Wall clock time and date at job start Tue Mar 31 2020 23:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47286 * 2 1 4 4 C 1.52997 * 109.46854 * 119.99340 * 2 1 3 5 5 N 1.46506 * 109.47086 * 179.58911 * 4 2 1 6 6 C 1.46495 * 120.00093 * 263.98335 * 5 4 2 7 7 C 1.34776 * 119.99592 * 83.98877 * 5 4 2 8 8 O 1.21280 * 120.00419 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.08999 * 110.67071 * 59.29602 * 9 7 5 11 11 C 1.54998 * 110.74775 * 296.07761 * 9 7 5 12 12 C 1.56259 * 102.58979 * 241.71645 * 11 9 7 13 13 H 1.08992 * 115.39068 * 158.04515 * 12 11 9 14 14 C 1.55816 * 105.25378 * 287.18605 * 12 11 9 15 15 C 1.56782 * 102.93609 * 72.53536 * 14 12 11 16 16 C 1.55818 * 110.74801 * 182.51191 * 9 7 5 17 17 H 1.09004 * 115.38691 * 320.21036 * 16 9 7 18 18 O 1.46529 * 101.24620 * 85.90581 * 16 9 7 19 19 N 1.46893 * 109.47349 * 239.99653 * 2 1 3 20 20 C 1.46902 * 110.99846 * 83.12383 * 19 2 1 21 21 C 1.50700 * 109.47111 * 180.02562 * 20 19 2 22 22 O 1.21298 * 119.99960 * 359.97438 * 21 20 19 23 23 N 1.34780 * 120.00185 * 179.97438 * 21 20 19 24 24 C 1.37094 * 119.99804 * 179.97438 * 23 21 20 25 25 H 1.07998 * 120.00416 * 0.02562 * 24 23 21 26 26 C 1.38955 * 119.99814 * 179.97438 * 24 23 21 27 27 N 1.31416 * 119.99719 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00091 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47463 * 90.00216 * 28 26 24 30 30 H 1.48508 * 109.47183 * 210.00128 * 28 26 24 31 31 H 1.48501 * 109.47475 * 329.99956 * 28 26 24 32 32 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46733 * 60.00128 * 1 2 3 34 34 H 1.08996 * 109.47642 * 300.00527 * 1 2 3 35 35 H 1.08998 * 109.47781 * 299.59314 * 4 2 1 36 36 H 1.09008 * 109.47242 * 59.59448 * 4 2 1 37 37 H 1.09006 * 109.47294 * 95.31739 * 6 5 4 38 38 H 1.09000 * 109.46910 * 215.31755 * 6 5 4 39 39 H 1.08998 * 109.47250 * 335.31842 * 6 5 4 40 40 H 1.09002 * 110.75053 * 0.02562 * 11 9 7 41 41 H 1.09003 * 110.75002 * 123.35125 * 11 9 7 42 42 H 1.08997 * 110.74784 * 191.07720 * 14 12 11 43 43 H 1.09001 * 110.74782 * 314.24235 * 14 12 11 44 44 H 1.08991 * 111.52212 * 242.08474 * 15 14 12 45 45 H 1.08995 * 110.74502 * 118.17706 * 15 14 12 46 46 H 1.00899 * 110.99885 * 207.07044 * 19 2 1 47 47 H 1.09001 * 109.47185 * 299.99504 * 20 19 2 48 48 H 1.08994 * 109.47626 * 59.99729 * 20 19 2 49 49 H 0.96995 * 119.99739 * 359.97438 * 23 21 20 50 50 H 0.97001 * 119.99387 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5049 -0.7297 1.2444 6 6 4.2289 -1.8944 0.7292 7 6 4.1866 0.3339 1.7140 8 8 3.5873 1.2983 2.1402 9 6 5.6935 0.3253 1.7085 10 1 6.0739 0.2016 0.6945 11 6 6.2397 -0.7871 2.6394 12 6 7.0447 0.0249 3.7045 13 1 7.2079 -0.4837 4.6546 14 6 8.3257 0.5142 2.9647 15 6 7.7761 1.6329 2.0137 16 6 6.2553 1.6277 2.3537 17 1 5.7176 2.5424 2.1042 18 8 6.2638 1.2629 3.7728 19 7 2.0197 -0.6925 -1.1993 20 6 2.0404 0.2111 -2.3574 21 6 2.5465 -0.5331 -3.5662 22 8 2.8597 -1.7011 -3.4721 23 7 2.6512 0.0993 -4.7518 24 6 3.1122 -0.5776 -5.8513 25 1 3.3910 -1.6176 -5.7675 26 6 3.2196 0.0742 -7.0738 27 7 2.8798 1.3396 -7.1758 28 14 3.8470 -0.8482 -8.5720 29 1 2.7027 -1.4701 -9.2856 30 1 4.5417 0.0986 -9.4811 31 1 4.7955 -1.9063 -8.1407 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 0.5139 0.8899 35 1 1.6826 -0.2031 2.1393 36 1 1.6706 -1.7467 1.2531 37 1 4.4906 -1.7267 -0.3156 38 1 5.1378 -2.0442 1.3119 39 1 3.5970 -2.7790 0.8079 40 1 5.4219 -1.3355 3.1070 41 1 6.8947 -1.4633 2.0900 42 1 9.0466 0.9252 3.6715 43 1 8.7717 -0.2959 2.3877 44 1 7.9382 1.3819 0.9655 45 1 8.2222 2.5978 2.2544 46 1 2.9310 -1.0944 -1.0380 47 1 1.0317 0.5757 -2.5518 48 1 2.6977 1.0549 -2.1482 49 1 2.4004 1.0332 -4.8271 50 1 2.9552 1.7946 -8.0291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755608231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:22 Heat of formation + Delta-G solvation = -119.948764 kcal Electronic energy + Delta-G solvation = -30763.194209 eV Core-core repulsion = 26596.916150 eV Total energy + Delta-G solvation = -4166.278060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23594 -40.56642 -40.03922 -38.05963 -36.16915 -35.79813 -33.53163 -33.27670 -32.46183 -31.53862 -30.65831 -28.30973 -28.17947 -27.10770 -25.75842 -23.80479 -22.75000 -21.74194 -21.28862 -21.12111 -20.12302 -19.92689 -18.34999 -17.99093 -17.61753 -17.47776 -17.07965 -16.64429 -16.40400 -16.19234 -15.98675 -15.72959 -15.45543 -15.12592 -15.02867 -14.44486 -14.22003 -14.01308 -13.85363 -13.62824 -13.52663 -13.43532 -13.33944 -12.98361 -12.88509 -12.79813 -12.71846 -12.60519 -12.50101 -12.48751 -12.41607 -12.11389 -12.08029 -11.98721 -11.89409 -11.51860 -11.51502 -10.94882 -10.69182 -10.37101 -10.03744 -9.76343 -9.42569 -8.47549 -5.96876 1.37899 1.42002 1.52073 1.54944 1.91156 2.01142 2.28050 2.84495 2.85444 3.19262 3.30730 3.45840 3.46959 3.66012 3.78137 3.85342 3.88489 4.07340 4.12096 4.20022 4.20267 4.26946 4.34475 4.36560 4.39324 4.44984 4.50077 4.53664 4.59117 4.60207 4.74094 4.81089 4.87571 4.91400 4.94192 4.97520 5.00641 5.07491 5.11727 5.19572 5.29078 5.39943 5.49436 5.61712 5.84168 6.04514 6.27662 6.39649 6.57135 7.07481 7.10169 7.52878 8.06797 8.69973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002737 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.508660 B =10228.475894 C =11557.581442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 H 0.027 0.973 4 C 0.118 3.882 5 N -0.615 5.615 6 C 0.062 3.938 7 C 0.517 3.483 8 O -0.575 6.575 9 C -0.140 4.140 10 H 0.121 0.879 11 C -0.132 4.132 12 C 0.053 3.947 13 H 0.149 0.851 14 C -0.141 4.141 15 C -0.146 4.146 16 C 0.078 3.922 17 H 0.111 0.889 18 O -0.400 6.400 19 N -0.667 5.667 20 C 0.063 3.937 21 C 0.441 3.559 22 O -0.616 6.616 23 N -0.573 5.573 24 C -0.333 4.333 25 H 0.083 0.917 26 C -0.014 4.014 27 N -0.922 5.922 28 Si 0.995 3.005 29 H -0.272 1.272 30 H -0.272 1.272 31 H -0.269 1.269 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.345 0.655 47 H 0.099 0.901 48 H 0.049 0.951 49 H 0.394 0.606 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 -3.217 20.939 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.045 0.955 4 C -0.004 4.004 5 N -0.347 5.347 6 C -0.080 4.080 7 C 0.306 3.694 8 O -0.455 6.455 9 C -0.161 4.161 10 H 0.139 0.861 11 C -0.170 4.170 12 C -0.003 4.003 13 H 0.167 0.833 14 C -0.179 4.179 15 C -0.184 4.184 16 C 0.019 3.981 17 H 0.129 0.871 18 O -0.319 6.319 19 N -0.302 5.302 20 C -0.070 4.070 21 C 0.229 3.771 22 O -0.502 6.502 23 N -0.209 5.209 24 C -0.462 4.462 25 H 0.101 0.899 26 C -0.214 4.214 27 N -0.563 5.563 28 Si 0.818 3.182 29 H -0.197 1.197 30 H -0.197 1.197 31 H -0.194 1.194 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.167 0.833 47 H 0.117 0.883 48 H 0.067 0.933 49 H 0.228 0.772 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.411 -3.532 21.108 22.648 hybrid contribution 0.547 1.026 -1.093 1.596 sum 7.958 -2.505 20.015 21.685 Atomic orbital electron populations 1.21705 0.92624 1.02926 1.01914 1.21968 0.97273 0.95444 0.89465 0.95527 1.21735 0.78990 1.02804 0.96914 1.47983 1.06913 1.17890 1.61933 1.22306 0.99102 0.87525 0.99093 1.20960 0.90755 0.81731 0.75935 1.90669 1.71577 1.35106 1.48099 1.23137 0.90643 0.99163 1.03153 0.86094 1.23456 1.00756 0.96440 0.96300 1.25101 0.90614 0.85173 0.99462 0.83336 1.23547 0.97087 0.98755 0.98469 1.23574 0.93159 1.00579 1.01085 1.24472 0.96614 0.96268 0.80707 0.87089 1.90111 1.74742 1.41531 1.25538 1.60330 1.33654 1.33625 1.02623 1.21555 1.01915 0.93723 0.89782 1.20636 0.83474 0.87920 0.85095 1.90469 1.55790 1.18286 1.85681 1.41945 1.57886 1.13330 1.07782 1.19699 1.41783 0.96820 0.87912 0.89926 1.26093 0.97181 0.96624 1.01480 1.69690 1.48294 1.10593 1.27725 0.84898 0.78470 0.77830 0.76973 1.19721 1.19664 1.19354 0.91286 0.93139 0.90876 0.89864 0.87523 0.93288 0.87902 0.88891 0.90408 0.86241 0.90210 0.88229 0.89049 0.90460 0.83304 0.88264 0.93301 0.77208 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.39 71.98 0.68 -2.46 16 2 C 0.07 1.87 2.87 44.92 0.13 2.00 16 3 H 0.03 0.84 7.83 -2.38 -0.02 0.82 16 4 C 0.12 2.70 5.03 86.38 0.43 3.13 16 5 N -0.62 -13.65 2.55 -846.75 -2.16 -15.81 16 6 C 0.06 1.05 8.93 127.77 1.14 2.19 16 7 C 0.52 13.40 6.86 87.66 0.60 14.00 16 8 O -0.58 -19.62 15.57 -3.03 -0.05 -19.67 16 9 C -0.14 -2.67 2.09 -9.88 -0.02 -2.69 16 10 H 0.12 2.02 7.76 -2.39 -0.02 2.00 16 11 C -0.13 -1.69 4.18 32.41 0.14 -1.55 16 12 C 0.05 0.75 5.72 32.70 0.19 0.94 16 13 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.14 -1.56 6.57 32.89 0.22 -1.34 16 15 C -0.15 -2.16 6.66 32.90 0.22 -1.95 16 16 C 0.08 1.67 4.57 32.55 0.15 1.82 16 17 H 0.11 2.83 7.75 -2.38 -0.02 2.81 16 18 O -0.40 -9.62 11.65 -148.98 -1.74 -11.36 16 19 N -0.67 -21.75 5.93 -495.59 -2.94 -24.69 16 20 C 0.06 2.32 5.97 85.56 0.51 2.83 16 21 C 0.44 21.17 7.82 87.66 0.69 21.86 16 22 O -0.62 -33.31 15.78 -3.09 -0.05 -33.36 16 23 N -0.57 -29.65 5.29 -306.97 -1.62 -31.28 16 24 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 25 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 26 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 27 N -0.92 -50.01 13.05 21.67 0.28 -49.73 16 28 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 31 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.26 7.34 -2.38 -0.02 1.24 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.97 7.61 -2.39 -0.02 1.95 16 36 H 0.11 2.03 7.78 -2.38 -0.02 2.01 16 37 H 0.05 1.03 6.85 -2.38 -0.02 1.01 16 38 H 0.10 1.17 4.47 -2.39 -0.01 1.16 16 39 H 0.09 1.38 7.78 -2.39 -0.02 1.36 16 40 H 0.08 1.06 7.17 -2.39 -0.02 1.04 16 41 H 0.12 0.81 7.46 -2.39 -0.02 0.79 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.69 7.81 -2.39 -0.02 0.67 16 44 H 0.09 1.15 7.79 -2.39 -0.02 1.13 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.35 11.32 4.93 -89.70 -0.44 10.88 16 47 H 0.10 3.42 7.31 -2.39 -0.02 3.40 16 48 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 49 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16 50 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -74.83 392.31 -0.11 -74.94 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -0.21 Total: 45.96 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.34 Total: 20.52 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.44 Total: -121.50 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -1.83 Total: -64.39 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -74.83 -0.11 -74.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755608231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.010 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds