Wall clock time and date at job start Tue Mar 31 2020 23:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46547 * 2 1 4 4 C 1.52990 * 109.46971 * 239.99447 * 2 1 3 5 5 C 1.50703 * 109.47398 * 65.00163 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.53936 * 113.73270 * 251.44776 * 8 7 5 10 10 N 1.47959 * 86.18356 * 221.92311 * 9 8 7 11 11 C 1.46900 * 111.00403 * 137.58053 * 10 9 8 12 12 C 1.50704 * 109.46884 * 90.63681 * 11 10 9 13 13 O 1.21296 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99913 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00078 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99611 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00086 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47298 * 59.99798 * 19 17 15 21 21 H 1.48501 * 109.46773 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46976 * 299.99498 * 19 17 15 23 23 C 1.47964 * 90.75982 * 24.68782 * 10 9 8 24 24 C 1.52997 * 109.46902 * 119.99309 * 2 1 3 25 25 H 1.09007 * 110.32979 * 60.70163 * 24 2 1 26 26 C 1.54475 * 110.37596 * 298.45343 * 24 2 1 27 27 C 1.54509 * 104.06314 * 217.18995 * 26 24 2 28 28 C 1.54484 * 104.06438 * 359.97438 * 27 26 24 29 29 O 1.44423 * 110.37293 * 182.94736 * 24 2 1 30 30 H 1.09001 * 109.46842 * 300.00388 * 1 2 3 31 31 H 1.09001 * 109.46850 * 60.00183 * 1 2 3 32 32 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47508 * 304.99963 * 4 2 1 34 34 H 1.09002 * 109.47337 * 185.00248 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 36 36 H 1.09006 * 112.94053 * 23.15496 * 8 7 5 37 37 H 1.09003 * 113.75717 * 336.24452 * 9 8 7 38 38 H 1.08999 * 113.75748 * 107.60215 * 9 8 7 39 39 H 1.08992 * 109.47444 * 210.64275 * 11 10 9 40 40 H 1.09000 * 109.46521 * 330.64491 * 11 10 9 41 41 H 0.97003 * 119.99986 * 359.97438 * 14 12 11 42 42 H 0.96997 * 119.99890 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.75833 * 220.99163 * 23 10 9 44 44 H 1.09003 * 113.75682 * 89.63490 * 23 10 9 45 45 H 1.08997 * 110.50836 * 335.83040 * 26 24 2 46 46 H 1.09002 * 110.51668 * 98.54809 * 26 24 2 47 47 H 1.09004 * 110.51243 * 118.64382 * 27 26 24 48 48 H 1.09003 * 110.51417 * 241.21865 * 27 26 24 49 49 H 1.08998 * 110.37327 * 142.81081 * 28 27 26 50 50 H 1.09004 * 110.37128 * 265.15166 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9845 -0.3922 -3.7001 8 6 1.6022 0.3675 -4.8930 9 6 0.4951 -0.3032 -5.7262 10 7 1.2847 0.0936 -6.9128 11 6 1.3306 -0.9918 -7.9017 12 6 0.1786 -0.8452 -8.8622 13 8 -0.6034 0.0734 -8.7356 14 7 0.0172 -1.7347 -9.8617 15 6 -1.0305 -1.6011 -10.7358 16 1 -1.7263 -0.7827 -10.6236 17 6 -1.1971 -2.5185 -11.7660 18 7 -0.3502 -3.5139 -11.9028 19 14 -2.6243 -2.3360 -12.9574 20 1 -2.5234 -1.0285 -13.6541 21 1 -2.5784 -3.4337 -13.9565 22 1 -3.9052 -2.4005 -12.2089 23 6 2.5226 0.1256 -6.1029 24 6 2.0400 -0.7211 1.2493 25 1 1.6946 -1.7550 1.2573 26 6 1.5688 0.0131 2.5241 27 6 2.7650 -0.1130 3.4939 28 6 3.8173 -0.9091 2.6905 29 8 3.4824 -0.6725 1.3044 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7996 -1.2055 35 1 2.4883 -1.2162 -3.7906 36 1 1.4192 1.4217 -4.6847 37 1 0.4298 -1.3818 -5.5826 38 1 -0.4714 0.1957 -5.6549 39 1 2.2705 -0.9430 -8.4514 40 1 1.2578 -1.9519 -7.3909 41 1 0.6428 -2.4691 -9.9631 42 1 -0.4668 -4.1545 -12.6217 43 1 3.1761 0.9671 -6.3327 44 1 3.0504 -0.8275 -6.0696 45 1 1.3621 1.0611 2.3069 46 1 0.6866 -0.4728 2.9408 47 1 3.1497 0.8727 3.7561 48 1 2.4736 -0.6592 4.3910 49 1 4.8195 -0.5394 2.9072 50 1 3.7459 -1.9721 2.9207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753392978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:33 Heat of formation + Delta-G solvation = -118.416832 kcal Electronic energy + Delta-G solvation = -28900.822831 eV Core-core repulsion = 24734.611201 eV Total energy + Delta-G solvation = -4166.211630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64099 -40.76223 -40.06441 -39.37090 -35.98582 -35.77347 -35.00969 -33.28856 -32.95466 -31.31919 -29.53878 -28.40254 -27.22880 -27.10009 -25.21108 -24.21207 -22.60505 -21.55623 -21.30277 -21.01828 -20.73587 -19.90126 -18.21695 -17.92507 -17.61667 -17.14248 -16.73128 -16.71054 -16.53105 -16.39207 -16.17693 -15.81059 -15.68761 -15.20044 -14.85099 -14.61202 -14.44925 -14.31470 -14.03285 -13.73970 -13.65020 -13.49786 -13.25614 -13.02222 -12.87098 -12.72060 -12.60428 -12.44596 -12.33408 -12.22165 -12.15077 -12.12190 -11.87055 -11.77042 -11.66487 -11.50006 -11.42748 -10.77766 -10.63766 -10.38322 -10.08070 -10.00973 -9.68874 -8.46735 -5.95366 1.39226 1.40907 1.51749 1.65169 2.06055 2.10107 2.29940 2.81687 2.95911 3.19473 3.30743 3.54796 3.60733 3.71269 3.80370 3.86340 4.06036 4.07986 4.12297 4.14049 4.28159 4.28825 4.37434 4.41178 4.44786 4.50634 4.53403 4.67509 4.70091 4.72353 4.78890 4.79800 4.85771 4.94995 4.96473 5.00807 5.06599 5.17726 5.21604 5.35064 5.36440 5.39616 5.41033 5.52732 5.86749 5.97551 6.06698 6.58117 6.61415 7.13446 7.30411 7.56937 8.14321 8.70367 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.001581 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.601017 B =17701.826082 C =17815.752179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 H 0.060 0.940 4 C -0.127 4.127 5 C 0.511 3.489 6 O -0.578 6.578 7 N -0.708 5.708 8 C 0.132 3.868 9 C -0.004 4.004 10 N -0.485 5.485 11 C 0.027 3.973 12 C 0.439 3.561 13 O -0.622 6.622 14 N -0.574 5.574 15 C -0.337 4.337 16 H 0.075 0.925 17 C -0.010 4.010 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.268 1.268 22 H -0.273 1.273 23 C 0.008 3.992 24 C 0.080 3.920 25 H 0.083 0.917 26 C -0.152 4.152 27 C -0.154 4.154 28 C 0.038 3.962 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.418 0.582 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -1.797 30.600 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.167 4.167 5 C 0.300 3.700 6 O -0.457 6.457 7 N -0.361 5.361 8 C 0.025 3.975 9 C -0.134 4.134 10 N -0.208 5.208 11 C -0.104 4.104 12 C 0.226 3.774 13 O -0.508 6.508 14 N -0.212 5.212 15 C -0.466 4.466 16 H 0.093 0.907 17 C -0.210 4.210 18 N -0.559 5.559 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.192 1.192 22 H -0.199 1.199 23 C -0.120 4.120 24 C 0.023 3.977 25 H 0.101 0.899 26 C -0.190 4.190 27 C -0.192 4.192 28 C -0.038 4.038 29 O -0.314 6.314 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.256 0.744 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.035 -0.023 30.041 32.003 hybrid contribution -0.309 -1.201 -0.594 1.375 sum 10.726 -1.224 29.446 31.363 Atomic orbital electron populations 1.21879 0.93838 1.02369 1.02548 1.20854 0.96252 0.99083 0.92194 0.92116 1.21722 1.04331 1.00330 0.90300 1.21327 0.77872 0.85235 0.85614 1.90680 1.41272 1.26618 1.87150 1.45946 1.57668 1.27750 1.04731 1.22605 0.94351 0.97103 0.83432 1.24465 0.98709 1.00214 0.89989 1.68269 1.07559 1.38058 1.06895 1.22349 0.97680 0.95166 0.95227 1.20897 0.88810 0.83611 0.84087 1.90500 1.48761 1.35754 1.75790 1.41919 1.26786 1.26365 1.26131 1.19608 1.06431 1.12123 1.08454 0.90700 1.25991 1.01004 0.94784 0.99256 1.69652 1.37692 1.14823 1.33782 0.85017 0.77786 0.78110 0.77577 1.19884 1.19223 1.19851 1.24470 0.93436 1.04371 0.89772 1.23099 0.80860 0.99245 0.94512 0.89879 1.23008 0.99354 1.01613 0.94993 1.22954 0.95359 1.01664 0.99230 1.23584 0.99751 0.99946 0.80549 1.89125 1.21548 1.93363 1.27386 0.91877 0.92870 0.91614 0.86557 0.87030 0.74428 0.88119 0.89600 0.92132 0.86859 0.89561 0.76910 0.91266 0.87632 0.87500 0.91396 0.89139 0.90896 0.88989 0.88541 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.72 71.99 0.63 -1.85 16 2 C -0.06 -1.04 1.71 -10.79 -0.02 -1.05 16 3 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 4 C -0.13 -1.78 5.12 29.85 0.15 -1.63 16 5 C 0.51 10.70 7.55 87.66 0.66 11.36 16 6 O -0.58 -17.38 13.56 -3.04 -0.04 -17.42 16 7 N -0.71 -12.33 5.36 -446.11 -2.39 -14.72 16 8 C 0.13 3.12 4.43 46.55 0.21 3.32 16 9 C 0.00 -0.11 7.75 86.41 0.67 0.56 16 10 N -0.48 -15.70 5.65 -912.83 -5.16 -20.86 16 11 C 0.03 0.92 5.28 85.56 0.45 1.38 16 12 C 0.44 21.44 7.83 87.66 0.69 22.13 16 13 O -0.62 -36.36 16.01 -3.08 -0.05 -36.40 16 14 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 15 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 16 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 17 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 18 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 19 Si 0.99 43.48 29.55 68.60 2.03 45.50 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.01 0.17 7.70 86.40 0.67 0.84 16 24 C 0.08 1.00 2.80 31.09 0.09 1.09 16 25 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 26 C -0.15 -1.58 5.57 31.61 0.18 -1.40 16 27 C -0.15 -1.27 7.09 31.61 0.22 -1.05 16 28 C 0.04 0.37 7.63 72.49 0.55 0.92 16 29 O -0.39 -6.03 10.78 -148.98 -1.61 -7.63 16 30 H 0.06 0.92 7.21 -2.39 -0.02 0.90 16 31 H 0.05 1.24 5.95 -2.39 -0.01 1.22 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.36 7.67 -2.39 -0.02 1.35 16 35 H 0.42 4.27 8.73 -92.71 -0.81 3.46 16 36 H 0.10 2.92 7.46 -2.38 -0.02 2.91 16 37 H 0.09 2.23 7.48 -2.39 -0.02 2.22 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 40 H 0.09 2.41 7.38 -2.39 -0.02 2.39 16 41 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 42 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 1.52 7.90 -2.39 -0.02 1.50 16 45 H 0.07 0.85 7.73 -2.39 -0.02 0.83 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -78.72 403.27 -2.72 -81.44 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.59 Total: 34.97 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.42 Total: 15.83 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -8.89 Total: -116.29 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -1.70 Total: -61.45 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.72 -2.72 -81.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753392978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.974 kcal (2) G-P(sol) polarization free energy of solvation -78.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds