Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99689 * 2 1 4 4 H 1.09000 * 109.47267 * 329.16792 * 3 2 1 5 5 C 1.50699 * 109.46947 * 89.16648 * 3 2 1 6 6 O 1.21277 * 120.00151 * 5.00053 * 5 3 2 7 7 N 1.34773 * 120.00218 * 184.99564 * 5 3 2 8 8 C 1.46498 * 120.00559 * 180.02562 * 7 5 3 9 9 H 1.08999 * 109.47056 * 34.99843 * 8 7 5 10 10 C 1.53004 * 109.46944 * 275.00128 * 8 7 5 11 11 C 1.52993 * 109.47439 * 155.00312 * 8 7 5 12 12 C 1.53940 * 113.73376 * 276.72756 * 11 8 7 13 13 N 1.47963 * 86.18130 * 221.92340 * 12 11 8 14 14 C 1.46892 * 111.00195 * 137.58296 * 13 12 11 15 15 C 1.50700 * 109.47207 * 90.63871 * 14 13 12 16 16 O 1.21291 * 120.00011 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00184 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00116 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99660 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99880 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47179 * 60.00004 * 22 20 18 24 24 H 1.48505 * 109.47254 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47262 * 300.00038 * 22 20 18 26 26 C 1.47959 * 90.76475 * 24.68542 * 13 12 11 27 27 C 1.53003 * 109.46892 * 209.16344 * 3 2 1 28 28 C 1.53001 * 117.50180 * 353.56420 * 27 3 2 29 29 C 1.53000 * 117.49875 * 62.22475 * 27 3 2 30 30 H 1.08993 * 109.46889 * 184.39809 * 1 2 3 31 31 H 1.08996 * 109.46785 * 304.39923 * 1 2 3 32 32 H 1.08999 * 109.47002 * 64.39467 * 1 2 3 33 33 H 0.97010 * 119.99934 * 0.02562 * 7 5 3 34 34 H 1.09009 * 109.46827 * 60.00099 * 10 8 7 35 35 H 1.09002 * 109.47157 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47689 * 300.00057 * 10 8 7 37 37 H 1.08999 * 112.94261 * 48.43274 * 11 8 7 38 38 H 1.09000 * 113.75317 * 336.23878 * 12 11 8 39 39 H 1.08995 * 113.75623 * 107.60219 * 12 11 8 40 40 H 1.09002 * 109.47467 * 210.63966 * 14 13 12 41 41 H 1.09004 * 109.47456 * 330.63669 * 14 13 12 42 42 H 0.96998 * 119.99416 * 359.97438 * 17 15 14 43 43 H 0.97002 * 120.00222 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.76372 * 220.99212 * 26 13 12 45 45 H 1.09004 * 113.75233 * 89.62784 * 26 13 12 46 46 H 1.08996 * 115.54931 * 207.88760 * 27 3 2 47 47 H 1.08995 * 117.49984 * 215.00057 * 28 27 3 48 48 H 1.09004 * 117.49628 * 0.02562 * 28 27 3 49 49 H 1.09002 * 117.49634 * 359.97438 * 29 27 3 50 50 H 1.09000 * 117.50046 * 144.99421 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3518 1.9964 -0.5267 5 6 2.1956 1.7728 1.4207 6 8 1.9480 1.0245 2.3424 7 7 2.6366 3.0223 1.6670 8 6 2.8174 3.4764 3.0480 9 1 3.1604 2.6439 3.6623 10 6 1.4855 3.9969 3.5922 11 6 3.8565 4.5988 3.0840 12 6 5.3111 4.0958 3.1130 13 7 5.5534 5.1560 4.1163 14 6 6.3915 4.6590 5.2155 15 6 7.8426 4.9055 4.8919 16 8 8.1484 5.4421 3.8480 17 7 8.8006 4.5289 5.7620 18 6 10.1205 4.7536 5.4678 19 1 10.3928 5.2322 4.5386 20 6 11.1081 4.3658 6.3650 21 7 10.7767 3.7841 7.4958 22 14 12.9067 4.6714 5.9639 23 1 13.1340 6.1283 5.7879 24 1 13.7541 4.1684 7.0748 25 1 13.2620 3.9600 4.7097 26 6 4.1233 5.1512 4.4959 27 6 3.3684 1.2591 -0.7030 28 6 3.9048 -0.1136 -1.1138 29 6 3.3866 0.8561 -2.1788 30 1 -0.3633 -1.0246 0.0788 31 1 -0.3633 0.5806 0.8479 32 1 -0.3633 0.4441 -0.9267 33 1 2.8344 3.6210 0.9298 34 1 0.7452 3.1972 3.5666 35 1 1.6199 4.3344 4.6199 36 1 1.1424 4.8294 2.9780 37 1 3.6727 5.3720 2.3380 38 1 5.4184 3.0853 3.5072 39 1 5.8468 4.2473 2.1759 40 1 6.1308 5.1812 6.1361 41 1 6.2247 3.5895 5.3448 42 1 8.5559 4.0995 6.5966 43 1 11.4661 3.5130 8.1220 44 1 3.7101 6.1458 4.6637 45 1 3.8834 4.4493 5.2946 46 1 4.0926 2.0052 -0.3761 47 1 4.9819 -0.2707 -1.0571 48 1 3.2898 -0.9837 -0.8836 49 1 2.4310 0.6236 -2.6488 50 1 4.1228 1.3370 -2.8228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755373558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = -79.873564 kcal Electronic energy + Delta-G solvation = -29688.746159 eV Core-core repulsion = 25524.205891 eV Total energy + Delta-G solvation = -4164.540269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67988 -40.95506 -39.68211 -38.86112 -37.12982 -36.29225 -35.88777 -33.33488 -32.76309 -30.83547 -29.45191 -27.61781 -27.16128 -26.82750 -25.58365 -23.40681 -23.17158 -22.18332 -21.37534 -20.99803 -20.56679 -19.90712 -18.65167 -17.91809 -17.80389 -17.39401 -16.84320 -16.64228 -16.45251 -16.42342 -15.93185 -15.79048 -15.68141 -15.29641 -15.17594 -14.83122 -14.47252 -14.27033 -14.04770 -13.93230 -13.69908 -13.52391 -13.35589 -12.99025 -12.77876 -12.67130 -12.52833 -12.44997 -12.43527 -12.27845 -12.14633 -11.90676 -11.82651 -11.65799 -11.64659 -11.50200 -11.36684 -11.12092 -10.39075 -10.24357 -10.16003 -10.02646 -9.61775 -8.47507 -5.96657 1.38646 1.39870 1.50893 1.51349 2.00002 2.04513 2.27673 2.68184 2.77448 2.94228 3.18275 3.29025 3.44494 3.58295 3.65189 3.78240 3.92372 4.09929 4.16390 4.16671 4.21989 4.23094 4.32203 4.37888 4.42184 4.46063 4.49716 4.51729 4.52308 4.53147 4.75993 4.79530 4.81764 4.83804 4.84156 4.98010 5.00093 5.19057 5.21157 5.30684 5.33448 5.38682 5.42753 5.52603 5.89035 5.99369 6.07710 6.54581 6.59439 7.11620 7.22286 7.55146 8.11427 8.69827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002192 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.458884 B =12773.341141 C =13930.784695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.108 3.892 4 H 0.120 0.880 5 C 0.492 3.508 6 O -0.574 6.574 7 N -0.708 5.708 8 C 0.155 3.845 9 H 0.062 0.938 10 C -0.154 4.154 11 C -0.096 4.096 12 C 0.010 3.990 13 N -0.480 5.480 14 C 0.022 3.978 15 C 0.442 3.558 16 O -0.618 6.618 17 N -0.577 5.577 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.015 3.985 27 C -0.170 4.170 28 C -0.179 4.179 29 C -0.146 4.146 30 H 0.095 0.905 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.416 0.584 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.243 -3.250 -14.975 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.047 3.953 4 H 0.138 0.862 5 C 0.279 3.721 6 O -0.452 6.452 7 N -0.362 5.362 8 C 0.050 3.950 9 H 0.080 0.920 10 C -0.212 4.212 11 C -0.115 4.115 12 C -0.119 4.119 13 N -0.203 5.203 14 C -0.109 4.109 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.215 5.215 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.113 4.113 27 C -0.188 4.188 28 C -0.216 4.216 29 C -0.182 4.182 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.143 0.857 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.665 -3.069 -15.023 28.198 hybrid contribution 0.759 -0.663 0.812 1.294 sum -22.907 -3.732 -14.211 27.214 Atomic orbital electron populations 1.22998 0.79427 1.03932 1.00738 1.87979 1.21442 1.25850 1.94338 1.21536 0.96247 0.86908 0.90623 0.86247 1.21749 0.76191 0.81606 0.92571 1.90695 1.51617 1.55474 1.47463 1.46006 1.66892 1.14086 1.09189 1.20918 0.95693 0.95423 0.82992 0.91999 1.22075 0.95426 1.01259 1.02436 1.23130 0.91679 0.97522 0.99186 1.23995 0.96486 0.93689 0.97773 1.68341 1.06149 1.37256 1.08552 1.22356 0.90966 1.00421 0.97187 1.20805 0.88345 0.82988 0.84949 1.90471 1.83944 1.48250 1.27675 1.41972 1.05667 1.54074 1.19773 1.19620 0.82789 1.38708 1.05227 0.90393 1.26068 1.04394 0.96110 0.94864 1.69668 1.36168 1.40759 1.09677 0.84980 0.76518 0.78781 0.78004 1.19581 1.19413 1.19707 1.24087 0.87826 1.03167 0.96248 1.22339 0.96069 1.01404 0.99013 1.22895 1.00983 0.93701 1.04062 1.23046 1.03755 1.01731 0.89711 0.88674 0.94667 0.91372 0.74733 0.93821 0.90350 0.90394 0.85843 0.92215 0.90819 0.87367 0.90933 0.77124 0.91294 0.87209 0.89934 0.85747 0.88880 0.88835 0.87700 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.79 113.37 1.22 1.56 16 2 O -0.38 -7.49 8.25 -129.99 -1.07 -8.56 16 3 C 0.11 1.72 2.86 29.85 0.09 1.80 16 4 H 0.12 1.10 7.84 -2.39 -0.02 1.09 16 5 C 0.49 10.44 7.03 87.66 0.62 11.06 16 6 O -0.57 -17.79 16.17 15.97 0.26 -17.54 16 7 N -0.71 -11.20 4.96 -442.55 -2.19 -13.39 16 8 C 0.15 2.77 2.41 44.99 0.11 2.88 16 9 H 0.06 1.49 7.37 -2.39 -0.02 1.48 16 10 C -0.15 -2.26 9.29 71.98 0.67 -1.59 16 11 C -0.10 -1.77 3.49 -10.15 -0.04 -1.80 16 12 C 0.01 0.27 7.51 86.41 0.65 0.92 16 13 N -0.48 -15.19 5.65 -912.31 -5.15 -20.34 16 14 C 0.02 0.80 5.28 85.56 0.45 1.25 16 15 C 0.44 21.88 7.83 87.66 0.69 22.57 16 16 O -0.62 -35.49 16.01 -3.07 -0.05 -35.54 16 17 N -0.58 -30.68 5.29 -306.98 -1.62 -32.30 16 18 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 21 N -0.92 -50.87 13.05 21.66 0.28 -50.58 16 22 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.02 0.32 6.57 86.41 0.57 0.88 16 27 C -0.17 -2.53 5.68 -10.79 -0.06 -2.59 16 28 C -0.18 -3.08 9.87 30.62 0.30 -2.78 16 29 C -0.15 -1.70 10.22 30.62 0.31 -1.38 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.54 8.10 -2.39 -0.02 0.52 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.42 4.08 8.60 -92.70 -0.80 3.29 16 34 H 0.04 0.79 8.14 -2.38 -0.02 0.78 16 35 H 0.08 1.02 7.43 -2.39 -0.02 1.00 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.75 7.29 -2.39 -0.02 1.73 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 41 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 42 H 0.40 19.96 7.90 -92.71 -0.73 19.23 16 43 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 1.53 7.85 -2.38 -0.02 1.51 16 46 H 0.12 1.74 8.01 -2.39 -0.02 1.72 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.09 1.88 7.04 -2.39 -0.02 1.86 16 49 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.64 414.04 -1.25 -80.89 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.58 Total: 37.81 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.85 Total: 13.78 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -8.69 Total: -116.61 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.86 Total: -61.64 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.64 -1.25 -80.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.016 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds