Wall clock time and date at job start Wed Apr 1 2020 00:32:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46507 * 109.46639 * 2 1
4 4 C 1.37092 * 120.00169 * 273.45467 * 3 2 1
5 5 H 1.08000 * 120.00290 * 179.22369 * 4 3 2
6 6 C 1.38956 * 119.99931 * 359.23319 * 4 3 2
7 7 N 1.31412 * 120.00089 * 28.37233 * 6 4 3
8 8 Si 1.86798 * 120.00036 * 208.37439 * 6 4 3
9 9 H 1.48500 * 109.47073 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47449 * 119.99736 * 8 6 4
11 11 H 1.48504 * 109.47132 * 240.00082 * 8 6 4
12 12 C 1.34778 * 119.99794 * 93.46208 * 3 2 1
13 13 O 1.21289 * 119.99820 * 5.55169 * 12 3 2
14 14 C 1.50696 * 119.99505 * 185.55435 * 12 3 2
15 15 H 1.08994 * 110.86367 * 31.25272 * 14 12 3
16 16 C 1.54628 * 110.97053 * 267.45251 * 14 12 3
17 17 C 1.51275 * 104.20162 * 217.08639 * 16 14 12
18 18 O 1.21281 * 124.94840 * 196.23581 * 17 16 14
19 19 N 1.34425 * 110.11545 * 16.25749 * 17 16 14
20 20 C 1.46496 * 124.35366 * 180.40787 * 19 17 16
21 21 C 1.52998 * 109.47014 * 90.02069 * 20 19 17
22 22 N 1.46907 * 109.46961 * 180.02562 * 21 20 19
23 23 C 1.47008 * 110.99937 * 293.63468 * 22 21 20
24 24 C 1.53097 * 109.25781 * 177.60926 * 23 22 21
25 25 O 1.43017 * 109.26100 * 56.85098 * 24 23 22
26 26 C 1.43023 * 113.73196 * 301.33095 * 25 24 23
27 27 C 1.47013 * 110.99718 * 170.00247 * 22 21 20
28 28 C 1.46768 * 111.29539 * 0.67004 * 19 17 16
29 29 H 1.09008 * 109.46886 * 172.93199 * 1 2 3
30 30 H 1.09004 * 109.47154 * 292.92390 * 1 2 3
31 31 H 1.08998 * 109.47876 * 52.92795 * 1 2 3
32 32 H 1.09001 * 109.47115 * 240.00672 * 2 1 3
33 33 H 1.09003 * 109.47661 * 119.99803 * 2 1 3
34 34 H 0.96992 * 120.00069 * 180.02562 * 7 6 4
35 35 H 1.09005 * 110.48251 * 98.40710 * 16 14 12
36 36 H 1.09003 * 110.60245 * 335.82500 * 16 14 12
37 37 H 1.08998 * 109.47018 * 330.02348 * 20 19 17
38 38 H 1.08997 * 109.47375 * 210.01977 * 20 19 17
39 39 H 1.09006 * 109.47453 * 299.99801 * 21 20 19
40 40 H 1.08998 * 109.47000 * 60.00268 * 21 20 19
41 41 H 1.08998 * 109.51048 * 297.54261 * 23 22 21
42 42 H 1.09000 * 109.50719 * 57.67647 * 23 22 21
43 43 H 1.08998 * 109.50476 * 296.91022 * 24 23 22
44 44 H 1.09002 * 109.50543 * 176.78241 * 24 23 22
45 45 H 1.08998 * 109.50797 * 298.72860 * 26 25 24
46 46 H 1.09000 * 109.53714 * 178.62763 * 26 25 24
47 47 H 1.09007 * 109.50732 * 302.32409 * 27 22 21
48 48 H 1.08996 * 109.51017 * 62.45476 * 27 22 21
49 49 H 1.09001 * 110.24297 * 101.72275 * 28 19 17
50 50 H 1.09005 * 110.24529 * 223.71857 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.1792 2.0515 -1.1851
5 1 2.5271 3.0739 -1.1844
6 6 1.8945 1.4153 -2.3872
7 7 0.9944 0.4587 -2.4273
8 14 2.7912 1.9199 -3.9462
9 1 3.7477 3.0126 -3.6355
10 1 3.5314 0.7537 -4.4912
11 1 1.8070 2.3953 -4.9516
12 6 2.3092 1.9932 1.1651
13 8 2.2638 1.3704 2.2049
14 6 2.6909 3.4509 1.1757
15 1 2.1912 3.9889 0.3702
16 6 4.2252 3.6219 1.0870
17 6 4.5191 4.8050 1.9828
18 8 5.5525 5.4399 1.9784
19 7 3.4685 5.0499 2.7848
20 6 3.4156 6.1324 3.7705
21 6 2.8407 7.3902 3.1162
22 7 2.7882 8.4759 4.1045
23 6 1.8227 8.1717 5.1705
24 6 1.8435 9.2982 6.2071
25 8 1.5603 10.5411 5.5588
26 6 2.4817 10.8690 4.5152
27 6 2.4673 9.7585 3.4615
28 6 2.3837 4.0896 2.5504
29 1 -0.3633 -1.0199 -0.1265
30 1 -0.3634 0.4003 0.9465
31 1 -0.3635 0.6195 -0.8199
32 1 1.8933 -0.5137 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.7959 0.0144 -3.2664
35 1 4.5265 3.8357 0.0615
36 1 4.7324 2.7298 1.4545
37 1 4.4212 6.3403 4.1361
38 1 2.7804 5.8338 4.6043
39 1 3.4760 7.6889 2.2823
40 1 1.8351 7.1823 2.7506
41 1 0.8233 8.0884 4.7436
42 1 2.0941 7.2311 5.6498
43 1 2.8279 9.3463 6.6725
44 1 1.0888 9.1051 6.9695
45 1 3.4847 10.9630 4.9314
46 1 2.1893 11.8123 4.0539
47 1 3.2092 9.9762 2.6932
48 1 1.4782 9.7005 3.0072
49 1 2.3788 3.3283 3.3305
50 1 1.4237 4.6051 2.5194
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000369018588.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:32:12
Heat of formation + Delta-G solvation = -85.186260 kcal
Electronic energy + Delta-G solvation = -30548.968186 eV
Core-core repulsion = 26384.197541 eV
Total energy + Delta-G solvation = -4164.770645 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.46203 -39.76032 -38.49761 -36.54239 -35.89892 -35.03412 -32.89297 -31.68425
-31.50512 -30.10390 -29.06230 -27.30540 -26.36348 -24.99379 -24.35963 -23.45801
-22.37017 -21.10516 -20.66149 -19.23712 -19.10782 -17.20726 -17.15684 -16.64386
-16.47004 -16.07911 -15.71461 -15.37958 -15.25126 -15.11501 -14.63073 -14.46566
-14.25475 -14.09421 -13.91978 -13.60370 -13.29228 -13.04548 -12.84180 -12.59182
-12.42230 -12.28050 -12.20472 -11.99759 -11.73849 -11.66713 -11.43980 -11.23133
-11.15716 -10.98731 -10.86939 -10.74485 -10.64351 -10.47073 -10.37706 -10.01806
-9.76716 -9.60541 -8.96986 -8.77552 -8.58677 -8.43712 -7.98925 -6.55575
-3.96358 2.78122 2.97043 3.01120 3.15696 3.18484 3.51724 3.62674
3.72420 3.95707 4.46083 4.52907 4.62054 4.66406 4.76821 4.77330
4.83648 4.89331 4.98523 5.09743 5.13407 5.19230 5.28444 5.35687
5.42156 5.46043 5.48118 5.51728 5.61580 5.68720 5.78363 5.85907
6.01338 6.05705 6.21359 6.42002 6.49364 6.54844 6.61307 6.69100
6.74149 6.75722 6.81358 6.95060 7.21711 7.26852 7.31305 7.57255
7.72749 8.27903 8.38647 8.92181 9.38144 9.78202 10.41398
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.015684 B = 0.002525 C = 0.002435
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1784.846331 B =11087.030531 C =11495.641491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.130 3.870
3 N -0.429 5.429
4 C -0.346 4.346
5 H 0.104 0.896
6 C 0.044 3.956
7 N -0.844 5.844
8 Si 0.909 3.091
9 H -0.266 1.266
10 H -0.278 1.278
11 H -0.282 1.282
12 C 0.455 3.545
13 O -0.611 6.611
14 C -0.102 4.102
15 H 0.106 0.894
16 C -0.135 4.135
17 C 0.523 3.477
18 O -0.540 6.540
19 N -0.619 5.619
20 C 0.132 3.868
21 C 0.040 3.960
22 N -0.534 5.534
23 C 0.011 3.989
24 C 0.064 3.936
25 O -0.387 6.387
26 C 0.064 3.936
27 C 0.018 3.982
28 C 0.116 3.884
29 H 0.036 0.964
30 H 0.019 0.981
31 H 0.089 0.911
32 H 0.090 0.910
33 H 0.044 0.956
34 H 0.269 0.731
35 H 0.106 0.894
36 H 0.106 0.894
37 H 0.089 0.911
38 H 0.077 0.923
39 H 0.081 0.919
40 H 0.040 0.960
41 H 0.045 0.955
42 H 0.090 0.910
43 H 0.060 0.940
44 H 0.098 0.902
45 H 0.060 0.940
46 H 0.098 0.902
47 H 0.087 0.913
48 H 0.044 0.956
49 H 0.092 0.908
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.100 13.274 9.223 16.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.007 3.993
3 N -0.145 5.145
4 C -0.473 4.473
5 H 0.121 0.879
6 C -0.163 4.163
7 N -0.480 5.480
8 Si 0.735 3.265
9 H -0.190 1.190
10 H -0.204 1.204
11 H -0.208 1.208
12 C 0.243 3.757
13 O -0.499 6.499
14 C -0.124 4.124
15 H 0.124 0.876
16 C -0.176 4.176
17 C 0.311 3.689
18 O -0.417 6.417
19 N -0.353 5.353
20 C 0.010 3.990
21 C -0.089 4.089
22 N -0.260 5.260
23 C -0.117 4.117
24 C -0.013 4.013
25 O -0.306 6.306
26 C -0.013 4.013
27 C -0.110 4.110
28 C -0.007 4.007
29 H 0.055 0.945
30 H 0.038 0.962
31 H 0.108 0.892
32 H 0.108 0.892
33 H 0.063 0.937
34 H 0.080 0.920
35 H 0.125 0.875
36 H 0.124 0.876
37 H 0.107 0.893
38 H 0.095 0.905
39 H 0.100 0.900
40 H 0.059 0.941
41 H 0.063 0.937
42 H 0.108 0.892
43 H 0.079 0.921
44 H 0.116 0.884
45 H 0.079 0.921
46 H 0.116 0.884
47 H 0.106 0.894
48 H 0.062 0.938
49 H 0.110 0.890
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.609 13.344 9.855 16.600
hybrid contribution -0.428 -0.127 -1.580 1.641
sum 0.181 13.218 8.275 15.595
Atomic orbital electron populations
1.21970 0.96484 1.00526 1.00413 1.21303 0.94553 0.82899 1.00513
1.43858 1.53822 1.11863 1.04932 1.19680 1.45702 0.99293 0.82583
0.87882 1.25177 0.95150 0.96548 0.99392 1.70276 1.25436 1.24877
1.27447 0.86170 0.79995 0.78982 0.81381 1.19044 1.20381 1.20828
1.19322 0.84783 0.87829 0.83762 1.90526 1.60859 1.66423 1.32104
1.22011 0.95872 0.97014 0.97483 0.87586 1.22215 0.96289 0.97728
1.01331 1.21054 0.82465 0.84775 0.80568 1.90681 1.27101 1.54044
1.69910 1.48280 1.17915 1.30616 1.38518 1.21212 1.02935 0.84827
0.90063 1.22534 1.00405 0.91138 0.94828 1.62132 1.48953 1.02443
1.12471 1.22897 0.94680 0.99982 0.94120 1.22674 1.01756 0.82820
0.94056 1.87984 1.53281 1.38823 1.50501 1.22667 0.93804 0.96955
0.87844 1.22787 1.00763 0.90004 0.97455 1.22134 0.89249 0.91226
0.98103 0.94535 0.96192 0.89247 0.89150 0.93729 0.92006 0.87524
0.87618 0.89264 0.90520 0.90024 0.94125 0.93682 0.89200 0.92144
0.88392 0.92147 0.88428 0.89423 0.93797 0.88971 0.90951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 9.47 37.15 0.35 -2.61 16
2 C 0.13 3.00 5.47 -4.04 -0.02 2.98 16
3 N -0.43 -9.96 2.63 -114.81 -0.30 -10.26 16
4 C -0.35 -7.96 9.17 -14.93 -0.14 -8.10 16
5 H 0.10 2.23 6.07 -52.49 -0.32 1.91 16
6 C 0.04 1.00 4.97 -17.47 -0.09 0.92 16
7 N -0.84 -19.85 8.24 55.50 0.46 -19.40 16
8 Si 0.91 18.12 29.64 -169.99 -5.04 13.08 16
9 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
10 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16
11 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16
12 C 0.46 9.98 6.72 -10.99 -0.07 9.90 16
13 O -0.61 -14.77 15.18 5.55 0.08 -14.69 16
14 C -0.10 -1.80 2.61 -90.04 -0.24 -2.04 16
15 H 0.11 1.84 6.57 -51.93 -0.34 1.50 16
16 C -0.13 -2.29 6.40 -26.75 -0.17 -2.47 16
17 C 0.52 8.97 8.02 -10.86 -0.09 8.88 16
18 O -0.54 -10.70 17.59 5.56 0.10 -10.60 16
19 N -0.62 -9.12 2.93 -172.30 -0.51 -9.63 16
20 C 0.13 1.61 5.87 -4.05 -0.02 1.59 16
21 C 0.04 0.45 5.28 -3.82 -0.02 0.43 16
22 N -0.53 -5.46 4.73 -234.31 -1.11 -6.56 16
23 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16
24 C 0.06 0.53 7.01 37.21 0.26 0.79 16
25 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16
26 C 0.06 0.54 7.01 37.21 0.26 0.80 16
27 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16
28 C 0.12 1.77 6.85 -3.02 -0.02 1.75 16
29 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16
30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.09 2.11 6.30 -51.93 -0.33 1.79 16
32 H 0.09 2.17 6.00 -51.93 -0.31 1.86 16
33 H 0.04 1.04 7.26 -51.93 -0.38 0.66 16
34 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16
35 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16
36 H 0.11 1.86 7.89 -51.93 -0.41 1.45 16
37 H 0.09 1.19 7.92 -51.93 -0.41 0.78 16
38 H 0.08 0.80 6.52 -51.93 -0.34 0.46 16
39 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16
40 H 0.04 0.47 8.12 -51.93 -0.42 0.04 16
41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16
42 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16
43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
47 H 0.09 0.75 8.09 -51.92 -0.42 0.33 16
48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16
49 H 0.09 1.55 6.90 -51.93 -0.36 1.19 16
50 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
LS Contribution 390.78 15.07 5.89 5.89
Total: -1.00 -28.40 390.78 -9.00 -37.40
By element:
Atomic # 1 Polarization: 14.16 SS G_CDS: -8.15 Total: 6.02 kcal
Atomic # 6 Polarization: 13.10 SS G_CDS: -0.05 Total: 13.05 kcal
Atomic # 7 Polarization: -44.40 SS G_CDS: -1.46 Total: -45.85 kcal
Atomic # 8 Polarization: -29.38 SS G_CDS: -0.20 Total: -29.58 kcal
Atomic # 14 Polarization: 18.12 SS G_CDS: -5.04 Total: 13.08 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -28.40 -9.00 -37.40 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000369018588.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.785 kcal
(2) G-P(sol) polarization free energy of solvation -28.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds