109.47351 * 330.57064 * 11 10 9 41 41 H 0.96997 * 119.99756 * 0.02562 * 14 12 11 42 42 H 0.97004 * 119.99742 * 179.97438 * 18 17 15 43 43 H 1.09000 * 113.75829 * 221.08189 * 23 10 9 44 44 H 1.08997 * 113.75856 * 89.72187 * 23 10 9 45 45 H 1.09001 * 110.51469 * 335.83530 * 26 24 2 46 46 H 1.09004 * 110.51417 * 98.41139 * 26 24 2 47 47 H 1.08999 * 110.51420 * 118.64658 * 27 26 24 48 48 H 1.09004 * 110.51155 * 241.21791 * 27 26 24 49 49 H 1.08997 * 110.37338 * 142.80847 * 28 27 26 50 50 H 1.08999 * 110.37439 * 265.15020 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7002 8 6 1.5965 0.3643 4.8933 9 6 2.7646 1.1148 5.5581 10 7 2.1913 0.6592 6.8465 11 6 3.2457 0.2026 7.7617 12 6 3.7163 1.3606 8.6034 13 8 3.2223 2.4585 8.4552 14 7 4.6869 1.1767 9.5203 15 6 5.1154 2.2304 10.2857 16 1 4.6755 3.2077 10.1537 17 6 6.1164 2.0408 11.2307 18 7 6.6520 0.8516 11.3909 19 14 6.7007 3.4765 12.2731 20 1 5.9433 4.6986 11.9015 21 1 6.4731 3.1710 13.7084 22 1 8.1497 3.7011 12.0385 23 6 1.5395 -0.4867 6.1748 24 6 2.0400 -0.7212 -1.2494 25 1 3.1222 -0.8424 -1.2013 26 6 1.6422 0.0600 -2.5212 27 6 1.3101 -1.0431 -3.5509 28 6 1.5472 -2.3603 -2.7794 29 8 1.3936 -2.0053 -1.3877 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 2.4885 -1.2159 3.7906 36 1 0.7115 0.9809 4.7363 37 1 3.7431 0.6883 5.3375 38 1 2.7289 2.1952 5.4179 39 1 2.8510 -0.5804 8.4090 40 1 4.0826 -0.1907 7.1845 41 1 5.0828 0.2991 9.6381 42 1 7.3511 0.7193 12.0503 43 1 0.5267 -0.6837 6.5263 44 1 2.1589 -1.3827 6.1349 45 1 0.7665 0.6803 -2.3303 46 1 2.4742 0.6723 -2.8693 47 1 0.2703 -0.9682 -3.8690 48 1 1.9771 -0.9766 -4.4105 49 1 0.8050 -3.1059 -3.0645 50 1 2.5536 -2.7343 -2.9674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753392975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:24 Heat of formation + Delta-G solvation = -116.327272 kcal Electronic energy + Delta-G solvation = -28923.062390 eV Core-core repulsion = 24756.941370 eV Total energy + Delta-G solvation = -4166.121020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62877 -40.78918 -40.07033 -39.35977 -35.97707 -35.61580 -34.99869 -33.28940 -32.91461 -31.31611 -29.52547 -28.45632 -27.24551 -27.10008 -25.30897 -24.35987 -22.44747 -21.58940 -21.28050 -20.98799 -20.58783 -19.90452 -18.15645 -17.90206 -17.55574 -17.23851 -16.74390 -16.67575 -16.45907 -16.44363 -16.08591 -15.86852 -15.66238 -15.25558 -14.90673 -14.70900 -14.40980 -14.28710 -14.15562 -13.74024 -13.59889 -13.51387 -13.23891 -13.01313 -12.75414 -12.64822 -12.51076 -12.44088 -12.38020 -12.27251 -12.13185 -12.07786 -11.86542 -11.76726 -11.66229 -11.51037 -11.31247 -10.77420 -10.60814 -10.38370 -10.06660 -10.00873 -9.68639 -8.47386 -5.95797 1.35718 1.40884 1.55053 1.66224 2.05718 2.10511 2.29794 2.81488 3.01118 3.18925 3.30324 3.55117 3.61649 3.73180 3.81005 3.86769 4.06551 4.09159 4.10536 4.13467 4.28367 4.29546 4.39036 4.42397 4.43989 4.52684 4.53344 4.68329 4.72335 4.76598 4.79503 4.81570 4.88909 4.94606 4.99957 5.01667 5.04002 5.18496 5.25601 5.36031 5.37717 5.40623 5.43614 5.56863 5.86794 5.99064 6.06791 6.58960 6.61098 7.13408 7.31382 7.56751 8.14117 8.70215 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.001575 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.983508 B =17771.489811 C =17932.744069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.510 3.490 6 O -0.577 6.577 7 N -0.709 5.709 8 C 0.132 3.868 9 C -0.004 4.004 10 N -0.485 5.485 11 C 0.028 3.972 12 C 0.439 3.561 13 O -0.622 6.622 14 N -0.575 5.575 15 C -0.335 4.335 16 H 0.075 0.925 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.992 3.008 20 H -0.276 1.276 21 H -0.270 1.270 22 H -0.269 1.269 23 C 0.009 3.991 24 C 0.080 3.920 25 H 0.082 0.918 26 C -0.157 4.157 27 C -0.152 4.152 28 C 0.039 3.961 29 O -0.386 6.386 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.418 0.582 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -13.565 -29.017 32.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 H 0.097 0.903 4 C -0.166 4.166 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.361 5.361 8 C 0.026 3.974 9 C -0.134 4.134 10 N -0.208 5.208 11 C -0.104 4.104 12 C 0.226 3.774 13 O -0.508 6.508 14 N -0.213 5.213 15 C -0.464 4.464 16 H 0.093 0.907 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.201 1.201 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.120 4.120 24 C 0.023 3.977 25 H 0.100 0.900 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.038 4.038 29 O -0.306 6.306 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.256 0.744 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.974 -11.865 -28.480 31.866 hybrid contribution 1.375 -0.179 0.455 1.459 sum -6.599 -12.044 -28.025 31.209 Atomic orbital electron populations 1.21777 0.94956 1.01581 1.01538 1.20916 0.96810 0.98810 0.92158 0.90348 1.21735 1.04251 1.00372 0.90277 1.21335 0.77908 0.85211 0.85640 1.90686 1.41415 1.26456 1.87107 1.45950 1.57557 1.27892 1.04729 1.22596 0.97290 0.93831 0.83700 1.24504 0.98336 1.01193 0.89407 1.68302 1.21549 1.22739 1.08242 1.22344 0.95875 0.95139 0.97046 1.20909 0.82032 0.90878 0.83562 1.90503 1.59987 1.28595 1.71711 1.41931 1.34020 1.11922 1.33391 1.19674 1.18958 0.91553 1.16230 0.90733 1.25996 0.96210 1.00379 0.98512 1.69668 1.27505 1.22785 1.36051 0.84892 0.78114 0.77556 0.77890 1.20129 1.19478 1.19449 1.24455 1.02525 0.94090 0.90888 1.23078 0.96853 0.83351 0.94464 0.90034 1.23065 1.02815 0.98801 0.94813 1.22922 1.03007 0.94227 0.98857 1.23544 1.02123 0.97385 0.80739 1.89112 1.78288 1.36036 1.27164 0.93213 0.92590 0.92759 0.86994 0.86541 0.74417 0.88166 0.89644 0.92175 0.86826 0.89581 0.76909 0.91282 0.87560 0.87487 0.90952 0.89559 0.90858 0.89265 0.88551 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.51 71.98 0.61 -2.03 16 2 C -0.07 -1.06 1.89 -10.79 -0.02 -1.08 16 3 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 4 C -0.13 -1.69 5.08 29.84 0.15 -1.54 16 5 C 0.51 10.41 7.55 87.66 0.66 11.07 16 6 O -0.58 -17.09 13.59 -3.05 -0.04 -17.13 16 7 N -0.71 -12.01 5.37 -446.11 -2.40 -14.40 16 8 C 0.13 3.09 4.39 46.56 0.20 3.30 16 9 C 0.00 -0.13 7.77 86.37 0.67 0.54 16 10 N -0.49 -15.64 5.65 -912.17 -5.15 -20.79 16 11 C 0.03 0.93 5.28 85.56 0.45 1.38 16 12 C 0.44 21.44 7.83 87.66 0.69 22.12 16 13 O -0.62 -36.37 16.01 -3.09 -0.05 -36.42 16 14 N -0.57 -29.85 5.29 -306.98 -1.62 -31.47 16 15 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 16 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 17 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 18 N -0.92 -49.55 13.05 21.67 0.28 -49.26 16 19 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 C 0.01 0.19 7.70 86.41 0.67 0.85 16 24 C 0.08 0.98 2.95 31.10 0.09 1.07 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 C -0.16 -1.65 6.47 31.61 0.20 -1.45 16 27 C -0.15 -1.24 7.09 31.61 0.22 -1.02 16 28 C 0.04 0.36 7.63 72.48 0.55 0.91 16 29 O -0.39 -5.55 10.22 -148.98 -1.52 -7.07 16 30 H 0.05 1.19 5.95 -2.39 -0.01 1.17 16 31 H 0.06 1.04 7.50 -2.39 -0.02 1.02 16 32 H 0.05 0.94 6.39 -2.38 -0.02 0.93 16 33 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 34 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.42 4.07 8.71 -92.71 -0.81 3.26 16 36 H 0.10 2.87 7.51 -2.39 -0.02 2.85 16 37 H 0.09 2.23 7.49 -2.39 -0.02 2.21 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.11 3.25 8.08 -2.39 -0.02 3.23 16 40 H 0.09 2.40 7.39 -2.38 -0.02 2.38 16 41 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 42 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 44 H 0.11 1.49 7.89 -2.39 -0.02 1.47 16 45 H 0.07 0.89 6.11 -2.39 -0.01 0.88 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -78.53 401.12 -2.61 -81.15 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.58 Total: 34.44 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.44 Total: 15.42 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -8.89 Total: -115.93 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.61 Total: -60.62 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -78.53 -2.61 -81.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753392975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.179 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds