Wall clock time and date at job start Tue Mar 31 2020 23:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46621 * 2 1 4 4 C 1.53007 * 109.46900 * 119.99453 * 2 1 3 5 5 C 1.50698 * 109.46857 * 295.00348 * 4 2 1 6 6 O 1.21282 * 120.00663 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99785 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99912 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46984 * 180.02562 * 8 7 5 10 10 O 1.42904 * 112.93753 * 53.43298 * 9 8 7 11 11 C 1.53939 * 113.73362 * 281.73025 * 9 8 7 12 12 N 1.47956 * 86.17796 * 221.92237 * 11 9 8 13 13 C 1.46900 * 111.00021 * 137.58519 * 12 11 9 14 14 C 1.50698 * 109.47161 * 70.63598 * 13 12 11 15 15 O 1.21294 * 120.00140 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99604 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99606 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00113 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99525 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47148 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46825 * 120.00299 * 21 19 17 24 24 H 1.48497 * 109.47174 * 239.99614 * 21 19 17 25 25 C 1.47956 * 90.76510 * 24.68698 * 12 11 9 26 26 C 1.52989 * 109.47436 * 239.99453 * 2 1 3 27 27 C 1.53000 * 117.50008 * 128.62226 * 26 2 1 28 28 C 1.52997 * 60.00347 * 252.51154 * 27 26 2 29 29 H 1.09001 * 109.47711 * 300.00528 * 1 2 3 30 30 H 1.09006 * 109.46996 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47184 * 55.00349 * 4 2 1 33 33 H 1.08994 * 109.46789 * 175.00645 * 4 2 1 34 34 H 0.97003 * 120.00106 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47295 * 300.00217 * 8 7 5 36 36 H 1.08994 * 109.46981 * 60.00699 * 8 7 5 37 37 H 0.96701 * 113.99648 * 309.66854 * 10 9 8 38 38 H 1.09001 * 113.75617 * 336.24078 * 11 9 8 39 39 H 1.08993 * 113.75945 * 107.59803 * 11 9 8 40 40 H 1.09002 * 109.47083 * 190.63562 * 13 12 11 41 41 H 1.08993 * 109.46784 * 310.63621 * 13 12 11 42 42 H 0.96999 * 120.00366 * 359.97438 * 16 14 13 43 43 H 0.97006 * 119.99478 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.76200 * 220.99626 * 25 12 11 45 45 H 1.09001 * 113.75669 * 89.62887 * 25 12 11 46 46 H 1.09004 * 115.56709 * 274.30959 * 26 2 1 47 47 H 1.09002 * 117.49696 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.50343 * 145.02258 * 27 26 2 49 49 H 1.08999 * 117.49685 * 252.51237 * 28 27 26 50 50 H 1.08999 * 117.52022 * 107.47599 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6411 0.0572 2.4766 6 8 1.0107 1.0871 2.3633 7 7 1.9842 -0.3916 3.7003 8 6 1.5970 0.3654 4.8933 9 6 2.1069 -0.3558 6.1427 10 8 3.5080 -0.6326 6.0932 11 6 1.2481 -1.5656 6.5535 12 7 1.4165 -1.0876 7.9436 13 6 0.1536 -1.1791 8.6884 14 6 -0.1719 -2.6272 8.9493 15 8 0.5749 -3.4974 8.5541 16 7 -1.2929 -2.9552 9.6218 17 6 -1.5888 -4.2726 9.8596 18 1 -0.9238 -5.0475 9.5077 19 6 -2.7447 -4.6109 10.5524 20 7 -3.5541 -3.6681 10.9801 21 14 -3.1483 -6.4059 10.8759 22 1 -2.0845 -7.2647 10.2960 23 1 -3.2286 -6.6390 12.3403 24 1 -4.4522 -6.7409 10.2491 25 6 1.6494 0.2919 7.4620 26 6 2.0400 -0.7213 -1.2491 27 6 3.0742 0.0050 -2.1115 28 6 1.6358 -0.1496 -2.6095 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2954 33 1 3.1262 -0.7993 1.2058 34 1 2.4881 -1.2155 3.7910 35 1 2.0323 1.3636 4.8474 36 1 0.5108 0.4443 4.9368 37 1 3.7947 -1.0660 5.2777 38 1 0.2203 -1.5170 6.1938 39 1 1.7228 -2.5273 6.3592 40 1 0.2526 -0.6522 9.6375 41 1 -0.6468 -0.7265 8.1032 42 1 -1.8899 -2.2593 9.9381 43 1 -4.3613 -3.9043 11.4634 44 1 2.4448 0.8143 7.9936 45 1 0.7390 0.8838 7.3681 46 1 2.1272 -1.8045 -1.1641 47 1 3.3915 0.9966 -1.7888 48 1 3.8417 -0.6002 -2.5940 49 1 1.4570 -0.8568 -3.4195 50 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754778688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:45 Heat of formation + Delta-G solvation = -93.756132 kcal Electronic energy + Delta-G solvation = -29205.918654 eV Core-core repulsion = 25040.776391 eV Total energy + Delta-G solvation = -4165.142262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82605 -40.80320 -39.75073 -38.69966 -36.94407 -35.90727 -35.32442 -34.09224 -33.31828 -31.63439 -29.59919 -27.95037 -27.26979 -26.63573 -24.73397 -23.62699 -23.08648 -21.59212 -21.04145 -20.98102 -20.62873 -19.90694 -18.62506 -17.89732 -17.59662 -17.15317 -16.73294 -16.72766 -16.50527 -16.37678 -16.15050 -15.76876 -15.46939 -15.34423 -14.99128 -14.74715 -14.36046 -14.20074 -14.12966 -13.95793 -13.69550 -13.49367 -13.41873 -13.04962 -12.94836 -12.89159 -12.48185 -12.42407 -12.42285 -12.23111 -12.13411 -12.03997 -11.81275 -11.71202 -11.52555 -11.18614 -10.96240 -10.78934 -10.71375 -10.36204 -10.16945 -10.03378 -9.69142 -8.48593 -5.97352 1.35093 1.40517 1.54658 1.65283 2.02346 2.07780 2.27197 2.67180 2.92690 2.94519 3.18025 3.25184 3.33099 3.55703 3.69222 3.76321 3.99687 4.04288 4.10649 4.20021 4.25812 4.27675 4.38083 4.40990 4.46073 4.52214 4.55617 4.61303 4.64875 4.70272 4.74797 4.77589 4.83178 4.92895 4.96822 5.02770 5.08387 5.25868 5.28545 5.30595 5.36338 5.39991 5.45461 5.53307 5.84057 6.03571 6.46047 6.57906 6.69437 7.10731 7.23638 7.53619 8.09144 8.69010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.001966 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.834053 B =14242.096026 C =15416.473727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 H 0.060 0.940 4 C -0.130 4.130 5 C 0.512 3.488 6 O -0.575 6.575 7 N -0.723 5.723 8 C 0.111 3.889 9 C 0.114 3.886 10 O -0.535 6.535 11 C -0.005 4.005 12 N -0.475 5.475 13 C 0.020 3.980 14 C 0.440 3.560 15 O -0.618 6.618 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.020 3.980 26 C -0.149 4.149 27 C -0.180 4.180 28 C -0.184 4.184 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.412 0.588 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.389 0.611 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.101 0.899 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 9.877 -22.610 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 H 0.079 0.921 4 C -0.169 4.169 5 C 0.300 3.700 6 O -0.455 6.455 7 N -0.377 5.377 8 C -0.014 4.014 9 C 0.071 3.929 10 O -0.342 6.342 11 C -0.134 4.134 12 N -0.198 5.198 13 C -0.112 4.112 14 C 0.228 3.772 15 O -0.504 6.504 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.109 4.109 26 C -0.167 4.167 27 C -0.216 4.216 28 C -0.221 4.221 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.239 0.761 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.135 0.865 47 H 0.108 0.892 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.370 9.977 -21.788 26.524 hybrid contribution -1.286 -0.773 -0.179 1.511 sum 10.084 9.204 -21.967 25.864 Atomic orbital electron populations 1.21890 0.95393 1.01644 1.01725 1.20377 0.95531 0.98330 0.91741 0.92125 1.21774 1.04683 1.00307 0.90167 1.21254 0.78093 0.85299 0.85315 1.90679 1.41216 1.26494 1.87092 1.45885 1.58315 1.28144 1.05318 1.21813 1.00592 0.95930 0.83020 1.22698 0.82277 0.93982 0.93928 1.86605 1.20507 1.82060 1.45031 1.24493 0.99649 0.99724 0.89522 1.68445 1.28453 1.10754 1.12103 1.22402 0.93379 0.93316 1.02091 1.20714 0.82295 0.91679 0.82553 1.90488 1.51195 1.52115 1.56587 1.41948 1.21171 1.08100 1.49896 1.19687 1.07052 0.84477 1.34977 0.90365 1.26052 0.95185 1.04058 0.96051 1.69682 1.13661 1.34397 1.38366 0.84866 0.78170 0.77010 0.78261 1.19792 1.19644 1.19514 1.24248 1.02388 0.91779 0.92469 1.22336 1.03893 0.99637 0.90878 1.23087 0.92619 1.02046 1.03888 1.22983 0.98303 1.03423 0.97435 0.93156 0.92823 0.92515 0.86878 0.86168 0.75115 0.90153 0.90795 0.76094 0.90978 0.90614 0.87279 0.90196 0.77020 0.91296 0.87570 0.87431 0.86498 0.89183 0.87791 0.88050 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.77 71.98 0.63 -1.93 16 2 C -0.04 -0.58 2.19 -10.80 -0.02 -0.60 16 3 H 0.06 1.07 7.71 -2.39 -0.02 1.05 16 4 C -0.13 -1.44 5.16 29.85 0.15 -1.28 16 5 C 0.51 9.06 7.55 87.66 0.66 9.72 16 6 O -0.58 -14.99 13.96 -3.04 -0.04 -15.03 16 7 N -0.72 -10.53 5.34 -463.05 -2.47 -13.00 16 8 C 0.11 1.99 5.28 86.38 0.46 2.45 16 9 C 0.11 2.38 1.52 -10.15 -0.02 2.37 16 10 O -0.54 -11.25 13.51 -148.98 -2.01 -13.26 16 11 C 0.00 -0.13 6.16 86.41 0.53 0.40 16 12 N -0.47 -15.34 5.95 -915.39 -5.44 -20.78 16 13 C 0.02 0.68 5.31 85.56 0.45 1.13 16 14 C 0.44 21.08 7.59 87.66 0.67 21.75 16 15 O -0.62 -34.34 15.13 -3.07 -0.05 -34.39 16 16 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 17 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 18 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 21 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 C 0.02 0.44 7.38 86.40 0.64 1.08 16 26 C -0.15 -1.62 5.15 -10.80 -0.06 -1.68 16 27 C -0.18 -1.84 10.18 30.59 0.31 -1.52 16 28 C -0.18 -2.06 9.74 30.60 0.30 -1.76 16 29 H 0.05 1.13 5.95 -2.39 -0.01 1.12 16 30 H 0.05 0.88 7.29 -2.38 -0.02 0.86 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.41 3.85 7.31 -92.71 -0.68 3.17 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 37 H 0.39 4.83 7.61 -74.06 -0.56 4.27 16 38 H 0.07 2.06 7.67 -2.39 -0.02 2.05 16 39 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.08 2.34 7.69 -2.39 -0.02 2.32 16 42 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 43 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 44 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.11 1.91 7.75 -2.39 -0.02 1.89 16 46 H 0.12 1.01 8.11 -2.38 -0.02 0.99 16 47 H 0.09 0.99 8.05 -2.39 -0.02 0.97 16 48 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.09 1.09 7.61 -2.39 -0.02 1.07 16 Total: -1.00 -76.60 407.60 -4.34 -80.94 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -1.00 Total: 39.42 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.99 Total: 11.72 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -9.25 Total: -114.40 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -2.10 Total: -62.68 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.60 -4.34 -80.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754778688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.816 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds