Wall clock time and date at job start Tue Mar 31 2020 22:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 5 5 C 1.34769 * 119.99798 * 274.99913 * 4 2 1 6 6 O 1.21280 * 120.00742 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99510 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47049 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47232 * 295.00528 * 8 7 5 10 10 C 1.52999 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47276 * 59.99741 * 10 9 8 12 12 C 1.53005 * 109.47201 * 300.00277 * 11 10 9 13 13 C 1.52995 * 109.47276 * 175.00269 * 8 7 5 14 14 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 15 15 O 1.21285 * 120.00039 * 239.99931 * 14 2 1 16 16 N 1.34774 * 119.99942 * 59.99862 * 14 2 1 17 17 C 1.46500 * 119.99881 * 180.02562 * 16 14 2 18 18 C 1.50701 * 109.47209 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99881 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00311 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00164 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99889 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99850 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00199 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47119 * 89.99709 * 25 23 21 27 27 H 1.48502 * 109.47204 * 210.00104 * 25 23 21 28 28 H 1.48497 * 109.46999 * 329.99591 * 25 23 21 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99239 * 94.99888 * 4 2 1 33 33 H 1.08995 * 109.47765 * 299.99977 * 7 5 4 34 34 H 1.09000 * 109.47068 * 60.00791 * 7 5 4 35 35 H 1.09000 * 109.47174 * 55.00229 * 8 7 5 36 36 H 1.09000 * 109.46798 * 299.99932 * 9 8 7 37 37 H 1.08995 * 109.47040 * 59.99820 * 9 8 7 38 38 H 1.09000 * 109.47174 * 299.99701 * 10 9 8 39 39 H 1.08997 * 109.46928 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.47653 * 180.02562 * 11 10 9 41 41 H 1.08994 * 109.47459 * 60.00013 * 11 10 9 42 42 H 1.09000 * 109.46798 * 299.99764 * 12 11 10 43 43 H 1.09000 * 109.47150 * 180.02562 * 12 11 10 44 44 H 1.08997 * 109.47357 * 300.00000 * 13 8 7 45 45 H 1.08994 * 109.47459 * 60.00013 * 13 8 7 46 46 H 0.96998 * 120.00125 * 359.97438 * 16 14 2 47 47 H 1.09000 * 109.47175 * 300.00022 * 17 16 14 48 48 H 1.09002 * 109.47092 * 59.99980 * 17 16 14 49 49 H 0.97000 * 119.99784 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4118 7 6 2.6489 -0.7289 3.5877 8 6 2.6999 0.2540 4.7590 9 6 3.7368 1.3409 4.4680 10 6 3.7883 2.3235 5.6397 11 6 4.1781 1.5754 6.9160 12 6 3.1413 0.4885 7.2070 13 6 3.0895 -0.4937 6.0357 14 6 2.0323 -0.7104 -1.2305 15 8 2.7296 -1.6965 -1.1192 16 7 1.7067 -0.2499 -2.4545 17 6 2.1945 -0.9408 -3.6507 18 6 1.6918 -0.2307 -4.8812 19 8 0.9949 0.7558 -4.7699 20 7 2.0164 -0.6917 -6.1054 21 6 1.5595 -0.0453 -7.2248 22 1 0.9390 0.8330 -7.1256 23 6 1.8947 -0.5204 -8.4867 24 7 2.6501 -1.5889 -8.6074 25 14 1.2715 0.3598 -10.0119 26 1 2.2494 1.4014 -10.4166 27 1 1.1060 -0.6196 -11.1158 28 1 -0.0366 0.9974 -9.7157 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 1.1525 33 1 1.9761 -1.5507 3.8326 34 1 3.6480 -1.1213 3.3985 35 1 1.7201 0.7128 4.8913 36 1 4.7166 0.8821 4.3357 37 1 3.4592 1.8736 3.5585 38 1 2.8085 2.7823 5.7724 39 1 4.5266 3.0980 5.4321 40 1 4.2144 2.2752 7.7508 41 1 5.1579 1.1165 6.7833 42 1 2.1615 0.9473 7.3397 43 1 3.4188 -0.0442 8.1166 44 1 2.3508 -1.2679 6.2431 45 1 4.0693 -0.9525 5.9035 46 1 1.1487 0.5386 -2.5435 47 1 3.2845 -0.9412 -3.6509 48 1 1.8308 -1.9683 -3.6506 49 1 2.5741 -1.4804 -6.1944 50 1 2.8844 -1.9203 -9.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343517370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:47 Heat of formation + Delta-G solvation = -147.870072 kcal Electronic energy + Delta-G solvation = -28908.298176 eV Core-core repulsion = 24740.809357 eV Total energy + Delta-G solvation = -4167.488819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.61446 -39.65089 -38.46331 -38.05630 -35.11533 -34.59717 -33.82059 -33.05900 -31.46714 -30.98821 -30.97214 -27.79629 -27.32840 -24.94878 -23.94416 -22.88773 -21.97329 -20.44537 -20.23153 -19.97582 -19.67657 -18.28645 -17.80987 -16.80260 -16.38624 -15.76866 -15.66636 -15.50473 -15.30805 -15.13994 -14.57729 -14.44307 -14.37506 -14.29413 -14.11831 -13.91062 -13.60956 -13.41467 -12.90327 -12.66974 -12.52205 -12.36459 -12.27071 -12.24930 -12.00317 -11.94649 -11.68152 -11.65636 -11.37748 -11.22448 -11.15787 -10.71875 -10.57119 -10.49053 -10.35944 -10.31516 -9.91418 -9.80602 -9.68113 -9.27868 -8.95714 -8.69757 -8.14996 -6.55866 -3.98106 2.44012 2.59437 2.74707 3.08836 3.19777 3.24555 3.39369 3.68095 4.07354 4.33569 4.38012 4.42961 4.60380 4.72510 4.79766 4.81034 4.91139 4.93836 5.01330 5.08195 5.12541 5.19276 5.21006 5.27981 5.33255 5.40118 5.44043 5.47538 5.60362 5.64548 5.76644 5.79842 5.85651 5.86409 5.90637 5.93286 5.97530 5.99488 6.01790 6.14602 6.24975 6.30184 6.50582 7.33076 7.42018 7.59850 7.86751 8.05698 8.21458 8.39880 9.00006 9.33796 9.81332 10.60842 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001585 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.497802 B =17657.196572 C =17782.228468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.115 0.885 4 N -0.714 5.714 5 C 0.516 3.484 6 O -0.537 6.537 7 C -0.137 4.137 8 C -0.070 4.070 9 C -0.121 4.121 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.509 3.491 15 O -0.547 6.547 16 N -0.699 5.699 17 C 0.109 3.891 18 C 0.426 3.574 19 O -0.597 6.597 20 N -0.547 5.547 21 C -0.306 4.306 22 H 0.106 0.894 23 C 0.027 3.973 24 N -0.894 5.894 25 Si 0.934 3.066 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.268 1.268 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.413 0.587 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.396 0.604 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -0.239 27.532 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.133 0.867 4 N -0.367 5.367 5 C 0.303 3.697 6 O -0.414 6.414 7 C -0.177 4.177 8 C -0.089 4.089 9 C -0.158 4.158 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.294 3.706 15 O -0.426 6.426 16 N -0.353 5.353 17 C -0.019 4.019 18 C 0.212 3.788 19 O -0.483 6.483 20 N -0.182 5.182 21 C -0.436 4.436 22 H 0.124 0.876 23 C -0.176 4.176 24 N -0.534 5.534 25 Si 0.760 3.240 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.252 0.748 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.230 0.770 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.118 0.452 27.485 27.512 hybrid contribution 0.013 -0.328 -1.116 1.163 sum 1.131 0.124 26.370 26.394 Atomic orbital electron populations 1.22136 0.92665 1.03174 1.03859 1.20716 0.95808 0.98145 0.83541 0.86728 1.45834 1.67479 1.14876 1.08558 1.20729 0.77190 0.87377 0.84391 1.90677 1.49815 1.15913 1.84992 1.21762 1.03277 0.99711 0.92965 1.20911 1.00628 0.94964 0.92365 1.21720 0.98047 0.96698 0.99379 1.21496 1.01498 0.97837 0.94661 1.21559 0.98868 0.97673 0.97722 1.21499 0.99566 0.96863 0.97657 1.21592 1.01586 0.97731 0.94376 1.20489 0.80546 0.84825 0.84766 1.90681 1.38541 1.26611 1.86740 1.45638 1.52820 1.32423 1.04395 1.20993 1.00017 0.96603 0.84286 1.19705 0.86834 0.87776 0.84514 1.90506 1.43116 1.28720 1.85994 1.41793 1.44912 1.27326 1.04164 1.19742 1.29789 1.11125 0.82913 0.87615 1.25332 0.96520 0.96317 0.99479 1.69614 1.35846 1.22466 1.25458 0.85801 0.79363 0.78733 0.80076 1.20236 1.20775 1.19292 0.90851 0.90468 0.91771 0.75376 0.88787 0.88721 0.90346 0.92701 0.89899 0.92023 0.92267 0.92361 0.92163 0.92017 0.92184 0.92004 0.91905 0.74788 0.89688 0.89665 0.77033 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.38 37.16 0.35 -1.31 16 2 C 0.13 1.48 2.98 -69.08 -0.21 1.28 16 3 H 0.12 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.71 -7.48 4.95 -54.93 -0.27 -7.75 16 5 C 0.52 5.42 7.51 -10.99 -0.08 5.33 16 6 O -0.54 -7.21 13.63 5.56 0.08 -7.13 16 7 C -0.14 -1.00 5.18 -27.88 -0.14 -1.15 16 8 C -0.07 -0.54 1.84 -90.62 -0.17 -0.71 16 9 C -0.12 -1.07 4.95 -26.73 -0.13 -1.20 16 10 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 11 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 12 C -0.12 -0.73 5.92 -26.76 -0.16 -0.89 16 13 C -0.12 -0.71 5.20 -26.76 -0.14 -0.85 16 14 C 0.51 7.32 7.22 -10.99 -0.08 7.24 16 15 O -0.55 -9.10 15.84 5.55 0.09 -9.02 16 16 N -0.70 -10.84 5.42 -61.47 -0.33 -11.17 16 17 C 0.11 1.90 6.15 -5.19 -0.03 1.86 16 18 C 0.43 9.46 7.85 -10.98 -0.09 9.37 16 19 O -0.60 -14.84 15.24 5.55 0.08 -14.76 16 20 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 21 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16 22 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 24 N -0.89 -23.47 13.05 55.50 0.72 -22.74 16 25 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.78 7.56 -51.93 -0.39 0.39 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.41 3.95 7.79 -40.82 -0.32 3.63 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.72 7.95 -51.93 -0.41 0.30 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.93 5.95 -51.93 -0.31 0.62 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.41 6.35 6.85 -40.82 -0.28 6.07 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.40 9.19 7.90 -40.82 -0.32 8.87 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -31.02 404.69 -8.33 -39.35 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -8.28 Total: 15.99 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.44 Total: 9.21 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.06 Total: -54.97 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: 0.25 Total: -30.91 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.02 -8.33 -39.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.517 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds