Wall clock time and date at job start Tue Mar 31 2020 23:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50695 * 120.00172 * 2 1 4 4 C 1.32992 * 119.99917 * 179.97438 * 2 1 3 5 5 C 1.47110 * 120.00057 * 351.99041 * 4 2 1 6 6 O 1.21612 * 119.99992 * 353.84174 * 5 4 2 7 7 N 1.34778 * 119.99931 * 173.83741 * 5 4 2 8 8 C 1.47154 * 120.98232 * 354.23322 * 7 5 4 9 9 C 1.53293 * 108.41228 * 129.42457 * 8 7 5 10 10 O 1.43043 * 109.18036 * 52.29050 * 9 8 7 11 11 C 1.42967 * 114.18258 * 297.43212 * 10 9 8 12 12 H 1.08993 * 109.51496 * 302.66524 * 11 10 9 13 13 C 1.52998 * 109.51012 * 182.50616 * 11 10 9 14 14 H 1.09006 * 109.47012 * 185.25999 * 13 11 10 15 15 C 1.52997 * 109.47646 * 305.25552 * 13 11 10 16 16 N 1.46895 * 109.47302 * 65.25996 * 13 11 10 17 17 C 1.46901 * 111.00618 * 154.99577 * 16 13 11 18 18 C 1.50696 * 109.47289 * 180.02562 * 17 16 13 19 19 O 1.21284 * 120.00267 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99773 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00028 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99708 * 359.97438 * 21 20 18 23 23 C 1.38940 * 119.99961 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99835 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00019 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47219 * 90.00447 * 25 23 21 27 27 H 1.48502 * 109.47145 * 209.99763 * 25 23 21 28 28 H 1.48490 * 109.47227 * 329.99885 * 25 23 21 29 29 C 1.47151 * 120.97914 * 174.21153 * 7 5 4 30 30 H 1.08999 * 109.46860 * 263.61605 * 1 2 3 31 31 H 1.08998 * 109.46508 * 23.61648 * 1 2 3 32 32 H 1.08998 * 109.46566 * 143.61661 * 1 2 3 33 33 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47221 * 299.99756 * 3 2 1 35 35 H 1.08993 * 109.47138 * 59.99755 * 3 2 1 36 36 H 1.08001 * 120.00004 * 171.98975 * 4 2 1 37 37 H 1.08996 * 109.68285 * 249.16690 * 8 7 5 38 38 H 1.08997 * 109.68379 * 9.68636 * 8 7 5 39 39 H 1.08999 * 109.51391 * 172.24527 * 9 8 7 40 40 H 1.08998 * 109.51605 * 292.39378 * 9 8 7 41 41 H 1.09000 * 109.46791 * 59.99794 * 15 13 11 42 42 H 1.08995 * 109.47601 * 179.97438 * 15 13 11 43 43 H 1.09002 * 109.47209 * 300.00692 * 15 13 11 44 44 H 1.00896 * 110.99971 * 278.95299 * 16 13 11 45 45 H 1.09005 * 109.46992 * 300.00078 * 17 16 13 46 46 H 1.09003 * 109.46720 * 59.99716 * 17 16 13 47 47 H 0.96999 * 120.00037 * 359.97438 * 20 18 17 48 48 H 0.96997 * 119.99669 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.68080 * 350.28217 * 29 7 5 50 50 H 1.09000 * 109.67812 * 110.79712 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4472 -2.4195 0.1786 6 8 0.2589 -2.4094 0.4368 7 7 2.1002 -3.5921 0.0555 8 6 3.5054 -3.6346 -0.3792 9 6 4.2934 -4.4967 0.6137 10 8 3.6365 -5.7583 0.7653 11 6 2.3175 -5.6701 1.3097 12 1 2.3556 -5.1693 2.2770 13 6 1.7413 -7.0767 1.4835 14 1 0.7037 -7.0065 1.8099 15 6 1.8069 -7.8232 0.1496 16 7 2.5234 -7.8052 2.4912 17 6 1.7202 -8.8644 3.1165 18 6 2.5539 -9.5875 4.1426 19 8 3.7042 -9.2538 4.3339 20 7 2.0216 -10.6059 4.8471 21 6 2.7799 -11.2635 5.7810 22 1 3.8038 -10.9658 5.9518 23 6 2.2310 -12.3129 6.5075 24 7 2.9580 -12.9435 7.4023 25 14 0.4596 -12.8273 6.2124 26 1 0.4159 -13.8663 5.1523 27 1 -0.1120 -13.3771 7.4679 28 1 -0.3333 -11.6477 5.7825 29 6 1.4290 -4.8675 0.3523 30 1 -0.3633 -0.1143 1.0213 31 1 -0.3632 0.9416 -0.4117 32 1 -0.3632 -0.8273 -0.6096 33 1 3.3322 1.1058 -0.0005 34 1 1.9973 1.8766 -0.8900 35 1 1.9972 1.8766 0.8899 36 1 3.2441 -1.1564 -0.1298 37 1 3.5684 -4.0718 -1.3756 38 1 3.9156 -2.6249 -0.3948 39 1 5.3040 -4.6544 0.2368 40 1 4.3387 -3.9916 1.5785 41 1 2.8445 -7.8933 -0.1769 42 1 1.3968 -8.8255 0.2735 43 1 1.2265 -7.2827 -0.5982 44 1 3.3689 -8.1819 2.0897 45 1 0.8503 -8.4220 3.6020 46 1 1.3909 -9.5692 2.3530 47 1 1.1018 -10.8730 4.6938 48 1 2.5749 -13.6764 7.9093 49 1 0.4644 -4.6743 0.8216 50 1 1.2824 -5.4286 -0.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755437473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:22 Heat of formation + Delta-G solvation = -83.620985 kcal Electronic energy + Delta-G solvation = -29633.963987 eV Core-core repulsion = 25469.261218 eV Total energy + Delta-G solvation = -4164.702769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73974 -39.10892 -38.36508 -36.36423 -35.86062 -34.86132 -33.93457 -32.26242 -31.60148 -29.60329 -29.09248 -28.18490 -27.11256 -26.59845 -24.76105 -23.65832 -22.99285 -20.80793 -20.18628 -19.35044 -18.51784 -18.29643 -17.77730 -16.66117 -16.36541 -15.84192 -15.76769 -15.40786 -15.18491 -14.98686 -14.78835 -14.50851 -14.43704 -14.26795 -14.11230 -13.58494 -13.47122 -13.23303 -13.08337 -12.82163 -12.69789 -12.64468 -12.56551 -12.38001 -12.07375 -12.03973 -11.83160 -11.70232 -11.58174 -11.40261 -11.13383 -11.05414 -10.81551 -10.57109 -10.25812 -9.94841 -9.79767 -9.54584 -9.54130 -8.74035 -8.53827 -8.15911 -8.06833 -6.28218 -3.79449 0.98873 2.59261 2.95116 3.05232 3.08828 3.17102 3.55248 3.78304 4.01966 4.12917 4.15983 4.36804 4.50813 4.55449 4.70202 4.78273 4.83643 4.86579 4.93517 5.00318 5.03465 5.12339 5.13197 5.24575 5.26612 5.28188 5.36732 5.39594 5.41614 5.47943 5.49857 5.61342 5.68554 5.71442 5.74892 5.87046 5.92353 5.99405 6.04095 6.12335 6.16888 6.22838 6.99168 7.07639 7.18235 7.61394 7.67704 7.89875 8.17910 8.63286 8.98284 9.45762 9.86668 10.85011 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.001935 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.422359 B =14469.313717 C =14775.814309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.028 4.028 3 C -0.128 4.128 4 C -0.241 4.241 5 C 0.549 3.451 6 O -0.540 6.540 7 N -0.613 5.613 8 C 0.072 3.928 9 C 0.048 3.952 10 O -0.364 6.364 11 C 0.092 3.908 12 H 0.072 0.928 13 C 0.094 3.906 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.659 5.659 17 C 0.047 3.953 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.082 3.918 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.358 0.642 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 24.681 -20.555 32.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.184 4.184 4 C -0.262 4.262 5 C 0.341 3.659 6 O -0.419 6.419 7 N -0.346 5.346 8 C -0.052 4.052 9 C -0.030 4.030 10 O -0.282 6.282 11 C 0.033 3.967 12 H 0.090 0.910 13 C -0.017 4.017 14 H 0.109 0.891 15 C -0.241 4.241 16 N -0.291 5.291 17 C -0.086 4.086 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.232 5.232 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.041 4.041 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.179 0.821 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.083 0.917 49 H 0.118 0.882 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.843 24.998 -19.657 32.032 hybrid contribution -1.360 -1.023 -0.749 1.859 sum -5.203 23.974 -20.406 31.910 Atomic orbital electron populations 1.21119 0.90837 1.02280 1.03828 1.22612 0.96968 0.94500 0.88927 1.21028 0.99872 0.94444 1.03075 1.22441 1.00273 0.91871 1.11606 1.18569 0.86590 0.83892 0.76801 1.90763 1.15029 1.87147 1.49002 1.47996 1.12794 1.06135 1.67722 1.22554 0.81345 1.02145 0.99115 1.22950 0.96321 0.85424 0.98331 1.88013 1.28276 1.27871 1.84065 1.22517 0.82597 0.96004 0.95578 0.90958 1.21497 0.97354 0.91705 0.91127 0.89146 1.22504 1.03198 1.00464 0.97936 1.60075 1.07607 1.28729 1.32727 1.21758 0.96789 0.93347 0.96722 1.19715 0.88570 0.82848 0.85207 1.90568 1.18156 1.66759 1.68964 1.42211 1.13269 1.31122 1.36562 1.19432 0.98708 1.12012 1.13113 0.86300 1.25036 0.98266 0.96601 0.96313 1.69625 1.36505 1.22474 1.23649 0.86667 0.84629 0.79253 0.78819 1.19690 1.20205 1.19470 1.22397 0.97567 0.83752 1.00338 0.90113 0.92602 0.89481 0.91335 0.90601 0.90188 0.85387 0.90474 0.88704 0.87632 0.92488 0.91206 0.92540 0.92240 0.82105 0.89545 0.93665 0.79717 0.91662 0.88205 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.45 36.01 0.30 -0.71 16 2 C -0.03 -0.21 6.10 -101.17 -0.62 -0.82 16 3 C -0.13 -0.56 10.09 36.00 0.36 -0.19 16 4 C -0.24 -1.93 8.94 -37.80 -0.34 -2.27 16 5 C 0.55 5.99 7.49 -12.66 -0.09 5.89 16 6 O -0.54 -7.38 12.81 5.27 0.07 -7.31 16 7 N -0.61 -5.99 3.02 -173.67 -0.52 -6.51 16 8 C 0.07 0.51 6.56 -3.53 -0.02 0.48 16 9 C 0.05 0.40 6.99 37.31 0.26 0.66 16 10 O -0.36 -4.25 9.45 -35.23 -0.33 -4.58 16 11 C 0.09 1.07 2.70 -26.58 -0.07 0.99 16 12 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 13 C 0.09 1.13 2.46 -67.72 -0.17 0.96 16 14 H 0.09 0.99 7.80 -51.93 -0.40 0.59 16 15 C -0.18 -1.91 8.73 37.16 0.32 -1.59 16 16 N -0.66 -10.48 5.82 -107.99 -0.63 -11.11 16 17 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 18 C 0.45 10.41 7.82 -10.98 -0.09 10.32 16 19 O -0.56 -15.41 15.78 5.55 0.09 -15.32 16 20 N -0.59 -14.30 5.09 -10.97 -0.06 -14.36 16 21 C -0.30 -8.72 10.16 -14.94 -0.15 -8.87 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 25 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.08 0.85 5.80 -3.53 -0.02 0.83 16 30 H 0.08 0.74 7.98 -51.93 -0.41 0.32 16 31 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.09 0.88 6.27 -51.93 -0.33 0.55 16 33 H 0.07 0.24 7.82 -51.93 -0.41 -0.17 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.13 0.71 5.78 -52.49 -0.30 0.41 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.46 5.40 -51.93 -0.28 0.17 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 42 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 43 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 44 H 0.36 6.14 8.17 -39.29 -0.32 5.82 16 45 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 46 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 47 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.10 1.12 7.13 -51.93 -0.37 0.75 16 50 H 0.08 0.74 6.28 -51.93 -0.33 0.41 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.27 396.11 -7.62 -42.89 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.82 Total: 13.25 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.44 Total: 7.48 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.43 Total: -57.25 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.18 Total: -27.22 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.27 -7.62 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755437473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.729 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds