Wall clock time and date at job start Tue Mar 31 2020 23:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50695 * 120.00172 * 2 1 4 4 C 1.32992 * 119.99917 * 179.97438 * 2 1 3 5 5 C 1.47110 * 120.00057 * 351.99041 * 4 2 1 6 6 O 1.21612 * 119.99992 * 353.84174 * 5 4 2 7 7 N 1.34778 * 119.99931 * 173.83741 * 5 4 2 8 8 C 1.47154 * 120.98232 * 354.23322 * 7 5 4 9 9 C 1.53293 * 108.41228 * 129.42457 * 8 7 5 10 10 O 1.43043 * 109.18036 * 52.29050 * 9 8 7 11 11 C 1.42967 * 114.18258 * 297.43212 * 10 9 8 12 12 H 1.08993 * 109.51496 * 302.66524 * 11 10 9 13 13 C 1.52998 * 109.51012 * 182.50616 * 11 10 9 14 14 H 1.09006 * 109.47012 * 185.25999 * 13 11 10 15 15 C 1.52997 * 109.47646 * 305.25552 * 13 11 10 16 16 N 1.46895 * 109.47302 * 65.25996 * 13 11 10 17 17 C 1.46901 * 111.00618 * 154.99577 * 16 13 11 18 18 C 1.50696 * 109.47289 * 180.02562 * 17 16 13 19 19 O 1.21284 * 120.00267 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99773 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00028 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99708 * 359.97438 * 21 20 18 23 23 C 1.38940 * 119.99961 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99835 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00019 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47219 * 90.00447 * 25 23 21 27 27 H 1.48502 * 109.47145 * 209.99763 * 25 23 21 28 28 H 1.48490 * 109.47227 * 329.99885 * 25 23 21 29 29 C 1.47151 * 120.97914 * 174.21153 * 7 5 4 30 30 H 1.08999 * 109.46860 * 263.61605 * 1 2 3 31 31 H 1.08998 * 109.46508 * 23.61648 * 1 2 3 32 32 H 1.08998 * 109.46566 * 143.61661 * 1 2 3 33 33 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47221 * 299.99756 * 3 2 1 35 35 H 1.08993 * 109.47138 * 59.99755 * 3 2 1 36 36 H 1.08001 * 120.00004 * 171.98975 * 4 2 1 37 37 H 1.08996 * 109.68285 * 249.16690 * 8 7 5 38 38 H 1.08997 * 109.68379 * 9.68636 * 8 7 5 39 39 H 1.08999 * 109.51391 * 172.24527 * 9 8 7 40 40 H 1.08998 * 109.51605 * 292.39378 * 9 8 7 41 41 H 1.09000 * 109.46791 * 59.99794 * 15 13 11 42 42 H 1.08995 * 109.47601 * 179.97438 * 15 13 11 43 43 H 1.09002 * 109.47209 * 300.00692 * 15 13 11 44 44 H 1.00896 * 110.99971 * 278.95299 * 16 13 11 45 45 H 1.09005 * 109.46992 * 300.00078 * 17 16 13 46 46 H 1.09003 * 109.46720 * 59.99716 * 17 16 13 47 47 H 0.96999 * 120.00037 * 359.97438 * 20 18 17 48 48 H 0.96997 * 119.99669 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.68080 * 350.28217 * 29 7 5 50 50 H 1.09000 * 109.67812 * 110.79712 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4472 -2.4195 0.1786 6 8 0.2589 -2.4094 0.4368 7 7 2.1002 -3.5921 0.0555 8 6 3.5054 -3.6346 -0.3792 9 6 4.2934 -4.4967 0.6137 10 8 3.6365 -5.7583 0.7653 11 6 2.3175 -5.6701 1.3097 12 1 2.3556 -5.1693 2.2770 13 6 1.7413 -7.0767 1.4835 14 1 0.7037 -7.0065 1.8099 15 6 1.8069 -7.8232 0.1496 16 7 2.5234 -7.8052 2.4912 17 6 1.7202 -8.8644 3.1165 18 6 2.5539 -9.5875 4.1426 19 8 3.7042 -9.2538 4.3339 20 7 2.0216 -10.6059 4.8471 21 6 2.7799 -11.2635 5.7810 22 1 3.8038 -10.9658 5.9518 23 6 2.2310 -12.3129 6.5075 24 7 2.9580 -12.9435 7.4023 25 14 0.4596 -12.8273 6.2124 26 1 0.4159 -13.8663 5.1523 27 1 -0.1120 -13.3771 7.4679 28 1 -0.3333 -11.6477 5.7825 29 6 1.4290 -4.8675 0.3523 30 1 -0.3633 -0.1143 1.0213 31 1 -0.3632 0.9416 -0.4117 32 1 -0.3632 -0.8273 -0.6096 33 1 3.3322 1.1058 -0.0005 34 1 1.9973 1.8766 -0.8900 35 1 1.9972 1.8766 0.8899 36 1 3.2441 -1.1564 -0.1298 37 1 3.5684 -4.0718 -1.3756 38 1 3.9156 -2.6249 -0.3948 39 1 5.3040 -4.6544 0.2368 40 1 4.3387 -3.9916 1.5785 41 1 2.8445 -7.8933 -0.1769 42 1 1.3968 -8.8255 0.2735 43 1 1.2265 -7.2827 -0.5982 44 1 3.3689 -8.1819 2.0897 45 1 0.8503 -8.4220 3.6020 46 1 1.3909 -9.5692 2.3530 47 1 1.1018 -10.8730 4.6938 48 1 2.5749 -13.6764 7.9093 49 1 0.4644 -4.6743 0.8216 50 1 1.2824 -5.4286 -0.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755437473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:21 Heat of formation + Delta-G solvation = -111.381398 kcal Electronic energy + Delta-G solvation = -29635.167769 eV Core-core repulsion = 25469.261218 eV Total energy + Delta-G solvation = -4165.906551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52650 -40.38340 -39.75786 -37.47198 -36.46819 -35.98260 -35.66592 -33.77913 -33.23131 -30.53512 -29.76342 -28.67442 -28.14239 -27.82943 -26.04008 -24.90557 -23.86859 -21.65452 -21.32313 -20.94329 -20.27661 -19.13996 -18.50934 -17.86648 -17.46559 -17.04991 -16.68778 -16.60787 -16.45019 -16.06884 -16.00377 -15.52511 -15.30772 -15.08663 -14.93512 -14.86114 -14.69128 -14.50127 -14.19395 -14.04191 -13.64752 -13.62186 -13.35083 -13.25872 -13.18203 -13.15260 -12.86267 -12.56046 -12.46315 -12.42002 -12.34363 -12.22715 -11.98686 -11.92387 -11.63069 -11.51429 -11.11629 -10.58674 -10.43565 -10.24964 -10.15094 -9.48599 -9.29285 -8.41332 -6.02271 0.36662 1.30563 1.35516 1.44681 1.87408 1.95693 2.21929 2.23091 2.69918 2.77875 3.15052 3.33225 3.55809 3.80971 3.85386 3.87058 3.95472 4.04872 4.12383 4.18664 4.23341 4.26579 4.38843 4.42127 4.45534 4.53563 4.57153 4.57662 4.68461 4.73595 4.77630 4.80103 4.89889 4.90940 4.97946 5.01376 5.03481 5.17592 5.33246 5.37580 5.52901 5.53177 5.62458 5.90695 6.04425 6.24273 6.35310 6.39991 6.60021 6.88011 7.12512 7.39642 7.96558 8.76369 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.001935 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.422359 B =14469.313717 C =14775.814309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.024 4.024 3 C -0.125 4.125 4 C -0.254 4.254 5 C 0.538 3.462 6 O -0.578 6.578 7 N -0.616 5.616 8 C 0.075 3.925 9 C 0.041 3.959 10 O -0.382 6.382 11 C 0.100 3.900 12 H 0.046 0.954 13 C 0.095 3.905 14 H 0.105 0.895 15 C -0.173 4.173 16 N -0.678 5.678 17 C 0.061 3.939 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.232 1.232 29 C 0.089 3.911 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.348 0.652 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 25.996 -23.039 35.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 C -0.181 4.181 4 C -0.274 4.274 5 C 0.332 3.668 6 O -0.461 6.461 7 N -0.349 5.349 8 C -0.047 4.047 9 C -0.036 4.036 10 O -0.301 6.301 11 C 0.041 3.959 12 H 0.064 0.936 13 C -0.015 4.015 14 H 0.123 0.877 15 C -0.232 4.232 16 N -0.310 5.310 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.180 1.180 27 H -0.200 1.200 28 H -0.155 1.155 29 C -0.034 4.034 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.173 0.827 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.131 0.869 46 H 0.098 0.902 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.950 26.336 -22.172 34.937 hybrid contribution -0.554 -1.342 0.039 1.453 sum -6.505 24.994 -22.133 34.013 Atomic orbital electron populations 1.21059 0.91983 1.02447 1.02558 1.22911 0.96506 0.95816 0.87393 1.21086 1.00231 0.92793 1.04003 1.22566 1.01416 0.90600 1.12819 1.19153 0.86416 0.85014 0.76219 1.90744 1.16721 1.87737 1.50889 1.48132 1.13815 1.05664 1.67241 1.22702 0.79605 1.03476 0.98920 1.23173 0.97412 0.84529 0.98488 1.87986 1.28334 1.29786 1.83997 1.22339 0.83158 0.95715 0.94729 0.93578 1.21606 0.97430 0.91434 0.91065 0.87697 1.22400 1.02898 1.00614 0.97250 1.60054 1.07862 1.28601 1.34520 1.21683 0.95894 0.93847 0.95672 1.20994 0.88459 0.81857 0.85063 1.90545 1.20936 1.67957 1.70417 1.42028 1.13807 1.31377 1.36047 1.19009 0.97148 1.13935 1.15761 0.92759 1.26128 1.04619 0.95617 0.95054 1.69808 1.39612 1.23209 1.24867 0.85353 0.76713 0.80217 0.79166 1.18023 1.20028 1.15505 1.22256 0.96717 0.84164 1.00293 0.91655 0.90464 0.91766 0.90003 0.89163 0.89518 0.82722 0.89252 0.86069 0.85521 0.93515 0.92278 0.92126 0.90375 0.83272 0.86902 0.90247 0.77451 0.91146 0.89433 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 8.45 71.24 0.60 -1.37 16 2 C -0.02 -0.31 6.10 -17.62 -0.11 -0.42 16 3 C -0.12 -0.73 10.09 71.23 0.72 -0.01 16 4 C -0.25 -3.64 8.94 23.43 0.21 -3.43 16 5 C 0.54 11.47 7.49 86.57 0.65 12.12 16 6 O -0.58 -16.18 12.81 -4.07 -0.05 -16.23 16 7 N -0.62 -11.40 3.02 -821.61 -2.48 -13.89 16 8 C 0.07 0.90 6.56 86.35 0.57 1.47 16 9 C 0.04 0.65 6.99 72.08 0.50 1.15 16 10 O -0.38 -8.69 9.45 -148.98 -1.41 -10.10 16 11 C 0.10 2.26 2.70 30.69 0.08 2.35 16 12 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 13 C 0.09 2.12 2.46 44.91 0.11 2.23 16 14 H 0.11 2.04 7.80 -2.38 -0.02 2.02 16 15 C -0.17 -3.23 8.73 71.98 0.63 -2.60 16 16 N -0.68 -21.04 5.82 -495.58 -2.89 -23.93 16 17 C 0.06 1.92 5.97 85.56 0.51 2.43 16 18 C 0.45 20.78 7.82 87.65 0.69 21.47 16 19 O -0.61 -35.10 15.78 -3.04 -0.05 -35.14 16 20 N -0.59 -28.41 5.09 -307.00 -1.56 -29.97 16 21 C -0.33 -19.65 10.16 84.04 0.85 -18.79 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 24 N -0.93 -57.01 13.96 21.66 0.30 -56.70 16 25 Si 0.97 39.27 27.74 68.60 1.90 41.18 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 29 C 0.09 1.76 5.80 86.36 0.50 2.26 16 30 H 0.06 1.23 7.98 -2.39 -0.02 1.21 16 31 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.06 1.33 6.27 -2.39 -0.01 1.32 16 33 H 0.08 0.29 7.82 -2.39 -0.02 0.27 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.16 1.25 5.78 -2.91 -0.02 1.24 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.12 0.80 5.40 -2.39 -0.01 0.78 16 39 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 1.25 7.54 -2.39 -0.02 1.23 16 42 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 43 H 0.08 1.17 6.42 -2.39 -0.02 1.15 16 44 H 0.35 11.96 8.17 -89.70 -0.73 11.23 16 45 H 0.11 3.01 8.06 -2.38 -0.02 2.99 16 46 H 0.08 2.01 7.44 -2.39 -0.02 1.99 16 47 H 0.39 15.46 5.76 -92.71 -0.53 14.93 16 48 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.09 1.95 7.13 -2.39 -0.02 1.94 16 50 H 0.09 1.54 6.28 -2.39 -0.01 1.52 16 Total: -1.00 -84.19 396.11 0.39 -83.79 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.35 Total: 42.55 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.98 Total: 18.44 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -6.63 Total: -124.49 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -1.51 Total: -61.47 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.18 kcal Total: -84.19 0.39 -83.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755437473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.587 kcal (2) G-P(sol) polarization free energy of solvation -84.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds