Wall clock time and date at job start Tue Mar 31 2020 23:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 C 1.53007 * 109.46900 * 119.99453 * 2 1 3 5 5 C 1.50698 * 109.46857 * 295.00348 * 4 2 1 6 6 O 1.21282 * 120.00663 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99785 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99912 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46984 * 180.02562 * 8 7 5 10 10 O 1.42904 * 112.93753 * 53.43298 * 9 8 7 11 11 C 1.53939 * 113.73362 * 281.73025 * 9 8 7 12 12 N 1.47956 * 86.17796 * 221.92237 * 11 9 8 13 13 C 1.46900 * 111.00021 * 137.58519 * 12 11 9 14 14 C 1.50698 * 109.47161 * 70.63598 * 13 12 11 15 15 O 1.21294 * 120.00140 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99604 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99606 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00113 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99525 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47148 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46825 * 120.00299 * 21 19 17 24 24 H 1.48497 * 109.47174 * 239.99614 * 21 19 17 25 25 C 1.47956 * 90.76510 * 24.68698 * 12 11 9 26 26 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 27 27 C 1.53000 * 117.50008 * 128.62226 * 26 2 1 28 28 C 1.52997 * 60.00347 * 252.51154 * 27 26 2 29 29 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 30 30 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47184 * 55.00349 * 4 2 1 33 33 H 1.08994 * 109.46789 * 175.00645 * 4 2 1 34 34 H 0.97003 * 120.00106 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47295 * 300.00217 * 8 7 5 36 36 H 1.08994 * 109.46981 * 60.00699 * 8 7 5 37 37 H 0.96701 * 113.99648 * 309.66854 * 10 9 8 38 38 H 1.09001 * 113.75617 * 336.24078 * 11 9 8 39 39 H 1.08993 * 113.75945 * 107.59803 * 11 9 8 40 40 H 1.09002 * 109.47083 * 190.63562 * 13 12 11 41 41 H 1.08993 * 109.46784 * 310.63621 * 13 12 11 42 42 H 0.96999 * 120.00366 * 359.97438 * 16 14 13 43 43 H 0.97006 * 119.99478 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.76200 * 220.99626 * 25 12 11 45 45 H 1.09001 * 113.75669 * 89.62887 * 25 12 11 46 46 H 1.09004 * 115.56709 * 274.30959 * 26 2 1 47 47 H 1.09002 * 117.49696 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.50343 * 145.02258 * 27 26 2 49 49 H 1.08999 * 117.49685 * 252.51237 * 28 27 26 50 50 H 1.08999 * 117.52022 * 107.47599 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6411 0.0572 2.4766 6 8 1.0107 1.0871 2.3633 7 7 1.9842 -0.3916 3.7003 8 6 1.5970 0.3654 4.8933 9 6 2.1069 -0.3558 6.1427 10 8 3.5080 -0.6326 6.0932 11 6 1.2481 -1.5656 6.5535 12 7 1.4165 -1.0876 7.9436 13 6 0.1536 -1.1791 8.6884 14 6 -0.1719 -2.6272 8.9493 15 8 0.5749 -3.4974 8.5541 16 7 -1.2929 -2.9552 9.6218 17 6 -1.5888 -4.2726 9.8596 18 1 -0.9238 -5.0475 9.5077 19 6 -2.7447 -4.6109 10.5524 20 7 -3.5541 -3.6681 10.9801 21 14 -3.1483 -6.4059 10.8759 22 1 -2.0845 -7.2647 10.2960 23 1 -3.2286 -6.6390 12.3403 24 1 -4.4522 -6.7409 10.2491 25 6 1.6494 0.2919 7.4620 26 6 2.0400 -0.7213 -1.2491 27 6 3.0742 0.0050 -2.1115 28 6 1.6358 -0.1496 -2.6095 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2954 33 1 3.1262 -0.7993 1.2058 34 1 2.4881 -1.2155 3.7910 35 1 2.0323 1.3636 4.8474 36 1 0.5108 0.4443 4.9368 37 1 3.7947 -1.0660 5.2777 38 1 0.2203 -1.5170 6.1938 39 1 1.7228 -2.5273 6.3592 40 1 0.2526 -0.6522 9.6375 41 1 -0.6468 -0.7265 8.1032 42 1 -1.8899 -2.2593 9.9381 43 1 -4.3613 -3.9043 11.4634 44 1 2.4448 0.8143 7.9936 45 1 0.7390 0.8838 7.3681 46 1 2.1272 -1.8045 -1.1641 47 1 3.3915 0.9966 -1.7888 48 1 3.8417 -0.6002 -2.5940 49 1 1.4570 -0.8568 -3.4195 50 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754778688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:46 Heat of formation + Delta-G solvation = -64.799790 kcal Electronic energy + Delta-G solvation = -29204.663012 eV Core-core repulsion = 25040.776391 eV Total energy + Delta-G solvation = -4163.886621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80597 -39.93399 -38.23144 -37.88700 -35.86978 -34.51890 -33.90200 -33.49623 -31.31511 -30.44555 -28.67127 -26.91973 -26.17816 -24.94480 -23.96053 -22.63545 -22.45107 -20.87214 -20.11114 -19.98721 -19.22270 -17.99681 -17.73451 -16.81296 -16.50759 -16.03413 -15.76175 -15.71119 -15.50313 -15.23142 -14.85139 -14.54466 -14.38828 -13.96830 -13.80311 -13.60066 -13.48452 -13.32795 -13.12995 -13.02899 -12.47143 -12.23760 -12.05752 -11.95862 -11.89912 -11.68360 -11.51553 -11.45834 -11.31214 -11.10032 -11.05560 -10.77939 -10.68110 -10.36228 -10.27872 -10.24881 -9.97416 -9.95681 -9.53519 -9.39913 -8.68322 -8.25751 -7.98590 -6.43897 -3.84738 2.37282 2.77956 3.14525 3.25245 3.32296 3.42150 3.65818 3.86923 3.97381 4.14935 4.20056 4.26820 4.34680 4.52179 4.54065 4.58817 4.75761 4.85455 4.90166 5.05302 5.08611 5.19429 5.22085 5.26385 5.27748 5.33307 5.42382 5.47124 5.49919 5.53078 5.60561 5.63004 5.67148 5.74908 5.76305 5.82129 5.86602 5.99657 6.05647 6.11535 6.20939 6.22966 6.56261 7.08744 7.13893 7.40953 7.53229 7.92996 8.03501 8.58907 9.15751 9.51697 10.03205 10.73894 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.001966 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.834053 B =14242.096026 C =15416.473727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.535 6.535 7 N -0.731 5.731 8 C 0.101 3.899 9 C 0.088 3.912 10 O -0.521 6.521 11 C 0.000 4.000 12 N -0.440 5.440 13 C 0.007 3.993 14 C 0.444 3.556 15 O -0.579 6.579 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.017 3.983 26 C -0.150 4.150 27 C -0.182 4.182 28 C -0.178 4.178 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.371 0.629 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 9.874 -21.816 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.302 3.698 6 O -0.411 6.411 7 N -0.385 5.385 8 C -0.023 4.023 9 C 0.045 3.955 10 O -0.326 6.326 11 C -0.129 4.129 12 N -0.163 5.163 13 C -0.125 4.125 14 C 0.229 3.771 15 O -0.463 6.463 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.112 4.112 26 C -0.168 4.168 27 C -0.219 4.219 28 C -0.215 4.215 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.233 0.767 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.218 0.782 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.840 9.970 -20.991 25.642 hybrid contribution -1.175 -0.797 -0.405 1.477 sum 9.665 9.172 -21.396 25.206 Atomic orbital electron populations 1.21939 0.94280 1.01707 1.02981 1.20448 0.96499 0.98842 0.90432 0.90392 1.21741 1.03110 1.00382 0.92341 1.20724 0.78929 0.85695 0.84451 1.90687 1.39343 1.24582 1.86535 1.45961 1.58635 1.27876 1.05995 1.22017 1.01066 0.95984 0.83268 1.23055 0.82721 0.96140 0.93576 1.86639 1.20731 1.81850 1.43362 1.24514 0.99120 0.99408 0.89878 1.68467 1.29129 1.07611 1.11069 1.22512 0.91711 0.97821 1.00443 1.19653 0.83683 0.89297 0.84486 1.90521 1.50227 1.50023 1.55512 1.41876 1.20318 1.08756 1.49133 1.19745 1.06323 0.83635 1.33110 0.87884 1.25272 0.95875 0.99930 0.96922 1.69624 1.13420 1.32765 1.38453 0.85797 0.78385 0.82089 0.78056 1.19230 1.20713 1.20764 1.24121 1.01079 0.93565 0.92434 1.22363 1.03679 0.99173 0.91614 1.23038 0.92544 1.02074 1.04241 1.22926 0.98046 1.03390 0.97127 0.90658 0.92833 0.93130 0.88567 0.88640 0.76654 0.90371 0.90167 0.78170 0.90854 0.88281 0.88907 0.92752 0.77488 0.91908 0.88147 0.89902 0.87728 0.88803 0.88931 0.88898 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.77 37.16 0.33 -0.99 16 2 C -0.04 -0.33 2.19 -90.62 -0.20 -0.53 16 3 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 4 C -0.14 -0.88 5.16 -27.88 -0.14 -1.03 16 5 C 0.51 4.86 7.55 -10.99 -0.08 4.78 16 6 O -0.53 -7.01 13.96 5.56 0.08 -6.94 16 7 N -0.73 -5.93 5.34 -60.29 -0.32 -6.25 16 8 C 0.10 0.99 5.28 -4.04 -0.02 0.96 16 9 C 0.09 0.99 1.52 -89.69 -0.14 0.85 16 10 O -0.52 -5.96 13.51 -35.23 -0.48 -6.43 16 11 C 0.00 0.00 6.16 -2.77 -0.02 -0.02 16 12 N -0.44 -7.33 5.95 -239.67 -1.43 -8.76 16 13 C 0.01 0.13 5.31 -4.98 -0.03 0.10 16 14 C 0.44 10.49 7.59 -10.99 -0.08 10.41 16 15 O -0.58 -15.67 15.13 5.55 0.08 -15.58 16 16 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 21 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.02 0.21 7.38 -2.77 -0.02 0.19 16 26 C -0.15 -0.95 5.15 -90.62 -0.47 -1.41 16 27 C -0.18 -1.08 10.18 -26.73 -0.27 -1.35 16 28 C -0.18 -1.10 9.74 -26.73 -0.26 -1.36 16 29 H 0.07 0.82 5.95 -51.93 -0.31 0.52 16 30 H 0.05 0.43 7.29 -51.93 -0.38 0.06 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 2.28 7.31 -40.82 -0.30 1.98 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.37 2.69 7.61 45.56 0.35 3.04 16 38 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 39 H 0.10 1.61 8.09 -51.93 -0.42 1.19 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 0.86 7.75 -51.93 -0.40 0.45 16 46 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 47 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.60 7.61 -51.93 -0.39 0.21 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -34.75 407.60 -9.45 -44.19 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.53 Total: 13.14 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.64 Total: 2.63 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -1.08 Total: -53.15 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.31 Total: -28.95 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.75 -9.45 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754778688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.606 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds