Wall clock time and date at job start Wed Apr 1 2020 00:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47541 * 2 1 4 4 C 1.46501 * 120.00108 * 270.00456 * 3 2 1 5 5 C 1.50706 * 109.46901 * 269.99720 * 4 3 2 6 6 H 1.07998 * 119.99686 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99623 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00304 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47313 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47585 * 119.99532 * 9 7 5 12 12 H 1.48506 * 109.47025 * 239.99672 * 9 7 5 13 13 C 1.34774 * 119.99991 * 89.99731 * 3 2 1 14 14 O 1.21284 * 120.00464 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99755 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.46933 * 179.97438 * 15 13 3 17 17 C 1.33794 * 124.18035 * 269.95897 * 16 15 13 18 18 O 1.21538 * 123.76511 * 0.02869 * 17 16 15 19 19 N 1.34866 * 112.50453 * 180.12733 * 17 16 15 20 20 C 1.47309 * 106.43634 * 359.85875 * 19 17 16 21 21 C 1.53001 * 110.59785 * 118.73385 * 20 19 17 22 22 C 1.53000 * 110.60276 * 241.52622 * 20 19 17 23 23 C 1.53006 * 109.46926 * 302.33029 * 22 20 19 24 24 C 1.53000 * 109.46761 * 82.74098 * 23 22 20 25 25 C 1.52996 * 109.47271 * 202.74191 * 23 22 20 26 26 C 1.34770 * 124.17793 * 90.00020 * 16 15 13 27 27 O 1.21230 * 127.15559 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47163 * 300.00254 * 1 2 3 30 30 H 1.09006 * 109.47107 * 59.99245 * 1 2 3 31 31 H 1.09002 * 109.46584 * 240.00208 * 2 1 3 32 32 H 1.08997 * 109.47170 * 120.00493 * 2 1 3 33 33 H 1.08995 * 109.47335 * 29.99533 * 4 3 2 34 34 H 1.08998 * 109.46938 * 149.99609 * 4 3 2 35 35 H 0.97005 * 119.99570 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46984 * 59.99867 * 15 13 3 37 37 H 1.08996 * 109.46890 * 299.99063 * 15 13 3 38 38 H 0.96997 * 126.87060 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.47339 * 177.47054 * 21 20 19 40 40 H 1.09009 * 109.46847 * 297.46891 * 21 20 19 41 41 H 1.08994 * 109.47319 * 57.46294 * 21 20 19 42 42 H 1.09001 * 109.47070 * 182.33562 * 22 20 19 43 43 H 1.08996 * 109.46954 * 62.32867 * 22 20 19 44 44 H 1.09002 * 109.47192 * 322.75203 * 23 22 20 45 45 H 1.09006 * 109.47027 * 51.50578 * 24 23 22 46 46 H 1.09005 * 109.47005 * 171.49739 * 24 23 22 47 47 H 1.08995 * 109.47736 * 291.50132 * 24 23 22 48 48 H 1.09007 * 109.46971 * 56.25122 * 25 23 22 49 49 H 1.09000 * 109.46634 * 176.24444 * 25 23 22 50 50 H 1.08992 * 109.47464 * 296.25039 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1266 -3.6175 9 14 5.9134 2.0962 -3.4171 10 1 6.6007 1.2402 -2.4172 11 1 5.9204 1.4181 -4.7382 12 1 6.6216 3.3971 -3.5247 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9923 1.3058 2.4723 16 7 2.3101 2.2032 3.5858 17 6 3.5165 2.2940 4.1572 18 8 4.4794 1.6387 3.8101 19 7 3.5450 3.1922 5.1629 20 6 2.1882 3.7583 5.2548 21 6 1.5738 3.4641 6.6248 22 6 2.2144 5.2651 4.9908 23 6 3.1537 5.9418 5.9913 24 6 4.5962 5.8277 5.4941 25 6 2.7763 7.4183 6.1269 26 6 1.4232 3.0387 4.1617 27 8 0.2563 3.1843 3.8670 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5140 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0284 34 1 2.0956 3.1410 -1.1383 35 1 3.6755 3.5171 -4.4435 36 1 2.6227 0.4186 2.5298 37 1 0.9444 1.0115 2.5302 38 1 4.3078 3.4225 5.7161 39 1 0.5899 3.9287 6.6892 40 1 1.4760 2.3863 6.7553 41 1 2.2180 3.8676 7.4061 42 1 1.2093 5.6714 5.1041 43 1 2.5692 5.4502 3.9770 44 1 3.0642 5.4532 6.9615 45 1 4.6544 6.1797 4.4641 46 1 5.2465 6.4356 6.1231 47 1 4.9153 4.7865 5.5408 48 1 1.7288 7.5004 6.4169 49 1 3.4016 7.8846 6.8883 50 1 2.9296 7.9217 5.1725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053134194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:02 Heat of formation + Delta-G solvation = -105.577235 kcal Electronic energy + Delta-G solvation = -31652.232284 eV Core-core repulsion = 27486.577421 eV Total energy + Delta-G solvation = -4165.654864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76026 -40.78251 -39.80890 -38.64762 -37.15938 -36.80039 -35.36562 -34.89040 -32.10038 -31.72071 -30.58973 -28.61986 -28.00742 -27.93239 -25.53117 -24.97719 -24.25532 -23.12974 -21.69892 -21.00942 -20.16954 -19.14032 -18.78458 -18.45307 -17.73379 -17.47965 -17.13775 -16.84431 -16.66057 -16.27412 -16.09280 -15.79032 -15.37666 -15.02979 -14.79326 -14.73618 -14.59542 -14.57649 -14.46715 -13.73726 -13.67574 -13.44484 -13.43863 -13.27872 -13.17667 -13.06390 -12.74278 -12.67329 -12.55828 -12.52063 -12.22955 -12.20703 -12.08346 -11.94555 -11.74425 -11.73116 -11.59222 -11.53894 -11.08733 -10.69099 -10.60846 -10.38726 -9.55310 -8.27225 -6.41725 0.49203 0.95475 1.31930 1.34537 1.46696 1.61088 1.80924 2.05959 2.27034 2.40307 2.80151 3.02326 3.40084 3.47864 3.61926 3.78730 3.93039 3.96722 4.02071 4.13827 4.20214 4.24869 4.36492 4.42424 4.58927 4.59918 4.67777 4.73848 4.83313 4.83652 4.89248 4.94393 4.95863 4.99186 5.01254 5.08186 5.14808 5.15604 5.25932 5.36871 5.39077 5.50223 5.51655 5.75104 5.77257 5.91909 6.00961 6.24699 6.59018 6.68635 7.00199 7.18447 7.33363 8.80297 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.003564 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.061752 B = 7854.897350 C = 8925.808681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.264 1.264 12 H -0.281 1.281 13 C 0.482 3.518 14 O -0.589 6.589 15 C 0.105 3.895 16 N -0.566 5.566 17 C 0.700 3.300 18 O -0.579 6.579 19 N -0.698 5.698 20 C 0.132 3.868 21 C -0.140 4.140 22 C -0.112 4.112 23 C -0.087 4.087 24 C -0.155 4.155 25 C -0.147 4.147 26 C 0.526 3.474 27 O -0.488 6.488 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.028 0.972 34 H -0.006 1.006 35 H 0.268 0.732 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.449 0.551 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.108 0.892 45 H 0.031 0.969 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -1.087 25.771 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.189 1.189 12 H -0.207 1.207 13 C 0.269 3.731 14 O -0.470 6.470 15 C -0.019 4.019 16 N -0.310 5.310 17 C 0.401 3.599 18 O -0.455 6.455 19 N -0.368 5.368 20 C 0.042 3.958 21 C -0.198 4.198 22 C -0.150 4.150 23 C -0.105 4.105 24 C -0.213 4.213 25 C -0.204 4.204 26 C 0.315 3.685 27 O -0.358 6.358 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.046 0.954 34 H 0.012 0.988 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.302 0.698 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.060 0.940 44 H 0.126 0.874 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.340 -0.742 25.181 25.752 hybrid contribution 1.271 0.288 -1.335 1.866 sum -4.069 -0.454 23.846 24.195 Atomic orbital electron populations 1.22168 0.94147 1.03880 1.01746 1.21886 0.95605 0.80876 1.04495 1.48251 1.63274 1.15318 1.05895 1.18718 0.95430 0.91362 0.80111 1.21711 0.97831 1.32086 1.06583 0.93193 1.25833 1.02378 0.94395 0.96359 1.70057 1.37635 1.34117 1.14805 0.85389 0.79007 0.78043 0.78504 1.19490 1.18882 1.20728 1.21343 0.77904 0.86954 0.86864 1.90644 1.47944 1.20526 1.87910 1.21683 1.06484 0.92548 0.81229 1.46021 1.12467 1.40158 1.32393 1.16128 0.82073 0.81138 0.80532 1.90983 1.36625 1.50050 1.67869 1.46097 1.13707 1.41054 1.35955 1.21665 0.81594 0.95469 0.97050 1.22101 1.02951 1.03787 0.90927 1.22009 1.03097 0.89748 1.00193 1.21180 0.93333 0.97074 0.98913 1.22141 0.96838 1.01560 1.00753 1.21858 1.02423 0.94473 1.01665 1.21479 0.86009 0.78175 0.82867 1.90751 1.15118 1.63740 1.66231 0.88009 0.92360 0.94095 0.90227 0.88012 0.95418 0.98821 0.92325 0.84135 0.83280 0.69849 0.88595 0.91076 0.87008 0.88137 0.93992 0.87358 0.94937 0.90562 0.92671 0.91327 0.90988 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 2 C 0.09 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -26.59 2.46 -826.16 -2.03 -28.62 16 4 C 0.27 14.92 5.16 85.63 0.44 15.36 16 5 C -0.54 -32.78 9.39 25.60 0.24 -32.54 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.56 5.46 84.65 0.46 1.03 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.97 46.81 29.54 68.60 2.03 48.83 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 C 0.48 21.73 7.74 87.66 0.68 22.41 16 14 O -0.59 -32.81 16.01 -3.04 -0.05 -32.86 16 15 C 0.11 3.37 4.73 85.63 0.41 3.78 16 16 N -0.57 -18.06 2.09 -776.89 -1.63 -19.69 16 17 C 0.70 22.40 8.63 179.33 1.55 23.95 16 18 O -0.58 -22.92 17.48 -3.83 -0.07 -22.98 16 19 N -0.70 -15.06 4.86 -439.33 -2.14 -17.19 16 20 C 0.13 2.58 1.00 2.99 0.00 2.58 16 21 C -0.14 -1.44 8.66 71.98 0.62 -0.82 16 22 C -0.11 -2.16 4.23 30.60 0.13 -2.03 16 23 C -0.09 -1.10 2.72 -10.79 -0.03 -1.13 16 24 C -0.16 -2.47 8.81 71.98 0.63 -1.84 16 25 C -0.15 -1.74 9.10 71.98 0.66 -1.08 16 26 C 0.53 15.16 6.98 87.94 0.61 15.78 16 27 O -0.49 -15.98 17.76 -2.88 -0.05 -16.04 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 30 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 32 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 33 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 34 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 35 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 36 H 0.14 3.91 7.12 -2.39 -0.02 3.89 16 37 H 0.15 3.75 7.05 -2.39 -0.02 3.73 16 38 H 0.45 7.26 6.19 -92.71 -0.57 6.68 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.11 0.49 6.54 -2.39 -0.02 0.47 16 42 H 0.10 1.72 7.88 -2.39 -0.02 1.70 16 43 H 0.04 1.16 7.80 -2.39 -0.02 1.14 16 44 H 0.11 0.74 6.08 -2.39 -0.01 0.72 16 45 H 0.03 0.71 7.93 -2.38 -0.02 0.69 16 46 H 0.08 0.93 8.13 -2.38 -0.02 0.91 16 47 H 0.05 0.86 4.70 -2.39 -0.01 0.85 16 48 H 0.07 0.67 8.05 -2.38 -0.02 0.65 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -88.44 403.24 4.39 -84.05 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.38 Total: 16.22 kcal Atomic # 6 Polarization: 37.89 SS G_CDS: 7.65 Total: 45.55 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -5.51 Total: -122.77 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -0.17 Total: -71.88 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -88.44 4.39 -84.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053134194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.527 kcal (2) G-P(sol) polarization free energy of solvation -88.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds