Wall clock time and date at job start Wed Apr 1 2020 00:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47541 * 2 1 4 4 C 1.46501 * 120.00108 * 270.00456 * 3 2 1 5 5 C 1.50706 * 109.46901 * 269.99720 * 4 3 2 6 6 H 1.07998 * 119.99686 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99623 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00304 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47313 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47585 * 119.99532 * 9 7 5 12 12 H 1.48506 * 109.47025 * 239.99672 * 9 7 5 13 13 C 1.34774 * 119.99991 * 89.99731 * 3 2 1 14 14 O 1.21284 * 120.00464 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99755 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.46933 * 179.97438 * 15 13 3 17 17 C 1.33794 * 124.18035 * 269.95897 * 16 15 13 18 18 O 1.21538 * 123.76511 * 0.02869 * 17 16 15 19 19 N 1.34866 * 112.50453 * 180.12733 * 17 16 15 20 20 C 1.47309 * 106.43634 * 359.85875 * 19 17 16 21 21 C 1.53001 * 110.59785 * 118.73385 * 20 19 17 22 22 C 1.53000 * 110.60276 * 241.52622 * 20 19 17 23 23 C 1.53006 * 109.46926 * 302.33029 * 22 20 19 24 24 C 1.53000 * 109.46761 * 82.74098 * 23 22 20 25 25 C 1.52996 * 109.47271 * 202.74191 * 23 22 20 26 26 C 1.34770 * 124.17793 * 90.00020 * 16 15 13 27 27 O 1.21230 * 127.15559 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47163 * 300.00254 * 1 2 3 30 30 H 1.09006 * 109.47107 * 59.99245 * 1 2 3 31 31 H 1.09002 * 109.46584 * 240.00208 * 2 1 3 32 32 H 1.08997 * 109.47170 * 120.00493 * 2 1 3 33 33 H 1.08995 * 109.47335 * 29.99533 * 4 3 2 34 34 H 1.08998 * 109.46938 * 149.99609 * 4 3 2 35 35 H 0.97005 * 119.99570 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46984 * 59.99867 * 15 13 3 37 37 H 1.08996 * 109.46890 * 299.99063 * 15 13 3 38 38 H 0.96997 * 126.87060 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.47339 * 177.47054 * 21 20 19 40 40 H 1.09009 * 109.46847 * 297.46891 * 21 20 19 41 41 H 1.08994 * 109.47319 * 57.46294 * 21 20 19 42 42 H 1.09001 * 109.47070 * 182.33562 * 22 20 19 43 43 H 1.08996 * 109.46954 * 62.32867 * 22 20 19 44 44 H 1.09002 * 109.47192 * 322.75203 * 23 22 20 45 45 H 1.09006 * 109.47027 * 51.50578 * 24 23 22 46 46 H 1.09005 * 109.47005 * 171.49739 * 24 23 22 47 47 H 1.08995 * 109.47736 * 291.50132 * 24 23 22 48 48 H 1.09007 * 109.46971 * 56.25122 * 25 23 22 49 49 H 1.09000 * 109.46634 * 176.24444 * 25 23 22 50 50 H 1.08992 * 109.47464 * 296.25039 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1266 -3.6175 9 14 5.9134 2.0962 -3.4171 10 1 6.6007 1.2402 -2.4172 11 1 5.9204 1.4181 -4.7382 12 1 6.6216 3.3971 -3.5247 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9923 1.3058 2.4723 16 7 2.3101 2.2032 3.5858 17 6 3.5165 2.2940 4.1572 18 8 4.4794 1.6387 3.8101 19 7 3.5450 3.1922 5.1629 20 6 2.1882 3.7583 5.2548 21 6 1.5738 3.4641 6.6248 22 6 2.2144 5.2651 4.9908 23 6 3.1537 5.9418 5.9913 24 6 4.5962 5.8277 5.4941 25 6 2.7763 7.4183 6.1269 26 6 1.4232 3.0387 4.1617 27 8 0.2563 3.1843 3.8670 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5140 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0284 34 1 2.0956 3.1410 -1.1383 35 1 3.6755 3.5171 -4.4435 36 1 2.6227 0.4186 2.5298 37 1 0.9444 1.0115 2.5302 38 1 4.3078 3.4225 5.7161 39 1 0.5899 3.9287 6.6892 40 1 1.4760 2.3863 6.7553 41 1 2.2180 3.8676 7.4061 42 1 1.2093 5.6714 5.1041 43 1 2.5692 5.4502 3.9770 44 1 3.0642 5.4532 6.9615 45 1 4.6544 6.1797 4.4641 46 1 5.2465 6.4356 6.1231 47 1 4.9153 4.7865 5.5408 48 1 1.7288 7.5004 6.4169 49 1 3.4016 7.8846 6.8883 50 1 2.9296 7.9217 5.1725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053134194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:03 Heat of formation + Delta-G solvation = -79.467274 kcal Electronic energy + Delta-G solvation = -31651.100071 eV Core-core repulsion = 27486.577421 eV Total energy + Delta-G solvation = -4164.522651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62064 -39.13051 -38.56348 -37.66568 -35.71224 -35.32459 -34.29538 -32.77751 -31.23195 -30.13588 -29.14638 -27.41459 -27.30112 -26.61651 -24.33525 -23.12273 -22.89642 -21.95567 -20.54177 -20.25012 -18.61396 -17.99729 -17.18572 -16.47023 -16.38775 -16.18876 -15.83119 -15.71723 -15.11861 -14.95989 -14.53016 -14.32691 -14.18247 -14.03873 -13.83614 -13.77890 -13.43137 -13.15136 -12.94837 -12.82897 -12.64259 -12.48693 -12.05077 -11.97063 -11.89087 -11.80526 -11.58424 -11.42338 -11.21610 -11.18166 -10.92993 -10.88495 -10.73845 -10.67877 -10.52992 -10.16624 -10.10872 -10.02454 -9.59967 -9.47268 -8.84781 -8.41751 -7.70685 -6.02550 -4.06829 1.65249 2.12929 3.00465 3.09380 3.29156 3.32089 3.39823 3.45892 3.78342 3.94924 4.22645 4.39272 4.47405 4.65929 4.68995 4.86629 4.94123 4.96331 5.12353 5.18060 5.22606 5.32212 5.34328 5.38192 5.41999 5.45736 5.48891 5.56371 5.61222 5.63546 5.68224 5.72242 5.75496 5.78350 5.91965 6.01479 6.02622 6.14011 6.22567 6.48584 6.75424 7.02722 7.07150 7.38188 7.43680 7.52397 7.93988 8.15758 8.24688 8.34947 8.87901 9.03142 9.58210 11.05609 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.003564 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.061752 B = 7854.897350 C = 8925.808681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.531 6.531 15 C 0.096 3.904 16 N -0.557 5.557 17 C 0.708 3.292 18 O -0.536 6.536 19 N -0.721 5.721 20 C 0.125 3.875 21 C -0.146 4.146 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.154 4.154 25 C -0.147 4.147 26 C 0.536 3.464 27 O -0.465 6.465 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.437 0.563 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 0.039 22.850 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.279 3.721 14 O -0.408 6.408 15 C -0.029 4.029 16 N -0.302 5.302 17 C 0.408 3.592 18 O -0.409 6.409 19 N -0.391 5.391 20 C 0.034 3.966 21 C -0.204 4.204 22 C -0.152 4.152 23 C -0.114 4.114 24 C -0.211 4.211 25 C -0.204 4.204 26 C 0.323 3.677 27 O -0.334 6.334 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.286 0.714 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.306 0.402 22.215 22.843 hybrid contribution 1.326 -0.112 -0.394 1.388 sum -3.980 0.289 21.820 22.182 Atomic orbital electron populations 1.22239 0.96523 1.01600 1.02534 1.21494 0.93675 0.84001 1.03001 1.48216 1.63401 1.13311 1.07438 1.19299 0.96412 0.93601 0.77802 1.21485 0.96865 1.31802 1.06238 0.92308 1.24926 0.97867 0.94904 0.96385 1.69949 1.35583 1.33558 1.14341 0.86448 0.84668 0.78091 0.78290 1.19708 1.20946 1.20911 1.20316 0.79254 0.87338 0.85160 1.90682 1.45406 1.17849 1.86858 1.21678 1.04176 0.92797 0.84229 1.45847 1.11952 1.39747 1.32618 1.15894 0.82622 0.80748 0.79895 1.91022 1.35432 1.48072 1.66364 1.46132 1.12676 1.42839 1.37413 1.21449 0.82825 0.96020 0.96292 1.22023 1.02033 1.03047 0.93271 1.21981 1.01846 0.89838 1.01526 1.21166 0.95067 0.96559 0.98570 1.22125 0.95452 1.01458 1.02101 1.21850 1.01331 0.95150 1.02100 1.20714 0.86148 0.78565 0.82314 1.90774 1.14115 1.63184 1.65288 0.91930 0.93022 0.91840 0.89480 0.91749 0.94772 0.93932 0.92810 0.86166 0.86483 0.71373 0.89769 0.91482 0.90178 0.89250 0.89897 0.90610 0.91896 0.92437 0.92592 0.92442 0.92539 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.76 2.46 -175.06 -0.43 -13.19 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.46 29.54 -169.99 -5.02 17.43 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 13 C 0.49 10.77 7.74 -10.98 -0.09 10.68 16 14 O -0.53 -13.90 16.01 5.55 0.09 -13.81 16 15 C 0.10 1.56 4.73 -5.19 -0.02 1.54 16 16 N -0.56 -8.91 2.09 -121.92 -0.26 -9.17 16 17 C 0.71 11.33 8.63 -87.71 -0.76 10.57 16 18 O -0.54 -10.49 17.48 5.33 0.09 -10.39 16 19 N -0.72 -8.17 4.86 -52.84 -0.26 -8.43 16 20 C 0.12 1.31 1.00 -132.09 -0.13 1.18 16 21 C -0.15 -1.02 8.66 37.16 0.32 -0.70 16 22 C -0.11 -1.13 4.23 -26.73 -0.11 -1.25 16 23 C -0.10 -0.71 2.72 -90.62 -0.25 -0.96 16 24 C -0.15 -1.30 8.81 37.16 0.33 -0.97 16 25 C -0.15 -1.02 9.10 37.16 0.34 -0.68 16 26 C 0.54 7.84 6.98 -10.55 -0.07 7.77 16 27 O -0.46 -7.68 17.76 5.60 0.10 -7.58 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.12 1.76 7.12 -51.93 -0.37 1.39 16 37 H 0.12 1.58 7.05 -51.93 -0.37 1.21 16 38 H 0.44 3.91 6.19 -40.82 -0.25 3.66 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.08 0.39 6.54 -51.93 -0.34 0.05 16 42 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 43 H 0.08 1.08 7.80 -51.93 -0.40 0.67 16 44 H 0.08 0.43 6.08 -51.93 -0.32 0.12 16 45 H 0.06 0.66 7.93 -51.93 -0.41 0.24 16 46 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 47 H 0.06 0.47 4.70 -51.93 -0.24 0.22 16 48 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -37.48 403.24 -7.37 -44.85 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.97 Total: 0.89 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: -0.53 Total: 19.59 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.21 Total: -57.06 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: 0.28 Total: -31.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.48 -7.37 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053134194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.619 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds