Wall clock time and date at job start Tue Mar 31 2020 23:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47286 * 2 1 4 4 C 1.52997 * 109.46854 * 119.99340 * 2 1 3 5 5 N 1.46506 * 109.47086 * 179.58911 * 4 2 1 6 6 C 1.46495 * 120.00093 * 263.98335 * 5 4 2 7 7 C 1.34776 * 119.99592 * 83.98877 * 5 4 2 8 8 O 1.21280 * 120.00419 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.08999 * 110.67071 * 59.29602 * 9 7 5 11 11 C 1.54998 * 110.74775 * 296.07761 * 9 7 5 12 12 C 1.56259 * 102.58979 * 241.71645 * 11 9 7 13 13 H 1.08992 * 115.39068 * 158.04515 * 12 11 9 14 14 C 1.55816 * 105.25378 * 287.18605 * 12 11 9 15 15 C 1.56782 * 102.93609 * 72.53536 * 14 12 11 16 16 C 1.55818 * 110.74801 * 182.51191 * 9 7 5 17 17 H 1.09004 * 115.38691 * 320.21036 * 16 9 7 18 18 O 1.46529 * 101.24620 * 85.90581 * 16 9 7 19 19 N 1.46893 * 109.47349 * 239.99653 * 2 1 3 20 20 C 1.46902 * 110.99846 * 83.12383 * 19 2 1 21 21 C 1.50700 * 109.47111 * 180.02562 * 20 19 2 22 22 O 1.21298 * 119.99960 * 359.97438 * 21 20 19 23 23 N 1.34780 * 120.00185 * 179.97438 * 21 20 19 24 24 C 1.37094 * 119.99804 * 179.97438 * 23 21 20 25 25 H 1.07998 * 120.00416 * 0.02562 * 24 23 21 26 26 C 1.38955 * 119.99814 * 179.97438 * 24 23 21 27 27 N 1.31416 * 119.99719 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00091 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47463 * 90.00216 * 28 26 24 30 30 H 1.48508 * 109.47183 * 210.00128 * 28 26 24 31 31 H 1.48501 * 109.47475 * 329.99956 * 28 26 24 32 32 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46733 * 60.00128 * 1 2 3 34 34 H 1.08996 * 109.47642 * 300.00527 * 1 2 3 35 35 H 1.08998 * 109.47781 * 299.59314 * 4 2 1 36 36 H 1.09008 * 109.47242 * 59.59448 * 4 2 1 37 37 H 1.09006 * 109.47294 * 95.31739 * 6 5 4 38 38 H 1.09000 * 109.46910 * 215.31755 * 6 5 4 39 39 H 1.08998 * 109.47250 * 335.31842 * 6 5 4 40 40 H 1.09002 * 110.75053 * 0.02562 * 11 9 7 41 41 H 1.09003 * 110.75002 * 123.35125 * 11 9 7 42 42 H 1.08997 * 110.74784 * 191.07720 * 14 12 11 43 43 H 1.09001 * 110.74782 * 314.24235 * 14 12 11 44 44 H 1.08991 * 111.52212 * 242.08474 * 15 14 12 45 45 H 1.08995 * 110.74502 * 118.17706 * 15 14 12 46 46 H 1.00899 * 110.99885 * 207.07044 * 19 2 1 47 47 H 1.09001 * 109.47185 * 299.99504 * 20 19 2 48 48 H 1.08994 * 109.47626 * 59.99729 * 20 19 2 49 49 H 0.96995 * 119.99739 * 359.97438 * 23 21 20 50 50 H 0.97001 * 119.99387 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5049 -0.7297 1.2444 6 6 4.2289 -1.8944 0.7292 7 6 4.1866 0.3339 1.7140 8 8 3.5873 1.2983 2.1402 9 6 5.6935 0.3253 1.7085 10 1 6.0739 0.2016 0.6945 11 6 6.2397 -0.7871 2.6394 12 6 7.0447 0.0249 3.7045 13 1 7.2079 -0.4837 4.6546 14 6 8.3257 0.5142 2.9647 15 6 7.7761 1.6329 2.0137 16 6 6.2553 1.6277 2.3537 17 1 5.7176 2.5424 2.1042 18 8 6.2638 1.2629 3.7728 19 7 2.0197 -0.6925 -1.1993 20 6 2.0404 0.2111 -2.3574 21 6 2.5465 -0.5331 -3.5662 22 8 2.8597 -1.7011 -3.4721 23 7 2.6512 0.0993 -4.7518 24 6 3.1122 -0.5776 -5.8513 25 1 3.3910 -1.6176 -5.7675 26 6 3.2196 0.0742 -7.0738 27 7 2.8798 1.3396 -7.1758 28 14 3.8470 -0.8482 -8.5720 29 1 2.7027 -1.4701 -9.2856 30 1 4.5417 0.0986 -9.4811 31 1 4.7955 -1.9063 -8.1407 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 0.5139 0.8899 35 1 1.6826 -0.2031 2.1393 36 1 1.6706 -1.7467 1.2531 37 1 4.4906 -1.7267 -0.3156 38 1 5.1378 -2.0442 1.3119 39 1 3.5970 -2.7790 0.8079 40 1 5.4219 -1.3355 3.1070 41 1 6.8947 -1.4633 2.0900 42 1 9.0466 0.9252 3.6715 43 1 8.7717 -0.2959 2.3877 44 1 7.9382 1.3819 0.9655 45 1 8.2222 2.5978 2.2544 46 1 2.9310 -1.0944 -1.0380 47 1 1.0317 0.5757 -2.5518 48 1 2.6977 1.0549 -2.1482 49 1 2.4004 1.0332 -4.8271 50 1 2.9552 1.7946 -8.0291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755608231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:23 Heat of formation + Delta-G solvation = -94.810690 kcal Electronic energy + Delta-G solvation = -30762.104141 eV Core-core repulsion = 26596.916150 eV Total energy + Delta-G solvation = -4165.187991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45158 -39.54368 -38.29225 -36.80423 -34.95220 -33.90337 -32.66850 -31.56710 -31.19380 -30.59644 -29.99379 -27.40654 -26.69535 -25.94253 -24.02924 -23.04005 -22.01532 -20.84678 -20.43650 -19.31775 -19.14366 -17.90534 -17.43821 -17.01761 -16.52054 -16.31858 -15.67017 -15.47704 -15.40044 -14.80076 -14.57517 -14.44693 -14.28805 -13.84319 -13.57069 -13.48161 -13.07901 -12.91198 -12.78686 -12.73096 -12.48476 -12.16188 -11.94090 -11.86558 -11.84178 -11.78663 -11.65424 -11.61202 -11.42756 -11.37839 -11.27441 -11.10028 -10.83820 -10.82086 -10.41190 -10.23275 -10.20254 -9.75589 -9.52280 -8.78948 -8.44341 -8.05129 -7.96732 -6.42839 -3.83850 2.49706 2.79922 3.16369 3.25012 3.30347 3.52389 3.89771 4.06452 4.09680 4.14279 4.31140 4.35632 4.45819 4.53313 4.73080 4.80518 4.89845 4.90207 4.96445 5.07298 5.11931 5.14745 5.23141 5.25960 5.34089 5.38623 5.40008 5.50523 5.59114 5.62024 5.63534 5.67462 5.69531 5.72859 5.79591 5.80657 5.88450 6.02466 6.08072 6.23011 6.27009 6.29055 6.47243 7.17168 7.28920 7.53629 7.71479 8.04622 8.05048 8.60007 9.16307 9.53267 10.04467 10.74903 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002737 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.508660 B =10228.475894 C =11557.581442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.046 0.954 4 C 0.117 3.883 5 N -0.617 5.617 6 C 0.063 3.937 7 C 0.525 3.475 8 O -0.531 6.531 9 C -0.142 4.142 10 H 0.110 0.890 11 C -0.138 4.138 12 C 0.058 3.942 13 H 0.131 0.869 14 C -0.148 4.148 15 C -0.150 4.150 16 C 0.089 3.911 17 H 0.136 0.864 18 O -0.364 6.364 19 N -0.663 5.663 20 C 0.050 3.950 21 C 0.442 3.558 22 O -0.585 6.585 23 N -0.563 5.563 24 C -0.300 4.300 25 H 0.103 0.897 26 C 0.022 3.978 27 N -0.901 5.901 28 Si 0.930 3.070 29 H -0.278 1.278 30 H -0.284 1.284 31 H -0.270 1.270 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.346 0.654 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 -1.840 20.791 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 H 0.064 0.936 4 C -0.006 4.006 5 N -0.351 5.351 6 C -0.079 4.079 7 C 0.313 3.687 8 O -0.407 6.407 9 C -0.163 4.163 10 H 0.128 0.872 11 C -0.176 4.176 12 C 0.001 3.999 13 H 0.148 0.852 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.031 3.969 17 H 0.154 0.846 18 O -0.283 6.283 19 N -0.298 5.298 20 C -0.083 4.083 21 C 0.227 3.773 22 O -0.470 6.470 23 N -0.200 5.200 24 C -0.429 4.429 25 H 0.121 0.879 26 C -0.180 4.180 27 N -0.542 5.542 28 Si 0.757 3.243 29 H -0.204 1.204 30 H -0.209 1.209 31 H -0.194 1.194 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.332 -2.147 20.954 21.995 hybrid contribution 0.926 0.578 -1.107 1.555 sum 7.259 -1.569 19.847 21.191 Atomic orbital electron populations 1.21722 0.93950 1.02448 1.01419 1.21926 0.96299 0.96563 0.89807 0.93570 1.21749 0.78524 1.02094 0.98215 1.47887 1.06930 1.17565 1.62698 1.22166 0.97871 0.88144 0.99764 1.20350 0.89413 0.82202 0.76752 1.90696 1.70499 1.33472 1.46029 1.23100 0.92830 0.98345 1.02053 0.87168 1.23409 1.00455 0.97017 0.96744 1.24792 0.90525 0.86366 0.98251 0.85158 1.23544 0.97649 0.98727 0.98655 1.23581 0.95265 0.99803 1.00139 1.24482 0.94906 0.96762 0.80786 0.84622 1.90146 1.73691 1.39593 1.24839 1.60278 1.33569 1.33737 1.02259 1.21714 1.01385 0.93956 0.91242 1.19809 0.84955 0.88126 0.84379 1.90500 1.54738 1.16706 1.85013 1.41872 1.57393 1.13248 1.07469 1.19695 1.39730 0.97152 0.86347 0.87933 1.25272 0.97650 0.95813 0.99224 1.69620 1.48277 1.09623 1.26727 0.85859 0.78925 0.78908 0.80588 1.20378 1.20936 1.19433 0.91816 0.92298 0.92658 0.89649 0.89397 0.91657 0.90555 0.90071 0.90150 0.89290 0.90722 0.90409 0.90042 0.90346 0.83206 0.89606 0.94246 0.77465 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.39 37.16 0.35 -1.34 16 2 C 0.07 0.90 2.87 -67.72 -0.19 0.71 16 3 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 4 C 0.12 1.38 5.03 -4.04 -0.02 1.36 16 5 N -0.62 -7.10 2.55 -181.57 -0.46 -7.57 16 6 C 0.06 0.59 8.93 59.84 0.53 1.13 16 7 C 0.53 6.80 6.86 -10.99 -0.08 6.72 16 8 O -0.53 -8.73 15.57 5.56 0.09 -8.64 16 9 C -0.14 -1.41 2.09 -89.21 -0.19 -1.60 16 10 H 0.11 0.99 7.76 -51.93 -0.40 0.59 16 11 C -0.14 -1.05 4.18 -23.93 -0.10 -1.15 16 12 C 0.06 0.47 5.72 -23.48 -0.13 0.33 16 13 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.15 -1.00 6.57 -23.18 -0.15 -1.15 16 15 C -0.15 -1.19 6.66 -23.18 -0.15 -1.35 16 16 C 0.09 0.94 4.57 -23.72 -0.11 0.83 16 17 H 0.14 1.58 7.75 -51.93 -0.40 1.17 16 18 O -0.36 -4.38 11.65 -35.23 -0.41 -4.79 16 19 N -0.66 -11.01 5.93 -108.00 -0.64 -11.65 16 20 C 0.05 0.92 5.97 -4.97 -0.03 0.90 16 21 C 0.44 10.50 7.82 -10.98 -0.09 10.42 16 22 O -0.59 -15.66 15.78 5.54 0.09 -15.57 16 23 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 24 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 25 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 26 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 27 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 28 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 31 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 36 H 0.09 0.92 7.78 -51.92 -0.40 0.51 16 37 H 0.06 0.72 6.85 -51.93 -0.36 0.36 16 38 H 0.08 0.54 4.47 -51.93 -0.23 0.31 16 39 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 40 H 0.08 0.64 7.17 -51.93 -0.37 0.27 16 41 H 0.09 0.48 7.46 -51.93 -0.39 0.10 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.42 7.81 -51.93 -0.41 0.02 16 44 H 0.08 0.58 7.79 -51.93 -0.40 0.18 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.35 5.76 4.93 -39.29 -0.19 5.57 16 47 H 0.09 1.50 7.31 -51.93 -0.38 1.12 16 48 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -34.06 392.31 -8.28 -42.34 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -7.89 Total: 14.54 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.60 Total: 7.82 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.44 Total: -57.52 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.24 Total: -29.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.06 -8.28 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755608231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.475 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds