Wall clock time and date at job start Tue Mar 31 2020 23:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99962 * 2 1 4 4 H 1.09001 * 110.42364 * 357.70074 * 3 2 1 5 5 O 1.44422 * 110.37445 * 235.38497 * 3 2 1 6 6 C 1.44433 * 105.27452 * 200.65937 * 5 3 2 7 7 C 1.54479 * 104.80518 * 40.51075 * 6 5 3 8 8 C 1.54481 * 110.37036 * 120.00152 * 3 2 1 9 9 H 1.08996 * 110.51163 * 24.17035 * 8 3 2 10 10 C 1.50696 * 110.51477 * 261.45650 * 8 3 2 11 11 O 1.21280 * 119.99960 * 3.90396 * 10 8 3 12 12 N 1.34777 * 120.00208 * 183.90634 * 10 8 3 13 13 C 1.46509 * 119.99872 * 359.97438 * 12 10 8 14 14 C 1.46500 * 119.99988 * 180.02562 * 12 10 8 15 15 H 1.08997 * 109.47244 * 359.97438 * 14 12 10 16 16 C 1.53004 * 109.47120 * 119.99573 * 14 12 10 17 17 C 1.53003 * 109.46920 * 239.99282 * 14 12 10 18 18 N 1.46901 * 109.46823 * 55.00269 * 17 14 12 19 19 C 1.46897 * 110.99928 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.47073 * 179.97438 * 19 18 17 21 21 O 1.21293 * 120.00140 * 359.97438 * 20 19 18 22 22 N 1.34772 * 120.00179 * 180.02562 * 20 19 18 23 23 C 1.37098 * 120.00552 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99409 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00463 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99633 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99978 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47282 * 359.97438 * 27 25 23 29 29 H 1.48509 * 109.47182 * 119.99929 * 27 25 23 30 30 H 1.48494 * 109.47124 * 239.99714 * 27 25 23 31 31 H 1.07998 * 119.99949 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.99472 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.99949 * 180.02562 * 2 1 3 34 34 H 1.08997 * 110.37115 * 281.68143 * 6 5 3 35 35 H 1.08995 * 110.37312 * 159.34452 * 6 5 3 36 36 H 1.08991 * 110.51153 * 217.37812 * 7 6 5 37 37 H 1.08995 * 110.50884 * 94.66596 * 7 6 5 38 38 H 1.08999 * 109.46472 * 90.00610 * 13 12 10 39 39 H 1.09003 * 109.46873 * 210.00458 * 13 12 10 40 40 H 1.08993 * 109.46842 * 330.00088 * 13 12 10 41 41 H 1.09004 * 109.47243 * 60.00236 * 16 14 12 42 42 H 1.09002 * 109.46815 * 179.97438 * 16 14 12 43 43 H 1.08994 * 109.47128 * 299.99862 * 16 14 12 44 44 H 1.09001 * 109.47012 * 174.99612 * 17 14 12 45 45 H 1.08991 * 109.47348 * 295.00430 * 17 14 12 46 46 H 1.00902 * 111.00131 * 303.95220 * 18 17 14 47 47 H 1.08995 * 109.47500 * 300.00092 * 19 18 17 48 48 H 1.09003 * 109.46903 * 60.00399 * 19 18 17 49 49 H 0.97000 * 119.99675 * 0.02562 * 22 20 19 50 50 H 0.97004 * 119.99396 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3698 2.1448 -0.0410 5 8 2.9810 1.3560 -1.1142 6 6 3.9608 2.3544 -0.7550 7 6 4.2364 2.1149 0.7460 8 6 2.9595 1.4087 1.2542 9 1 3.1983 0.4161 1.6360 10 6 2.2857 2.2369 2.3176 11 8 1.1599 2.6517 2.1405 12 7 2.9342 2.5168 3.4655 13 6 4.2940 2.0153 3.6796 14 6 2.2789 3.3215 4.4995 15 1 1.2802 3.6010 4.1639 16 6 2.1742 2.5064 5.7901 17 6 3.1013 4.5852 4.7597 18 7 3.3031 5.3068 3.4962 19 6 4.0902 6.5290 3.7079 20 6 4.2768 7.2404 2.3925 21 8 3.8013 6.7749 1.3784 22 7 4.9728 8.3934 2.3428 23 6 5.1431 9.0404 1.1461 24 1 4.7190 8.6263 0.2433 25 6 5.8612 10.2289 1.0948 26 7 6.3767 10.7329 2.1935 27 14 6.0924 11.1107 -0.5356 28 1 5.4189 10.3429 -1.6136 29 1 5.5006 12.4701 -0.4515 30 1 7.5422 11.2199 -0.8380 31 1 -0.5400 0.9353 0.0004 32 1 -0.5399 -0.9354 0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 3.5580 3.3550 -0.9118 35 1 4.8733 2.2166 -1.3350 36 1 4.3803 3.0631 1.2640 37 1 5.1064 1.4715 0.8766 38 1 5.0131 2.7457 3.3087 39 1 4.4578 1.8529 4.7450 40 1 4.4227 1.0745 3.1447 41 1 3.1731 2.2273 6.1256 42 1 1.6870 3.1054 6.5596 43 1 1.5884 1.6062 5.6048 44 1 2.5698 5.2262 5.4632 45 1 4.0687 4.3092 5.1790 46 1 3.7365 4.7124 2.8055 47 1 3.5653 7.1832 4.4039 48 1 5.0646 6.2668 4.1201 49 1 5.3540 8.7651 3.1536 50 1 6.8783 11.5624 2.1575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753713770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:18 Heat of formation + Delta-G solvation = -112.721502 kcal Electronic energy + Delta-G solvation = -30927.326122 eV Core-core repulsion = 26761.361460 eV Total energy + Delta-G solvation = -4165.964662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82072 -40.24458 -39.79554 -37.94998 -36.18316 -35.58147 -34.84169 -33.90643 -33.27058 -31.95801 -29.48661 -28.99295 -27.85447 -26.70307 -25.15135 -24.46896 -23.43066 -21.89940 -21.14095 -21.03212 -20.07973 -19.87693 -18.41058 -17.90545 -17.64012 -17.33851 -17.03283 -16.70305 -16.47195 -16.13972 -16.04584 -15.82026 -15.40852 -15.04711 -14.73737 -14.70627 -14.45449 -14.38772 -14.09607 -13.98540 -13.64572 -13.54566 -13.24954 -13.13226 -13.04730 -12.99597 -12.81147 -12.68894 -12.50880 -12.41450 -12.31251 -12.13749 -12.07411 -11.94713 -11.82471 -11.53778 -10.97574 -10.72920 -10.42964 -10.39242 -10.03568 -9.69255 -9.30067 -8.49166 -5.97649 1.18122 1.34303 1.39986 1.54007 1.57573 1.94226 2.02552 2.27195 2.88689 2.95903 3.18135 3.40965 3.47979 3.49022 3.63647 3.90722 3.97863 4.03945 4.17952 4.19721 4.23848 4.28096 4.31145 4.33671 4.38544 4.45445 4.54045 4.64409 4.67326 4.69916 4.71889 4.75738 4.78078 4.84662 4.93173 4.94137 4.98963 5.11609 5.29037 5.38994 5.54073 5.60606 5.67837 5.83394 5.87412 6.09416 6.32204 6.39091 6.58147 7.10812 7.15718 7.53765 8.09768 8.68477 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003078 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.540322 B = 9096.110057 C =10794.019895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C 0.110 3.890 4 H 0.052 0.948 5 O -0.378 6.378 6 C 0.037 3.963 7 C -0.136 4.136 8 C -0.124 4.124 9 H 0.143 0.857 10 C 0.520 3.480 11 O -0.576 6.576 12 N -0.604 5.604 13 C 0.063 3.937 14 C 0.136 3.864 15 H 0.072 0.928 16 C -0.147 4.147 17 C 0.053 3.947 18 N -0.687 5.687 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.572 5.572 23 C -0.333 4.333 24 H 0.075 0.925 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.276 1.276 29 H -0.271 1.271 30 H -0.268 1.268 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.035 0.965 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.339 0.661 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -23.167 8.526 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.052 3.948 4 H 0.070 0.930 5 O -0.298 6.298 6 C -0.040 4.040 7 C -0.174 4.174 8 C -0.145 4.145 9 H 0.160 0.840 10 C 0.308 3.692 11 O -0.455 6.455 12 N -0.337 5.337 13 C -0.079 4.079 14 C 0.032 3.968 15 H 0.090 0.910 16 C -0.205 4.205 17 C -0.077 4.077 18 N -0.320 5.320 19 C -0.067 4.067 20 C 0.223 3.777 21 O -0.511 6.511 22 N -0.209 5.209 23 C -0.462 4.462 24 H 0.093 0.907 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.201 1.201 29 H -0.196 1.196 30 H -0.193 1.193 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.158 0.842 47 H 0.121 0.879 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.557 -22.869 7.661 24.253 hybrid contribution 0.966 1.134 -0.259 1.512 sum -1.590 -21.735 7.402 23.016 Atomic orbital electron populations 1.24101 0.95890 1.02731 0.97262 1.22768 0.95927 0.96754 1.02443 1.21948 0.91148 0.97105 0.84575 0.93034 1.89128 1.40723 1.59388 1.40549 1.23529 0.93090 0.91184 0.96154 1.23022 0.97475 1.01627 0.95228 1.22644 0.96058 1.01551 0.94257 0.83956 1.20670 0.85600 0.79909 0.82991 1.90680 1.21169 1.54355 1.79296 1.47880 1.17082 1.52221 1.16468 1.22181 0.80767 1.00250 1.04697 1.21156 0.96950 0.89913 0.88748 0.91004 1.22015 1.03593 0.99907 0.95002 1.22442 0.99919 0.94414 0.90883 1.59971 1.53770 1.07478 1.10747 1.21545 0.97988 0.93205 0.93921 1.20920 0.82081 0.82965 0.91705 1.90509 1.53947 1.68399 1.38210 1.41916 1.47883 1.20881 1.10208 1.19660 1.33145 1.05316 0.88104 0.90652 1.26002 0.95817 0.97076 1.02185 1.69672 1.35898 1.21763 1.28667 0.84907 0.78403 0.77887 0.77365 1.20054 1.19640 1.19255 0.89996 0.85128 0.84300 0.94701 0.86313 0.91300 0.85794 0.92776 0.88353 0.88701 0.90071 0.90041 0.92368 0.89055 0.92571 0.84222 0.87863 0.91154 0.76922 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 14.33 67.77 0.97 -2.43 16 2 C -0.16 -3.49 9.10 25.64 0.23 -3.25 16 3 C 0.11 2.98 2.96 30.35 0.09 3.07 16 4 H 0.05 1.81 6.66 -2.39 -0.02 1.79 16 5 O -0.38 -10.72 11.33 -148.98 -1.69 -12.41 16 6 C 0.04 0.95 7.63 72.48 0.55 1.50 16 7 C -0.14 -2.78 5.20 31.61 0.16 -2.61 16 8 C -0.12 -2.67 2.11 -10.52 -0.02 -2.69 16 9 H 0.14 2.05 7.22 -2.39 -0.02 2.03 16 10 C 0.52 14.13 6.90 87.66 0.60 14.74 16 11 O -0.58 -21.33 14.81 -3.03 -0.04 -21.37 16 12 N -0.60 -12.47 1.81 -822.57 -1.49 -13.97 16 13 C 0.06 0.76 8.20 127.77 1.05 1.80 16 14 C 0.14 2.91 2.95 44.99 0.13 3.04 16 15 H 0.07 2.12 6.90 -2.39 -0.02 2.11 16 16 C -0.15 -1.94 9.17 71.98 0.66 -1.28 16 17 C 0.05 1.16 5.03 86.30 0.43 1.59 16 18 N -0.69 -22.48 6.12 -517.94 -3.17 -25.64 16 19 C 0.07 2.26 6.17 85.56 0.53 2.78 16 20 C 0.44 21.11 7.82 87.66 0.69 21.80 16 21 O -0.62 -35.77 15.78 -3.07 -0.05 -35.82 16 22 N -0.57 -29.56 5.29 -306.99 -1.62 -31.19 16 23 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 24 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 25 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 26 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 27 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 30 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 31 H 0.08 2.04 7.86 -2.91 -0.02 2.02 16 32 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 1.69 6.59 -2.39 -0.02 1.68 16 37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 0.73 7.49 -2.39 -0.02 0.71 16 39 H 0.10 0.73 6.42 -2.39 -0.02 0.71 16 40 H 0.09 0.74 6.25 -2.39 -0.01 0.73 16 41 H 0.08 0.72 6.66 -2.38 -0.02 0.70 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.06 0.95 7.84 -2.39 -0.02 0.93 16 46 H 0.34 11.82 7.35 -89.69 -0.66 11.16 16 47 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.40 19.33 7.90 -92.71 -0.73 18.59 16 50 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -79.58 403.70 1.17 -78.41 By element: Atomic # 1 Polarization: 46.68 SS G_CDS: -0.44 Total: 46.25 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 7.36 Total: 19.62 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -6.00 Total: -120.08 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -1.78 Total: -69.60 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.58 1.17 -78.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753713770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.316 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds