Wall clock time and date at job start Wed Apr 1 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47099 * 2 1 4 4 C 1.37102 * 120.00084 * 263.31713 * 3 2 1 5 5 H 1.07994 * 120.00179 * 193.26086 * 4 3 2 6 6 C 1.38953 * 119.99667 * 13.26319 * 4 3 2 7 7 N 1.31411 * 119.99973 * 21.23054 * 6 4 3 8 8 Si 1.86794 * 119.99845 * 201.22779 * 6 4 3 9 9 H 1.48499 * 109.47205 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46986 * 120.00313 * 8 6 4 11 11 H 1.48500 * 109.47407 * 240.00235 * 8 6 4 12 12 C 1.34780 * 120.00040 * 83.31996 * 3 2 1 13 13 O 1.21296 * 119.99886 * 184.08739 * 12 3 2 14 14 C 1.50697 * 120.00249 * 4.08313 * 12 3 2 15 15 H 1.09001 * 110.85536 * 323.10959 * 14 12 3 16 16 C 1.54623 * 110.97071 * 86.89717 * 14 12 3 17 17 C 1.51277 * 104.19767 * 142.91651 * 16 14 12 18 18 O 1.21285 * 124.94171 * 163.72451 * 17 16 14 19 19 N 1.34417 * 110.11643 * 343.75386 * 17 16 14 20 20 C 1.46498 * 124.35083 * 179.59544 * 19 17 16 21 21 C 1.52998 * 109.47438 * 90.02112 * 20 19 17 22 22 N 1.46896 * 109.47086 * 180.02562 * 21 20 19 23 23 C 1.47018 * 111.00247 * 46.31582 * 22 21 20 24 24 C 1.53093 * 109.25841 * 182.34903 * 23 22 21 25 25 O 1.43008 * 109.29548 * 303.22057 * 24 23 22 26 26 C 1.43013 * 113.74281 * 58.64565 * 25 24 23 27 27 C 1.47020 * 111.00207 * 169.99839 * 22 21 20 28 28 C 1.46762 * 111.30090 * 359.85179 * 19 17 16 29 29 H 1.09000 * 109.47497 * 300.00278 * 1 2 3 30 30 H 1.09007 * 109.46764 * 60.00688 * 1 2 3 31 31 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47343 * 239.99253 * 2 1 3 33 33 H 1.09007 * 109.46863 * 119.99860 * 2 1 3 34 34 H 0.96994 * 119.99909 * 179.97438 * 7 6 4 35 35 H 1.09000 * 110.48685 * 24.24000 * 16 14 12 36 36 H 1.09000 * 110.48676 * 261.59978 * 16 14 12 37 37 H 1.08998 * 109.46976 * 330.01537 * 20 19 17 38 38 H 1.09001 * 109.47306 * 210.02059 * 20 19 17 39 39 H 1.08998 * 109.47506 * 59.99750 * 21 20 19 40 40 H 1.09007 * 109.46771 * 299.99538 * 21 20 19 41 41 H 1.09003 * 109.46915 * 62.43872 * 23 22 21 42 42 H 1.08998 * 109.54475 * 302.30862 * 23 22 21 43 43 H 1.09001 * 109.50949 * 183.26081 * 24 23 22 44 44 H 1.09004 * 109.50586 * 63.17532 * 24 23 22 45 45 H 1.09004 * 109.50160 * 61.26609 * 26 25 24 46 46 H 1.08996 * 109.50934 * 181.34755 * 26 25 24 47 47 H 1.09000 * 109.50592 * 57.66535 * 27 22 21 48 48 H 1.09008 * 109.53930 * 297.56543 * 27 22 21 49 49 H 1.08994 * 110.24504 * 135.75164 * 28 19 17 50 50 H 1.09000 * 110.25080 * 257.75771 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3771 1.9814 -1.1793 5 1 2.9321 2.9077 -1.1667 6 6 2.0265 1.3979 -2.3906 7 7 1.0321 0.5404 -2.4434 8 14 2.9686 1.8325 -3.9439 9 1 4.0342 2.8142 -3.6183 10 1 3.5833 0.6048 -4.5099 11 1 2.0376 2.4236 -4.9385 12 6 2.1149 2.0618 1.1593 13 8 2.4482 3.2280 1.1519 14 6 1.8088 1.3739 2.4647 15 1 0.9809 0.6743 2.3499 16 6 3.0626 0.6609 3.0219 17 6 2.9679 0.8592 4.5186 18 8 3.5931 0.2276 5.3439 19 7 2.0896 1.8369 4.8007 20 6 1.7520 2.2790 6.1560 21 6 2.6989 3.4049 6.5759 22 7 2.3607 3.8477 7.9351 23 6 2.1696 2.6983 8.8316 24 6 1.7623 3.2020 10.2187 25 8 2.7570 4.1080 10.7033 26 6 2.9675 5.2397 9.8546 27 6 3.3880 4.7568 8.4640 28 6 1.5077 2.4004 3.5768 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.7872 0.1333 -3.2891 35 1 3.9694 1.1238 2.6324 36 1 3.0390 -0.4006 2.7754 37 1 1.8534 1.4421 6.8469 38 1 0.7246 2.6427 6.1742 39 1 2.5975 4.2418 5.8850 40 1 3.7264 3.0412 6.5579 41 1 3.1013 2.1376 8.9070 42 1 1.3865 2.0524 8.4344 43 1 1.6758 2.3570 10.9019 44 1 0.8033 3.7159 10.1522 45 1 2.0436 5.8130 9.7768 46 1 3.7520 5.8689 10.2748 47 1 3.4941 5.6130 7.7980 48 1 4.3398 4.2301 8.5341 49 1 0.4315 2.5263 3.6942 50 1 1.9766 3.3558 3.3414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369018589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:17 Heat of formation + Delta-G solvation = -83.947979 kcal Electronic energy + Delta-G solvation = -30528.950602 eV Core-core repulsion = 26364.233653 eV Total energy + Delta-G solvation = -4164.716949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.60308 -39.78906 -38.51566 -36.61885 -35.95006 -35.07399 -33.00694 -31.79441 -31.46640 -29.57817 -29.32731 -27.46188 -26.58723 -25.14206 -24.38470 -22.95776 -22.44934 -21.83125 -20.64916 -19.37989 -18.67867 -17.33004 -17.05386 -16.69471 -16.47835 -16.21360 -15.75933 -15.41607 -15.35260 -15.13555 -14.80611 -14.50517 -14.24281 -14.16919 -13.85090 -13.41880 -13.25070 -13.09132 -12.98921 -12.71481 -12.61111 -12.50097 -12.25326 -11.98686 -11.70605 -11.63760 -11.35878 -11.25445 -11.18748 -11.07627 -10.93968 -10.83073 -10.71233 -10.38466 -10.21294 -10.00312 -9.97064 -9.73439 -9.02979 -8.71441 -8.70185 -8.44162 -7.83262 -6.41964 -3.90945 2.67599 2.88310 3.07477 3.21169 3.27544 3.51376 3.63823 3.69139 4.02365 4.43135 4.52139 4.63344 4.67564 4.69422 4.75756 4.84378 4.88857 5.00021 5.05008 5.11020 5.18174 5.24417 5.27740 5.32494 5.33743 5.48503 5.51927 5.53941 5.67398 5.72034 5.73041 5.77865 5.84963 6.02185 6.14392 6.27258 6.45536 6.46958 6.54709 6.60230 6.68817 6.71239 6.81627 7.15128 7.16569 7.38822 7.70720 7.98955 8.25672 8.40558 9.07648 9.32587 9.85881 10.56556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.002226 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.813813 B =12577.252705 C =13006.490727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 N -0.433 5.433 4 C -0.304 4.304 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.867 5.867 8 Si 0.922 3.078 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.450 3.550 13 O -0.589 6.589 14 C -0.114 4.114 15 H 0.102 0.898 16 C -0.139 4.139 17 C 0.523 3.477 18 O -0.542 6.542 19 N -0.617 5.617 20 C 0.126 3.874 21 C 0.038 3.962 22 N -0.533 5.533 23 C 0.008 3.992 24 C 0.064 3.936 25 O -0.387 6.387 26 C 0.065 3.935 27 C 0.017 3.983 28 C 0.117 3.883 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.078 0.922 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 1.906 17.590 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.002 4.002 3 N -0.150 5.150 4 C -0.432 4.432 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.506 5.506 8 Si 0.748 3.252 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.237 3.763 13 O -0.475 6.475 14 C -0.136 4.136 15 H 0.120 0.880 16 C -0.180 4.180 17 C 0.311 3.689 18 O -0.419 6.419 19 N -0.351 5.351 20 C 0.003 3.997 21 C -0.091 4.091 22 N -0.259 5.259 23 C -0.120 4.120 24 C -0.013 4.013 25 O -0.306 6.306 26 C -0.012 4.012 27 C -0.111 4.111 28 C -0.006 4.006 29 H 0.041 0.959 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.515 2.269 18.046 18.251 hybrid contribution 0.839 -0.401 -1.216 1.531 sum -0.676 1.868 16.829 16.946 Atomic orbital electron populations 1.22231 0.96453 0.99989 1.02393 1.21393 0.94680 0.83554 1.00544 1.43772 1.54612 1.11162 1.05427 1.19775 1.32513 1.09047 0.81860 0.87856 1.25248 0.95663 0.97135 0.99267 1.70062 1.23754 1.30066 1.26751 0.85937 0.79795 0.78436 0.80994 1.19258 1.20609 1.20835 1.19346 0.85728 0.86833 0.84377 1.90516 1.53866 1.16517 1.86576 1.22145 0.98602 0.97988 0.94869 0.88006 1.22289 1.00210 1.03380 0.92098 1.20984 0.77949 0.78561 0.91377 1.90683 1.46909 1.50083 1.54265 1.48283 1.43477 1.36865 1.06484 1.21425 0.99025 0.96866 0.82345 1.22564 0.98296 0.98695 0.89535 1.62284 1.44990 1.16563 1.02019 1.22934 1.01907 0.93289 0.93899 1.22678 0.91390 0.93297 0.93894 1.87981 1.59522 1.35265 1.47824 1.22659 1.01403 0.88175 0.88975 1.22801 0.93451 0.97638 0.97240 1.22048 0.98970 0.98107 0.81468 0.95874 0.88204 0.94376 0.88394 0.94851 0.92236 0.87375 0.87779 0.89963 0.89415 0.89680 0.94037 0.93552 0.89025 0.88431 0.92176 0.92154 0.88432 0.89383 0.93765 0.90376 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.48 37.16 0.35 -2.60 16 2 C 0.12 2.49 4.93 -4.04 -0.02 2.47 16 3 N -0.43 -10.12 2.64 -114.81 -0.30 -10.42 16 4 C -0.30 -7.88 9.39 -14.93 -0.14 -8.03 16 5 H 0.10 2.85 7.35 -52.49 -0.39 2.47 16 6 C 0.03 0.73 4.93 -17.47 -0.09 0.65 16 7 N -0.87 -20.94 8.42 55.50 0.47 -20.47 16 8 Si 0.92 19.55 29.60 -169.99 -5.03 14.51 16 9 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.45 9.90 6.72 -10.99 -0.07 9.83 16 13 O -0.59 -14.91 15.23 5.54 0.08 -14.82 16 14 C -0.11 -1.90 2.50 -90.24 -0.23 -2.13 16 15 H 0.10 1.58 5.66 -51.93 -0.29 1.29 16 16 C -0.14 -2.20 6.11 -26.75 -0.16 -2.36 16 17 C 0.52 8.49 8.02 -10.86 -0.09 8.40 16 18 O -0.54 -10.22 17.59 5.55 0.10 -10.12 16 19 N -0.62 -8.66 2.93 -172.53 -0.51 -9.16 16 20 C 0.13 1.45 5.20 -4.04 -0.02 1.43 16 21 C 0.04 0.43 5.60 -3.83 -0.02 0.41 16 22 N -0.53 -5.43 4.87 -234.30 -1.14 -6.58 16 23 C 0.01 0.07 4.94 -3.71 -0.02 0.06 16 24 C 0.06 0.54 7.01 37.21 0.26 0.80 16 25 O -0.39 -3.98 10.83 -35.23 -0.38 -4.36 16 26 C 0.06 0.54 7.01 37.21 0.26 0.80 16 27 C 0.02 0.16 5.63 -3.71 -0.02 0.14 16 28 C 0.12 1.72 6.84 -3.22 -0.02 1.70 16 29 H 0.02 0.41 6.88 -51.93 -0.36 0.05 16 30 H 0.10 2.25 6.08 -51.93 -0.32 1.94 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 2.20 6.05 -51.93 -0.31 1.88 16 33 H 0.03 0.59 6.09 -51.93 -0.32 0.27 16 34 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 35 H 0.11 1.81 7.89 -51.93 -0.41 1.40 16 36 H 0.10 1.49 7.61 -51.93 -0.40 1.10 16 37 H 0.08 0.97 6.06 -51.93 -0.31 0.65 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.56 8.08 -51.92 -0.42 0.14 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.77 6.05 -51.93 -0.31 0.46 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 1.57 6.85 -51.93 -0.36 1.21 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -30.11 386.27 -8.90 -39.01 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.98 Total: 5.01 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.03 Total: 11.58 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.48 Total: -46.63 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.20 Total: -29.31 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.11 -8.90 -39.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369018589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.936 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds