Wall clock time and date at job start Tue Mar 31 2020 23:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 120.00091 * 2 1 4 4 C 1.32990 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00229 * 20.47330 * 4 2 1 6 6 O 1.21616 * 120.00013 * 9.14225 * 5 4 2 7 7 N 1.34776 * 120.00270 * 189.13864 * 5 4 2 8 8 C 1.47154 * 120.98114 * 174.17973 * 7 5 4 9 9 C 1.53295 * 108.38641 * 129.19101 * 8 7 5 10 10 O 1.42967 * 109.22283 * 52.30061 * 9 8 7 11 11 C 1.42961 * 114.16374 * 297.42137 * 10 9 8 12 12 H 1.09000 * 109.51631 * 302.65576 * 11 10 9 13 13 C 1.53006 * 109.51224 * 182.55522 * 11 10 9 14 14 H 1.09001 * 109.47101 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46970 * 59.99729 * 13 11 10 16 16 N 1.46903 * 109.46836 * 300.00087 * 13 11 10 17 17 C 1.46902 * 110.99775 * 204.99799 * 16 13 11 18 18 C 1.50697 * 109.47110 * 179.97438 * 17 16 13 19 19 O 1.21295 * 120.00086 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00250 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00119 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00339 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99795 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00261 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46846 * 59.99931 * 25 23 21 27 27 H 1.48502 * 109.47167 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46844 * 299.99859 * 25 23 21 29 29 C 1.47152 * 120.98380 * 353.89470 * 7 5 4 30 30 H 1.08993 * 109.47210 * 182.23375 * 1 2 3 31 31 H 1.09004 * 109.46984 * 302.23465 * 1 2 3 32 32 H 1.09007 * 109.46793 * 62.22874 * 1 2 3 33 33 H 1.09004 * 109.47286 * 269.99840 * 3 2 1 34 34 H 1.08997 * 109.47389 * 29.99942 * 3 2 1 35 35 H 1.09001 * 109.47419 * 149.99939 * 3 2 1 36 36 H 1.08003 * 119.99969 * 200.47912 * 4 2 1 37 37 H 1.09000 * 109.68107 * 248.91233 * 8 7 5 38 38 H 1.08999 * 109.68269 * 9.42783 * 8 7 5 39 39 H 1.08996 * 109.51603 * 172.22563 * 9 8 7 40 40 H 1.08999 * 109.51067 * 292.32790 * 9 8 7 41 41 H 1.09001 * 109.47239 * 300.00579 * 15 13 11 42 42 H 1.09002 * 109.46929 * 60.00527 * 15 13 11 43 43 H 1.08998 * 109.46927 * 179.97438 * 15 13 11 44 44 H 1.00895 * 111.00090 * 81.04252 * 16 13 11 45 45 H 1.08999 * 109.47027 * 299.99957 * 17 16 13 46 46 H 1.09000 * 109.46783 * 60.00014 * 17 16 13 47 47 H 0.96998 * 119.99909 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99845 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.67986 * 350.53427 * 29 7 5 50 50 H 1.08996 * 109.68005 * 111.08488 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.5061 -2.3852 -0.4466 6 8 0.4095 -2.3294 -0.9694 7 7 2.1114 -3.5773 -0.2761 8 6 1.4148 -4.8333 -0.5967 9 6 2.3242 -5.6733 -1.5008 10 8 3.6101 -5.7988 -0.8888 11 6 4.2987 -4.5582 -0.7140 12 1 4.4096 -4.0642 -1.6793 13 6 5.6808 -4.8211 -0.1126 14 1 6.2050 -3.8748 0.0208 15 6 6.4837 -5.7212 -1.0539 16 7 5.5301 -5.4847 1.1893 17 6 6.6966 -5.2336 2.0462 18 6 6.5060 -5.9278 3.3701 19 8 5.4975 -6.5684 3.5794 20 7 7.4562 -5.8370 4.3216 21 6 7.2830 -6.4691 5.5258 22 1 6.3850 -7.0394 5.7122 23 6 8.2624 -6.3750 6.5070 24 7 9.3545 -5.6798 6.2808 25 14 8.0269 -7.2368 8.1475 26 1 7.8831 -8.6976 7.9231 27 1 9.2057 -6.9822 9.0141 28 1 6.8044 -6.7149 8.8097 29 6 3.4905 -3.6611 0.2303 30 1 -0.3633 -1.0268 0.0401 31 1 -0.3633 0.5482 0.8693 32 1 -0.3633 0.4789 -0.9094 33 1 2.4422 1.6197 -1.0277 34 1 1.6715 2.0647 0.5138 35 1 3.2129 1.1748 0.5138 36 1 3.2007 -1.1815 0.3267 37 1 1.2036 -5.3807 0.3219 38 1 0.4819 -4.6135 -1.1158 39 1 1.8880 -6.6628 -1.6376 40 1 2.4272 -5.1838 -2.4692 41 1 5.9593 -6.6675 -1.1870 42 1 6.5955 -5.2289 -2.0199 43 1 7.4685 -5.9082 -0.6257 44 1 5.3721 -6.4745 1.0745 45 1 7.5937 -5.6171 1.5602 46 1 6.8025 -4.1613 2.2106 47 1 8.2625 -5.3245 4.1544 48 1 10.0383 -5.6144 6.9656 49 1 3.9324 -2.6651 0.2583 50 1 3.4882 -4.0905 1.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755437475.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:28 Heat of formation + Delta-G solvation = -86.340765 kcal Electronic energy + Delta-G solvation = -30110.305856 eV Core-core repulsion = 25945.485148 eV Total energy + Delta-G solvation = -4164.820708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57381 -39.01321 -38.18772 -36.27473 -35.59515 -34.78351 -33.89881 -31.86133 -31.17461 -29.99150 -28.67523 -28.03215 -27.23086 -26.28542 -24.45534 -23.79978 -22.94494 -20.61547 -20.21264 -19.27450 -18.19813 -17.90419 -17.59897 -16.67595 -16.32570 -15.76490 -15.56895 -15.26742 -15.08319 -14.80858 -14.49037 -14.38497 -14.34077 -14.13458 -13.93493 -13.70242 -13.47671 -13.19833 -12.96353 -12.80663 -12.60905 -12.43978 -12.26910 -12.14351 -11.90215 -11.78685 -11.60848 -11.55603 -11.41759 -11.39702 -11.02618 -10.98484 -10.66953 -10.43988 -10.21656 -10.18591 -9.66179 -9.49201 -9.15271 -8.60070 -8.41572 -8.00697 -7.94155 -6.41295 -3.81927 1.07785 2.82217 3.10941 3.20516 3.26032 3.30594 3.62103 3.92214 4.08399 4.31257 4.35403 4.57293 4.60930 4.73416 4.85347 4.95667 5.00059 5.06326 5.12079 5.17464 5.20568 5.22787 5.26782 5.28794 5.36909 5.41148 5.44813 5.51708 5.54187 5.56886 5.68649 5.71751 5.78112 5.86560 5.87578 5.99241 6.09256 6.18389 6.26263 6.28291 6.35666 6.39243 7.03182 7.26234 7.29766 7.55582 7.71169 8.07005 8.07309 8.62195 9.18736 9.55244 10.07014 10.76444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002482 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.807365 B =11276.953252 C =12401.856610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C -0.128 4.128 4 C -0.243 4.243 5 C 0.553 3.447 6 O -0.548 6.548 7 N -0.611 5.611 8 C 0.077 3.923 9 C 0.051 3.949 10 O -0.363 6.363 11 C 0.094 3.906 12 H 0.059 0.941 13 C 0.092 3.908 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.657 5.657 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.080 3.920 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.358 0.642 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.089 0.911 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 10.299 -17.496 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 C -0.185 4.185 4 C -0.264 4.264 5 C 0.345 3.655 6 O -0.429 6.429 7 N -0.344 5.344 8 C -0.046 4.046 9 C -0.027 4.027 10 O -0.282 6.282 11 C 0.035 3.965 12 H 0.077 0.923 13 C -0.020 4.020 14 H 0.109 0.891 15 C -0.238 4.238 16 N -0.289 5.289 17 C -0.084 4.084 18 C 0.227 3.773 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.042 4.042 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.179 0.821 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.607 10.234 -17.142 22.608 hybrid contribution 1.272 -0.381 0.328 1.368 sum -9.335 9.853 -16.814 21.609 Atomic orbital electron populations 1.21439 0.91243 1.06221 1.01513 1.22535 0.96723 0.94411 0.89046 1.21025 1.00172 0.94352 1.02908 1.22444 1.01870 0.92346 1.09716 1.18560 0.84794 0.83503 0.78598 1.90656 1.20924 1.86479 1.44831 1.48087 1.15486 1.05687 1.65114 1.22287 0.96848 0.84659 1.00776 1.22909 0.84245 1.00853 0.94654 1.88021 1.29732 1.29014 1.81384 1.22504 0.91922 0.85439 0.96678 0.92344 1.21571 0.92346 0.98683 0.89382 0.89141 1.22431 1.00463 1.01229 0.99726 1.60166 1.38758 1.19185 1.10836 1.21728 0.91981 1.01027 0.93683 1.19813 0.85411 0.86230 0.85894 1.90537 1.29436 1.45564 1.80966 1.41858 1.18644 1.46375 1.13283 1.19648 1.05213 1.28004 0.89961 0.88008 1.25250 0.95181 0.97541 0.99955 1.69604 1.08316 1.40878 1.35653 0.85930 0.77635 0.79659 0.81074 1.19924 1.21002 1.19894 1.22566 0.80275 1.01049 1.00329 0.88052 0.91533 0.91237 0.90032 0.91235 0.91004 0.85085 0.90252 0.88449 0.87781 0.93194 0.91367 0.92504 0.92361 0.82125 0.93825 0.89726 0.77511 0.91857 0.89301 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.36 36.01 0.34 -1.12 16 2 C -0.03 -0.24 6.03 -101.17 -0.61 -0.85 16 3 C -0.13 -0.84 10.05 36.00 0.36 -0.48 16 4 C -0.24 -2.57 8.90 -37.81 -0.34 -2.90 16 5 C 0.55 7.12 7.36 -12.67 -0.09 7.03 16 6 O -0.55 -8.23 13.03 5.26 0.07 -8.16 16 7 N -0.61 -7.38 3.02 -173.67 -0.52 -7.90 16 8 C 0.08 0.86 6.66 -3.53 -0.02 0.84 16 9 C 0.05 0.51 6.99 37.31 0.26 0.77 16 10 O -0.36 -4.42 9.58 -35.23 -0.34 -4.76 16 11 C 0.09 1.02 2.59 -26.58 -0.07 0.96 16 12 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 13 C 0.09 1.02 2.43 -67.71 -0.16 0.86 16 14 H 0.09 0.88 7.80 -51.93 -0.40 0.47 16 15 C -0.18 -1.86 9.02 37.16 0.34 -1.53 16 16 N -0.66 -9.85 4.86 -107.99 -0.52 -10.38 16 17 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 18 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 19 O -0.58 -15.53 15.78 5.54 0.09 -15.45 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C 0.08 0.92 5.73 -3.54 -0.02 0.90 16 30 H 0.10 1.26 5.00 -51.93 -0.26 1.00 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.13 1.16 5.97 -52.48 -0.31 0.85 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.09 7.06 -51.93 -0.37 0.72 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 44 H 0.36 6.00 8.17 -39.29 -0.32 5.68 16 45 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 46 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 47 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.09 0.84 5.51 -51.93 -0.29 0.56 16 50 H 0.10 1.48 7.40 -51.93 -0.38 1.10 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -32.62 401.76 -7.89 -40.51 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -7.98 Total: 14.50 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.38 Total: 7.36 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.38 Total: -56.05 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.18 Total: -28.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.62 -7.89 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755437475.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.826 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds