Wall clock time and date at job start Wed Apr 1 2020 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47099 * 2 1 4 4 C 1.37102 * 120.00084 * 263.31713 * 3 2 1 5 5 H 1.07994 * 120.00179 * 193.26086 * 4 3 2 6 6 C 1.38953 * 119.99667 * 13.26319 * 4 3 2 7 7 N 1.31411 * 119.99973 * 21.23054 * 6 4 3 8 8 Si 1.86794 * 119.99845 * 201.22779 * 6 4 3 9 9 H 1.48499 * 109.47205 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46986 * 120.00313 * 8 6 4 11 11 H 1.48500 * 109.47407 * 240.00235 * 8 6 4 12 12 C 1.34780 * 120.00040 * 83.31996 * 3 2 1 13 13 O 1.21296 * 119.99886 * 184.08739 * 12 3 2 14 14 C 1.50697 * 120.00249 * 4.08313 * 12 3 2 15 15 H 1.09001 * 110.85536 * 323.10959 * 14 12 3 16 16 C 1.54623 * 110.97071 * 86.89717 * 14 12 3 17 17 C 1.51277 * 104.19767 * 142.91651 * 16 14 12 18 18 O 1.21285 * 124.94171 * 163.72451 * 17 16 14 19 19 N 1.34417 * 110.11643 * 343.75386 * 17 16 14 20 20 C 1.46498 * 124.35083 * 179.59544 * 19 17 16 21 21 C 1.52998 * 109.47438 * 90.02112 * 20 19 17 22 22 N 1.46896 * 109.47086 * 180.02562 * 21 20 19 23 23 C 1.47018 * 111.00247 * 46.31582 * 22 21 20 24 24 C 1.53093 * 109.25841 * 182.34903 * 23 22 21 25 25 O 1.43008 * 109.29548 * 303.22057 * 24 23 22 26 26 C 1.43013 * 113.74281 * 58.64565 * 25 24 23 27 27 C 1.47020 * 111.00207 * 169.99839 * 22 21 20 28 28 C 1.46762 * 111.30090 * 359.85179 * 19 17 16 29 29 H 1.09000 * 109.47497 * 300.00278 * 1 2 3 30 30 H 1.09007 * 109.46764 * 60.00688 * 1 2 3 31 31 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47343 * 239.99253 * 2 1 3 33 33 H 1.09007 * 109.46863 * 119.99860 * 2 1 3 34 34 H 0.96994 * 119.99909 * 179.97438 * 7 6 4 35 35 H 1.09000 * 110.48685 * 24.24000 * 16 14 12 36 36 H 1.09000 * 110.48676 * 261.59978 * 16 14 12 37 37 H 1.08998 * 109.46976 * 330.01537 * 20 19 17 38 38 H 1.09001 * 109.47306 * 210.02059 * 20 19 17 39 39 H 1.08998 * 109.47506 * 59.99750 * 21 20 19 40 40 H 1.09007 * 109.46771 * 299.99538 * 21 20 19 41 41 H 1.09003 * 109.46915 * 62.43872 * 23 22 21 42 42 H 1.08998 * 109.54475 * 302.30862 * 23 22 21 43 43 H 1.09001 * 109.50949 * 183.26081 * 24 23 22 44 44 H 1.09004 * 109.50586 * 63.17532 * 24 23 22 45 45 H 1.09004 * 109.50160 * 61.26609 * 26 25 24 46 46 H 1.08996 * 109.50934 * 181.34755 * 26 25 24 47 47 H 1.09000 * 109.50592 * 57.66535 * 27 22 21 48 48 H 1.09008 * 109.53930 * 297.56543 * 27 22 21 49 49 H 1.08994 * 110.24504 * 135.75164 * 28 19 17 50 50 H 1.09000 * 110.25080 * 257.75771 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3771 1.9814 -1.1793 5 1 2.9321 2.9077 -1.1667 6 6 2.0265 1.3979 -2.3906 7 7 1.0321 0.5404 -2.4434 8 14 2.9686 1.8325 -3.9439 9 1 4.0342 2.8142 -3.6183 10 1 3.5833 0.6048 -4.5099 11 1 2.0376 2.4236 -4.9385 12 6 2.1149 2.0618 1.1593 13 8 2.4482 3.2280 1.1519 14 6 1.8088 1.3739 2.4647 15 1 0.9809 0.6743 2.3499 16 6 3.0626 0.6609 3.0219 17 6 2.9679 0.8592 4.5186 18 8 3.5931 0.2276 5.3439 19 7 2.0896 1.8369 4.8007 20 6 1.7520 2.2790 6.1560 21 6 2.6989 3.4049 6.5759 22 7 2.3607 3.8477 7.9351 23 6 2.1696 2.6983 8.8316 24 6 1.7623 3.2020 10.2187 25 8 2.7570 4.1080 10.7033 26 6 2.9675 5.2397 9.8546 27 6 3.3880 4.7568 8.4640 28 6 1.5077 2.4004 3.5768 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.7872 0.1333 -3.2891 35 1 3.9694 1.1238 2.6324 36 1 3.0390 -0.4006 2.7754 37 1 1.8534 1.4421 6.8469 38 1 0.7246 2.6427 6.1742 39 1 2.5975 4.2418 5.8850 40 1 3.7264 3.0412 6.5579 41 1 3.1013 2.1376 8.9070 42 1 1.3865 2.0524 8.4344 43 1 1.6758 2.3570 10.9019 44 1 0.8033 3.7159 10.1522 45 1 2.0436 5.8130 9.7768 46 1 3.7520 5.8689 10.2748 47 1 3.4941 5.6130 7.7980 48 1 4.3398 4.2301 8.5341 49 1 0.4315 2.5263 3.6942 50 1 1.9766 3.3558 3.3414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369018589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:15 Heat of formation + Delta-G solvation = -104.379128 kcal Electronic energy + Delta-G solvation = -30529.836563 eV Core-core repulsion = 26364.233653 eV Total energy + Delta-G solvation = -4165.602910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.89719 -40.62419 -40.10554 -37.70350 -37.21169 -36.71853 -34.29234 -33.46191 -32.21488 -31.21133 -30.37152 -28.77379 -27.61027 -26.75960 -25.10853 -24.38284 -23.67940 -23.18678 -21.43848 -20.66677 -20.19106 -18.90739 -18.38260 -18.06023 -17.42257 -17.07714 -16.99125 -16.71566 -16.18775 -16.09027 -15.99117 -15.81397 -15.76314 -15.66031 -15.03550 -14.60696 -14.54789 -14.44730 -14.26494 -14.08746 -13.96568 -13.68811 -13.41027 -13.18516 -12.99014 -12.88262 -12.68187 -12.51713 -12.42033 -12.38628 -12.22007 -12.11012 -12.00847 -11.89155 -11.62594 -11.55132 -11.09727 -10.83296 -10.72782 -10.29895 -9.80907 -9.64865 -9.55692 -8.27894 -5.84466 1.35500 1.39419 1.45923 1.57172 1.75737 2.00652 2.29144 2.73914 2.94173 2.95403 3.06916 3.30643 3.56473 3.72150 3.83992 3.87894 3.91694 3.93986 4.02147 4.15824 4.24096 4.26717 4.28277 4.35272 4.48601 4.50054 4.54257 4.61567 4.65087 4.68734 4.77801 4.80100 4.82036 4.86973 4.90239 4.94882 4.98399 5.00702 5.21229 5.39652 5.46658 5.53038 5.78075 5.82113 5.93269 6.02273 6.11825 6.15129 6.57009 7.00050 7.21778 7.53073 8.06986 8.67916 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.002226 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.813813 B =12577.252705 C =13006.490727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 N -0.445 5.445 4 C -0.342 4.342 5 H 0.072 0.928 6 C 0.005 3.995 7 N -0.869 5.869 8 Si 0.978 3.022 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.278 1.278 12 C 0.445 3.555 13 O -0.631 6.631 14 C -0.103 4.103 15 H 0.124 0.876 16 C -0.135 4.135 17 C 0.523 3.477 18 O -0.570 6.570 19 N -0.607 5.607 20 C 0.125 3.875 21 C 0.046 3.954 22 N -0.530 5.530 23 C 0.007 3.993 24 C 0.064 3.936 25 O -0.407 6.407 26 C 0.066 3.934 27 C 0.014 3.986 28 C 0.123 3.877 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.272 0.728 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.015 0.985 41 H 0.027 0.973 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.029 0.971 49 H 0.108 0.892 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 1.153 18.581 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 N -0.162 5.162 4 C -0.470 4.470 5 H 0.090 0.910 6 C -0.198 4.198 7 N -0.507 5.507 8 Si 0.803 3.197 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.204 1.204 12 C 0.234 3.766 13 O -0.519 6.519 14 C -0.125 4.125 15 H 0.141 0.859 16 C -0.176 4.176 17 C 0.312 3.688 18 O -0.450 6.450 19 N -0.340 5.340 20 C 0.004 3.996 21 C -0.083 4.083 22 N -0.256 5.256 23 C -0.121 4.121 24 C -0.013 4.013 25 O -0.326 6.326 26 C -0.011 4.011 27 C -0.114 4.114 28 C 0.001 3.999 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.132 0.868 47 H 0.115 0.885 48 H 0.048 0.952 49 H 0.126 0.874 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.018 1.503 19.044 19.340 hybrid contribution 1.290 -0.127 -1.522 1.999 sum -1.729 1.376 17.522 17.661 Atomic orbital electron populations 1.22087 0.95406 1.01291 1.01433 1.21470 0.95483 0.82057 1.01061 1.43976 1.54810 1.12258 1.05174 1.19592 1.34339 1.09240 0.83792 0.91006 1.25817 0.95972 0.97034 1.01010 1.70150 1.23364 1.29675 1.27507 0.85116 0.78387 0.78239 0.77998 1.20396 1.19409 1.20414 1.20156 0.84240 0.86522 0.85683 1.90488 1.55325 1.18606 1.87496 1.22021 0.99603 0.98477 0.92364 0.85859 1.22257 0.99123 1.04286 0.91898 1.20964 0.77940 0.78808 0.91127 1.90673 1.48100 1.51407 1.54852 1.48290 1.42501 1.35858 1.07308 1.21618 1.00293 0.96878 0.80831 1.22427 0.96885 0.98485 0.90546 1.62343 1.44950 1.16807 1.01505 1.22999 1.01388 0.93053 0.94618 1.22803 0.91322 0.93720 0.93408 1.87957 1.60152 1.35974 1.48550 1.22767 1.02386 0.87891 0.88037 1.22877 0.92636 0.97590 0.98268 1.21976 1.00517 0.96464 0.80988 0.94364 0.91560 0.91861 0.90571 0.91565 0.91760 0.88793 0.85922 0.89840 0.86788 0.89943 0.96619 0.95492 0.87764 0.86857 0.91154 0.91312 0.86813 0.88543 0.95234 0.87356 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.48 71.98 0.68 -4.60 16 2 C 0.12 4.84 4.93 86.38 0.43 5.26 16 3 N -0.45 -20.94 2.64 -635.54 -1.68 -22.62 16 4 C -0.34 -18.19 9.39 84.04 0.79 -17.40 16 5 H 0.07 4.19 7.35 -2.91 -0.02 4.16 16 6 C 0.00 0.23 4.93 84.93 0.42 0.65 16 7 N -0.87 -41.65 8.42 21.66 0.18 -41.47 16 8 Si 0.98 40.34 29.60 68.60 2.03 42.37 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 12 C 0.45 19.64 6.72 87.66 0.59 20.23 16 13 O -0.63 -32.84 15.23 -3.08 -0.05 -32.89 16 14 C -0.10 -3.26 2.50 -10.55 -0.03 -3.28 16 15 H 0.12 3.41 5.66 -2.39 -0.01 3.40 16 16 C -0.14 -4.09 6.11 30.58 0.19 -3.91 16 17 C 0.52 16.34 8.02 87.90 0.71 17.05 16 18 O -0.57 -21.10 17.59 -3.04 -0.05 -21.15 16 19 N -0.61 -15.97 2.93 -818.36 -2.40 -18.37 16 20 C 0.13 2.65 5.20 86.38 0.45 3.10 16 21 C 0.05 1.02 5.60 86.30 0.48 1.50 16 22 N -0.53 -10.22 4.87 -895.20 -4.36 -14.58 16 23 C 0.01 0.13 4.94 86.31 0.43 0.56 16 24 C 0.06 0.97 7.01 72.01 0.50 1.47 16 25 O -0.41 -7.82 10.83 -148.98 -1.61 -9.43 16 26 C 0.07 1.00 7.01 72.01 0.50 1.51 16 27 C 0.01 0.26 5.63 86.31 0.49 0.75 16 28 C 0.12 3.41 6.84 86.77 0.59 4.01 16 29 H 0.04 1.25 6.88 -2.39 -0.02 1.24 16 30 H 0.07 2.92 6.08 -2.38 -0.01 2.91 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 3.36 6.05 -2.39 -0.01 3.34 16 33 H 0.07 2.16 6.09 -2.38 -0.01 2.14 16 34 H 0.27 12.29 8.31 -92.71 -0.77 11.52 16 35 H 0.09 3.15 7.89 -2.39 -0.02 3.14 16 36 H 0.12 3.24 7.61 -2.39 -0.02 3.22 16 37 H 0.08 1.80 6.06 -2.39 -0.01 1.79 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.02 0.43 8.08 -2.38 -0.02 0.41 16 41 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 1.54 6.05 -2.39 -0.01 1.52 16 43 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.07 2.43 6.85 -2.39 -0.02 2.41 16 Total: -1.00 -66.79 386.27 0.22 -66.57 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.94 Total: 24.69 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 7.22 Total: 26.88 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -8.26 Total: -97.03 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -1.71 Total: -63.47 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -66.79 0.22 -66.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369018589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.809 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds