Wall clock time and date at job start Tue Mar 31 2020 22:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 5 5 C 1.34769 * 119.99798 * 274.99913 * 4 2 1 6 6 O 1.21280 * 120.00742 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99510 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47049 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47232 * 295.00528 * 8 7 5 10 10 C 1.52999 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47276 * 59.99741 * 10 9 8 12 12 C 1.53005 * 109.47201 * 300.00277 * 11 10 9 13 13 C 1.52995 * 109.47276 * 175.00269 * 8 7 5 14 14 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 15 15 O 1.21285 * 120.00039 * 239.99931 * 14 2 1 16 16 N 1.34774 * 119.99942 * 59.99862 * 14 2 1 17 17 C 1.46500 * 119.99881 * 180.02562 * 16 14 2 18 18 C 1.50701 * 109.47209 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99881 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00311 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00164 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99889 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99850 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00199 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47119 * 89.99709 * 25 23 21 27 27 H 1.48502 * 109.47204 * 210.00104 * 25 23 21 28 28 H 1.48497 * 109.46999 * 329.99591 * 25 23 21 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99239 * 94.99888 * 4 2 1 33 33 H 1.08995 * 109.47765 * 299.99977 * 7 5 4 34 34 H 1.09000 * 109.47068 * 60.00791 * 7 5 4 35 35 H 1.09000 * 109.47174 * 55.00229 * 8 7 5 36 36 H 1.09000 * 109.46798 * 299.99932 * 9 8 7 37 37 H 1.08995 * 109.47040 * 59.99820 * 9 8 7 38 38 H 1.09000 * 109.47174 * 299.99701 * 10 9 8 39 39 H 1.08997 * 109.46928 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.47653 * 180.02562 * 11 10 9 41 41 H 1.08994 * 109.47459 * 60.00013 * 11 10 9 42 42 H 1.09000 * 109.46798 * 299.99764 * 12 11 10 43 43 H 1.09000 * 109.47150 * 180.02562 * 12 11 10 44 44 H 1.08997 * 109.47357 * 300.00000 * 13 8 7 45 45 H 1.08994 * 109.47459 * 60.00013 * 13 8 7 46 46 H 0.96998 * 120.00125 * 359.97438 * 16 14 2 47 47 H 1.09000 * 109.47175 * 300.00022 * 17 16 14 48 48 H 1.09002 * 109.47092 * 59.99980 * 17 16 14 49 49 H 0.97000 * 119.99784 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4118 7 6 2.6489 -0.7289 3.5877 8 6 2.6999 0.2540 4.7590 9 6 3.7368 1.3409 4.4680 10 6 3.7883 2.3235 5.6397 11 6 4.1781 1.5754 6.9160 12 6 3.1413 0.4885 7.2070 13 6 3.0895 -0.4937 6.0357 14 6 2.0323 -0.7104 -1.2305 15 8 2.7296 -1.6965 -1.1192 16 7 1.7067 -0.2499 -2.4545 17 6 2.1945 -0.9408 -3.6507 18 6 1.6918 -0.2307 -4.8812 19 8 0.9949 0.7558 -4.7699 20 7 2.0164 -0.6917 -6.1054 21 6 1.5595 -0.0453 -7.2248 22 1 0.9390 0.8330 -7.1256 23 6 1.8947 -0.5204 -8.4867 24 7 2.6501 -1.5889 -8.6074 25 14 1.2715 0.3598 -10.0119 26 1 2.2494 1.4014 -10.4166 27 1 1.1060 -0.6196 -11.1158 28 1 -0.0366 0.9974 -9.7157 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 1.1525 33 1 1.9761 -1.5507 3.8326 34 1 3.6480 -1.1213 3.3985 35 1 1.7201 0.7128 4.8913 36 1 4.7166 0.8821 4.3357 37 1 3.4592 1.8736 3.5585 38 1 2.8085 2.7823 5.7724 39 1 4.5266 3.0980 5.4321 40 1 4.2144 2.2752 7.7508 41 1 5.1579 1.1165 6.7833 42 1 2.1615 0.9473 7.3397 43 1 3.4188 -0.0442 8.1166 44 1 2.3508 -1.2679 6.2431 45 1 4.0693 -0.9525 5.9035 46 1 1.1487 0.5386 -2.5435 47 1 3.2845 -0.9412 -3.6509 48 1 1.8308 -1.9683 -3.6506 49 1 2.5741 -1.4804 -6.1944 50 1 2.8844 -1.9203 -9.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343517370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:45 Heat of formation + Delta-G solvation = -169.259314 kcal Electronic energy + Delta-G solvation = -28909.225683 eV Core-core repulsion = 24740.809357 eV Total energy + Delta-G solvation = -4168.416326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.61691 -40.75462 -39.95190 -38.96042 -36.31453 -36.04262 -35.42075 -33.71648 -33.38446 -31.93734 -31.54012 -29.24429 -28.01771 -26.62326 -25.10488 -23.47101 -22.69309 -21.42314 -21.35530 -21.24371 -20.56688 -20.10124 -19.02225 -17.82404 -17.70031 -16.96505 -16.90739 -16.56870 -16.38562 -16.21248 -16.15401 -15.72817 -15.52318 -15.11847 -14.94318 -14.90680 -14.73397 -14.43271 -14.05169 -13.86444 -13.55209 -13.47798 -13.39773 -13.24273 -12.95746 -12.92063 -12.89269 -12.67890 -12.46151 -12.43069 -12.13073 -11.94385 -11.80699 -11.57582 -11.30055 -11.25600 -11.10024 -10.88578 -10.59155 -10.56150 -10.30135 -10.16306 -10.09075 -8.51733 -6.01821 1.35595 1.40036 1.42877 1.54272 1.60155 1.75902 1.90294 2.25562 2.38812 3.09559 3.15630 3.47496 3.72916 3.78220 3.86862 3.97573 4.04387 4.10706 4.20264 4.28384 4.36416 4.40850 4.41644 4.51070 4.60021 4.62635 4.65235 4.70862 4.74989 4.81160 4.86503 4.90847 5.07828 5.11956 5.17190 5.22353 5.28408 5.30878 5.35081 5.38059 5.38340 5.45841 5.58930 5.65812 5.90964 6.35346 6.48028 6.51927 6.97793 7.03405 7.24091 7.43461 7.93861 8.64948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001585 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.497802 B =17657.196572 C =17782.228468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 H 0.110 0.890 4 N -0.710 5.710 5 C 0.513 3.487 6 O -0.570 6.570 7 C -0.131 4.131 8 C -0.067 4.067 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.118 4.118 12 C -0.119 4.119 13 C -0.111 4.111 14 C 0.515 3.485 15 O -0.566 6.566 16 N -0.701 5.701 17 C 0.122 3.878 18 C 0.431 3.569 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.338 4.338 22 H 0.086 0.914 23 C -0.009 4.009 24 N -0.915 5.915 25 Si 0.996 3.004 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.416 0.584 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.415 0.585 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.399 0.601 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -1.311 28.662 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.127 0.873 4 N -0.364 5.364 5 C 0.302 3.698 6 O -0.449 6.449 7 C -0.171 4.171 8 C -0.086 4.086 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.148 4.148 14 C 0.302 3.698 15 O -0.446 6.446 16 N -0.355 5.355 17 C -0.006 4.006 18 C 0.218 3.782 19 O -0.512 6.512 20 N -0.194 5.194 21 C -0.468 4.468 22 H 0.104 0.896 23 C -0.210 4.210 24 N -0.555 5.555 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.233 0.767 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.333 -0.646 28.639 28.677 hybrid contribution -0.039 0.036 -1.405 1.406 sum 1.294 -0.610 27.234 27.272 Atomic orbital electron populations 1.22085 0.91427 1.03624 1.03993 1.20624 0.96646 0.97521 0.82830 0.87256 1.45849 1.67351 1.15084 1.08139 1.21337 0.76381 0.87053 0.85017 1.90674 1.51258 1.17490 1.85486 1.21818 1.04528 0.99812 0.90926 1.20871 0.99303 0.94873 0.93571 1.21672 0.98587 0.97088 0.98412 1.21491 1.00943 0.97837 0.95290 1.21544 0.99209 0.97876 0.96946 1.21520 0.99119 0.96785 0.98257 1.21567 1.02354 0.97725 0.93156 1.20840 0.79760 0.84399 0.84846 1.90672 1.39374 1.27562 1.86982 1.45642 1.53079 1.32476 1.04257 1.20817 1.00471 0.96624 0.82687 1.20444 0.85374 0.87098 0.85266 1.90486 1.44056 1.29997 1.86666 1.41835 1.45523 1.27626 1.04409 1.19738 1.31030 1.11525 0.84465 0.89589 1.26096 0.96331 0.96856 1.01686 1.69674 1.36245 1.23184 1.26374 0.84882 0.78638 0.77855 0.76707 1.19665 1.19648 1.19500 0.90744 0.90305 0.91121 0.74662 0.86281 0.87160 0.92079 0.92209 0.92785 0.93005 0.92506 0.91795 0.91750 0.92529 0.90899 0.90705 0.91119 0.74631 0.88600 0.88217 0.76662 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.38 71.98 0.68 -2.33 16 2 C 0.13 3.00 2.98 44.24 0.13 3.14 16 3 H 0.11 2.65 7.58 -2.39 -0.02 2.63 16 4 N -0.71 -14.02 4.95 -446.10 -2.21 -16.23 16 5 C 0.51 10.32 7.51 87.66 0.66 10.98 16 6 O -0.57 -15.42 13.63 -3.03 -0.04 -15.46 16 7 C -0.13 -1.66 5.18 29.85 0.15 -1.51 16 8 C -0.07 -0.97 1.84 -10.79 -0.02 -0.99 16 9 C -0.12 -2.09 4.95 30.60 0.15 -1.94 16 10 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 11 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 12 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 13 C -0.11 -1.11 5.20 30.58 0.16 -0.95 16 14 C 0.52 14.25 7.22 87.66 0.63 14.88 16 15 O -0.57 -18.00 15.84 -3.05 -0.05 -18.05 16 16 N -0.70 -21.14 5.42 -466.78 -2.53 -23.67 16 17 C 0.12 4.14 6.15 85.63 0.53 4.66 16 18 C 0.43 19.16 7.85 87.66 0.69 19.85 16 19 O -0.62 -31.33 15.24 -3.07 -0.05 -31.38 16 20 N -0.56 -27.28 5.29 -306.98 -1.62 -28.90 16 21 C -0.34 -18.33 9.68 84.04 0.81 -17.51 16 22 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 24 N -0.91 -47.76 13.05 21.66 0.28 -47.47 16 25 Si 1.00 41.23 29.55 68.60 2.03 43.26 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.53 7.56 -2.39 -0.02 1.51 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.42 7.29 7.79 -92.70 -0.72 6.57 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.10 7.95 -2.39 -0.02 1.08 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.26 5.95 -2.39 -0.01 1.25 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.42 12.56 6.85 -92.71 -0.64 11.92 16 47 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 48 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 50 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -66.47 404.69 0.27 -66.20 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -1.12 Total: 47.38 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.58 Total: 24.32 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -6.08 Total: -116.27 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -0.14 Total: -64.89 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -66.47 0.27 -66.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.058 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds