Wall clock time and date at job start Tue Mar 31 2020 23:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99812 * 2 1 4 4 H 1.08998 * 109.47309 * 29.99686 * 3 2 1 5 5 C 1.53003 * 109.47244 * 269.99631 * 3 2 1 6 6 C 1.53005 * 109.47349 * 149.99702 * 3 2 1 7 7 C 1.50704 * 109.47048 * 294.99959 * 6 3 2 8 8 O 1.21282 * 119.99773 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00212 * 179.97438 * 7 6 3 10 10 C 1.46494 * 125.29070 * 179.97438 * 9 7 6 11 11 C 1.53804 * 108.30632 * 178.09408 * 10 9 7 12 12 H 1.08996 * 112.68539 * 109.41516 * 11 10 9 13 13 C 1.54191 * 108.41640 * 234.83466 * 11 10 9 14 14 N 1.47829 * 107.26603 * 111.90019 * 13 11 10 15 15 C 1.46894 * 111.00137 * 214.65410 * 14 13 11 16 16 C 1.50703 * 109.47518 * 287.46349 * 15 14 13 17 17 O 1.21292 * 119.99359 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00022 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99747 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00139 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00060 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00289 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46815 * 59.99876 * 23 21 19 25 25 H 1.48500 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47170 * 299.99661 * 23 21 19 27 27 C 1.48568 * 105.87431 * 335.20194 * 14 13 11 28 28 C 1.54569 * 103.28945 * 39.35788 * 27 14 13 29 29 H 1.09003 * 112.83541 * 83.99238 * 28 27 14 30 30 C 1.46646 * 125.28734 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46943 * 60.00549 * 1 2 3 32 32 H 1.09007 * 109.46646 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47462 * 300.00227 * 1 2 3 34 34 H 1.08994 * 109.46891 * 59.99533 * 5 3 2 35 35 H 1.08997 * 109.47274 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47012 * 300.00236 * 5 3 2 37 37 H 1.08999 * 109.47415 * 175.00016 * 6 3 2 38 38 H 1.08994 * 109.46731 * 54.99649 * 6 3 2 39 39 H 1.09001 * 109.70732 * 58.35648 * 10 9 7 40 40 H 1.09003 * 109.70975 * 297.82799 * 10 9 7 41 41 H 1.09007 * 109.88082 * 352.48515 * 13 11 10 42 42 H 1.09000 * 110.01137 * 231.39205 * 13 11 10 43 43 H 1.09000 * 109.47220 * 47.46271 * 15 14 13 44 44 H 1.09003 * 109.47683 * 167.46126 * 15 14 13 45 45 H 0.96997 * 120.00262 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00663 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.68652 * 157.85904 * 27 14 13 48 48 H 1.08999 * 110.68534 * 280.86421 * 27 14 13 49 49 H 1.09005 * 109.91091 * 316.85142 * 30 9 7 50 50 H 1.08995 * 109.91780 * 77.94279 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2634 0.7213 7 6 3.1415 0.9238 2.1734 8 8 2.0184 0.7345 2.5904 9 7 4.1950 0.8303 3.0087 10 6 4.1178 0.5089 4.4358 11 6 5.5485 0.4583 4.9978 12 1 5.7700 1.2955 5.6597 13 6 5.7562 -0.9092 5.6792 14 7 6.7353 -1.6607 4.8655 15 6 6.4288 -3.0973 4.8671 16 6 6.7695 -3.6823 6.2134 17 8 7.2236 -2.9723 7.0857 18 7 6.5707 -4.9945 6.4479 19 6 6.8812 -5.5268 7.6726 20 1 7.2856 -4.8946 8.4494 21 6 6.6768 -6.8798 7.9141 22 7 6.1854 -7.6491 6.9689 23 14 7.1006 -7.6051 9.5827 24 1 6.3003 -6.9279 10.6344 25 1 6.7911 -9.0575 9.5841 26 1 8.5466 -7.4065 9.8560 27 6 6.6411 -1.0976 3.4939 28 6 6.4691 0.4181 3.7431 29 1 7.4182 0.9323 3.8945 30 6 5.5970 1.0346 2.6301 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.2570 1.8013 -1.9564 35 1 2.6614 2.7669 -1.4425 36 1 2.8830 1.0775 -1.9563 37 1 3.8426 2.2371 0.6444 38 1 3.9930 0.5053 0.2619 39 1 3.6359 -0.4598 4.5688 40 1 3.5456 1.2776 4.9553 41 1 4.8115 -1.4517 5.7171 42 1 6.1433 -0.7682 6.6883 43 1 5.3674 -3.2426 4.6659 44 1 7.0162 -3.5951 4.0955 45 1 6.2080 -5.5623 5.7501 46 1 6.0423 -8.5935 7.1376 47 1 7.5550 -1.2945 2.9333 48 1 5.7751 -1.5024 2.9702 49 1 5.8004 0.5415 1.6794 50 1 5.8077 2.1008 2.5477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754839842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:22 Heat of formation + Delta-G solvation = -103.633255 kcal Electronic energy + Delta-G solvation = -30106.734481 eV Core-core repulsion = 25941.163914 eV Total energy + Delta-G solvation = -4165.570566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87512 -39.38844 -38.20707 -37.68054 -35.61427 -33.83974 -33.22773 -31.78918 -31.12259 -30.84370 -28.63478 -27.25981 -26.78027 -26.08496 -24.73406 -23.29758 -21.74792 -21.19146 -20.10415 -19.58441 -18.97651 -17.80242 -17.44357 -17.22834 -16.32695 -16.05040 -15.85336 -15.45918 -15.14391 -15.04028 -14.68988 -14.58159 -14.31181 -13.93751 -13.66273 -13.51322 -13.44573 -13.04547 -12.91389 -12.71962 -12.53234 -12.43192 -12.31643 -12.22108 -11.85279 -11.76770 -11.69709 -11.44902 -11.22731 -11.13384 -10.99663 -10.98002 -10.85113 -10.69980 -10.41973 -10.18431 -9.99047 -9.81417 -9.45694 -8.82219 -8.48028 -7.96269 -7.90616 -6.38300 -3.79162 2.48367 2.76469 3.22274 3.27658 3.31993 3.53326 3.92196 3.95606 4.05501 4.22309 4.31910 4.41486 4.45704 4.61073 4.78594 4.89478 4.96261 5.01515 5.05410 5.07760 5.09759 5.18593 5.24995 5.25876 5.30118 5.30418 5.31101 5.39915 5.50432 5.56026 5.58096 5.63067 5.73074 5.77818 5.80443 5.84266 5.86892 5.97509 6.08110 6.13995 6.30804 6.41046 6.98688 7.12821 7.20551 7.31237 7.57897 8.00832 8.09195 8.65381 9.21385 9.58065 10.10115 10.79515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002220 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.284519 B =12609.160118 C =13577.349078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.136 4.136 7 C 0.530 3.470 8 O -0.532 6.532 9 N -0.616 5.616 10 C 0.111 3.889 11 C -0.108 4.108 12 H 0.102 0.898 13 C 0.051 3.949 14 N -0.489 5.489 15 C 0.037 3.963 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.038 3.962 28 C -0.095 4.095 29 H 0.112 0.888 30 C 0.107 3.893 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.084 0.916 48 H 0.044 0.956 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 20.110 -17.542 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.175 4.175 7 C 0.319 3.681 8 O -0.408 6.408 9 N -0.351 5.351 10 C -0.011 4.011 11 C -0.127 4.127 12 H 0.120 0.880 13 C -0.077 4.077 14 N -0.213 5.213 15 C -0.095 4.095 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.090 4.090 28 C -0.114 4.114 29 H 0.131 0.869 30 C -0.017 4.017 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.568 20.135 -16.552 26.653 hybrid contribution -0.987 -0.848 0.024 1.302 sum -6.555 19.287 -16.528 26.232 Atomic orbital electron populations 1.22703 0.80920 1.02603 0.99639 1.87902 1.19890 1.26805 1.94933 1.21788 0.93484 0.85997 0.94650 0.91454 1.22299 1.02689 1.01624 0.96625 1.21841 0.99192 1.04324 0.92179 1.20212 0.83497 0.76941 0.87491 1.90707 1.22761 1.49653 1.77694 1.48216 1.06649 1.70328 1.09914 1.22034 0.96984 1.01463 0.80641 1.22997 0.93035 0.99678 0.97009 0.88001 1.23032 0.94395 0.91076 0.99215 1.64486 1.47758 1.01965 1.07048 1.22077 0.99579 0.89285 0.98563 1.19698 0.85042 0.83163 0.89047 1.90505 1.49211 1.59840 1.46552 1.41857 1.56825 1.07009 1.14599 1.19639 1.39729 0.92622 0.90780 0.87995 1.25258 0.97252 0.96131 0.99360 1.69601 1.44920 1.06616 1.33289 0.85922 0.79102 0.77534 0.81676 1.19945 1.21010 1.19899 1.23275 1.01031 0.92865 0.91841 1.22976 0.98608 0.96497 0.93360 0.86944 1.21986 0.80606 1.00500 0.98604 0.94656 0.89906 0.93584 0.92117 0.91492 0.91561 0.87739 0.87961 0.91201 0.91510 0.93650 0.88708 0.93275 0.89330 0.77531 0.91850 0.89745 0.93750 0.90500 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.82 101.05 1.09 1.45 16 2 O -0.38 -4.37 9.58 -49.63 -0.48 -4.85 16 3 C 0.10 0.88 2.27 -26.73 -0.06 0.82 16 4 H 0.07 0.63 7.60 -51.93 -0.39 0.23 16 5 C -0.17 -1.07 9.53 37.16 0.35 -0.71 16 6 C -0.14 -1.09 4.45 -27.88 -0.12 -1.21 16 7 C 0.53 6.30 7.71 -10.99 -0.08 6.21 16 8 O -0.53 -8.41 15.72 -8.85 -0.14 -8.55 16 9 N -0.62 -6.60 3.31 -172.30 -0.57 -7.17 16 10 C 0.11 1.32 6.35 -3.63 -0.02 1.30 16 11 C -0.11 -1.21 4.06 -88.15 -0.36 -1.56 16 12 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.05 0.78 5.45 -2.69 -0.01 0.77 16 14 N -0.49 -7.97 4.90 -232.04 -1.14 -9.11 16 15 C 0.04 0.67 5.27 -4.98 -0.03 0.64 16 16 C 0.45 10.66 7.61 -10.99 -0.08 10.57 16 17 O -0.58 -15.68 14.87 5.55 0.08 -15.60 16 18 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.04 0.45 5.79 -2.08 -0.01 0.44 16 28 C -0.09 -0.90 4.16 -87.71 -0.36 -1.27 16 29 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 30 C 0.11 0.82 5.87 -3.31 -0.02 0.80 16 31 H 0.03 0.26 7.87 -51.93 -0.41 -0.15 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.74 7.88 -51.93 -0.41 0.34 16 39 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.74 6.34 -51.93 -0.33 0.41 16 42 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 43 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 44 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 45 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.04 0.55 7.80 -51.93 -0.41 0.14 16 49 H 0.08 0.49 7.47 -51.93 -0.39 0.10 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -34.91 399.96 -8.91 -43.82 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.37 Total: 7.81 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 0.04 Total: 10.18 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.04 Total: -55.15 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.53 Total: -28.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.91 -8.91 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754839842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.814 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds