Wall clock time and date at job start Tue Mar 31 2020 23:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46507 * 109.46997 * 2 1
4 4 C 1.45649 * 117.70438 * 269.97714 * 3 2 1
5 5 C 1.52984 * 110.77029 * 158.12206 * 4 3 2
6 6 N 1.47266 * 108.18693 * 46.73003 * 5 4 3
7 7 C 1.34781 * 121.35103 * 118.51935 * 6 5 4
8 8 O 1.21350 * 119.99615 * 186.77463 * 7 6 5
9 9 C 1.49441 * 120.00225 * 6.76751 * 7 6 5
10 10 O 1.21347 * 120.00173 * 6.52121 * 9 7 6
11 11 N 1.34782 * 119.99824 * 186.52006 * 9 7 6
12 12 C 1.46505 * 119.99749 * 179.97438 * 11 9 7
13 13 C 1.53004 * 109.46882 * 179.97438 * 12 11 9
14 14 C 1.53002 * 109.47054 * 300.00157 * 13 12 11
15 15 C 1.52998 * 109.46813 * 60.00310 * 13 12 11
16 16 C 1.50697 * 109.47066 * 180.02562 * 13 12 11
17 17 H 1.08005 * 119.99962 * 359.97438 * 16 13 12
18 18 C 1.37873 * 119.99984 * 180.02562 * 16 13 12
19 19 N 1.31515 * 120.00108 * 0.02562 * 18 16 13
20 20 Si 1.86806 * 119.99809 * 179.97438 * 18 16 13
21 21 H 1.48504 * 109.46771 * 90.00485 * 20 18 16
22 22 H 1.48496 * 109.46897 * 210.00004 * 20 18 16
23 23 H 1.48496 * 109.47574 * 330.00521 * 20 18 16
24 24 C 1.47050 * 117.29433 * 298.49210 * 6 5 4
25 25 H 1.09000 * 109.66350 * 282.85723 * 24 6 5
26 26 C 1.52996 * 109.56681 * 162.56232 * 24 6 5
27 27 C 1.33371 * 117.70485 * 90.00501 * 3 2 1
28 28 O 1.21289 * 118.49394 * 4.31410 * 27 3 2
29 29 H 1.09000 * 109.46669 * 299.99582 * 1 2 3
30 30 H 1.09000 * 109.46980 * 60.00064 * 1 2 3
31 31 H 1.08998 * 109.46924 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47139 * 240.00211 * 2 1 3
33 33 H 1.08996 * 109.47427 * 120.00081 * 2 1 3
34 34 H 1.08999 * 109.21957 * 278.46058 * 4 3 2
35 35 H 1.09003 * 109.21529 * 37.79053 * 4 3 2
36 36 H 1.09003 * 109.71844 * 166.39998 * 5 4 3
37 37 H 1.08996 * 109.72149 * 287.05487 * 5 4 3
38 38 H 0.96997 * 120.00094 * 0.02562 * 11 9 7
39 39 H 1.08995 * 109.47387 * 299.99878 * 12 11 9
40 40 H 1.08999 * 109.46571 * 60.00646 * 12 11 9
41 41 H 1.09001 * 109.47157 * 60.00314 * 14 13 12
42 42 H 1.09003 * 109.46385 * 179.97438 * 14 13 12
43 43 H 1.08990 * 109.47375 * 299.99923 * 14 13 12
44 44 H 1.08999 * 109.46946 * 59.99968 * 15 13 12
45 45 H 1.09001 * 109.46874 * 180.02562 * 15 13 12
46 46 H 1.09001 * 109.47391 * 299.99682 * 15 13 12
47 47 H 0.97002 * 119.99820 * 179.97438 * 19 18 16
48 48 H 1.09003 * 109.46982 * 309.51828 * 26 24 6
49 49 H 1.08998 * 109.47459 * 69.51964 * 26 24 6
50 50 H 1.09007 * 109.46960 * 189.52107 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2445 2.0195 -1.2895
5 6 2.2177 3.5430 -1.1529
6 7 3.0472 3.9153 0.0055
7 6 4.1403 4.6912 -0.1351
8 8 4.8746 4.8823 0.8119
9 6 4.4480 5.3161 -1.4573
10 8 3.6552 5.2238 -2.3713
11 7 5.6062 5.9823 -1.6346
12 6 5.9081 6.5944 -2.9309
13 6 7.2726 7.2834 -2.8641
14 6 7.2451 8.3657 -1.7830
15 6 8.3492 6.2506 -2.5247
16 6 7.5829 7.9136 -4.1974
17 1 6.8777 7.8306 -5.0111
18 6 8.7677 8.5951 -4.3787
19 7 9.6272 8.6948 -3.3883
20 14 9.1526 9.3757 -6.0316
21 1 8.6363 10.7679 -6.0537
22 1 10.6225 9.3894 -6.2422
23 1 8.5049 8.5904 -7.1128
24 6 2.6342 3.4067 1.3220
25 1 1.7921 3.9907 1.6931
26 6 3.8037 3.5136 2.3026
27 6 2.2251 1.9659 1.1808
28 8 2.0768 1.3055 2.1873
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 3.2154 1.7110 -1.6772
35 1 1.4657 1.7079 -1.9855
36 1 2.6211 4.0004 -2.0564
37 1 1.1933 3.8802 -0.9952
38 1 6.2401 6.0558 -0.9041
39 1 5.9273 5.8235 -3.7011
40 1 5.1413 7.3305 -3.1724
41 1 7.0205 7.9102 -0.8185
42 1 8.2174 8.8561 -1.7352
43 1 6.4782 9.1014 -2.0248
44 1 8.3688 5.4796 -3.2949
45 1 9.3213 6.7415 -2.4767
46 1 8.1246 5.7951 -1.5602
47 1 10.4608 9.1740 -3.5160
48 1 4.6933 3.0681 1.8571
49 1 3.9959 4.5630 2.5259
50 1 3.5553 2.9858 3.2234
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000422478942.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:09:26
Heat of formation + Delta-G solvation = -71.216849 kcal
Electronic energy + Delta-G solvation = -31010.762963 eV
Core-core repulsion = 26846.598077 eV
Total energy + Delta-G solvation = -4164.164885 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.51508 -40.16331 -38.58830 -37.08391 -36.50266 -35.73195 -33.46722 -32.01064
-31.29390 -30.98240 -28.80561 -26.48597 -25.78829 -25.75671 -25.25693 -23.64874
-23.53977 -22.43845 -20.34966 -19.26674 -18.76798 -18.08686 -17.35040 -16.94875
-16.15677 -16.02805 -15.93754 -15.64351 -15.49097 -14.99657 -14.76739 -14.69253
-14.10875 -13.95161 -13.68073 -13.58434 -13.35702 -12.99247 -12.90983 -12.69387
-12.56881 -12.31471 -12.27854 -12.21082 -11.98324 -11.75981 -11.47080 -11.36694
-11.26559 -10.93959 -10.74705 -10.61030 -10.46470 -10.36318 -10.23963 -9.72497
-9.50083 -9.16154 -9.02788 -8.90334 -8.81798 -8.73961 -8.43127 -6.07862
-4.19049 1.44974 2.12421 2.31249 2.60738 3.24395 3.25104 3.32009
3.34483 3.55066 4.05991 4.33227 4.42184 4.54954 4.68793 4.73004
4.81326 4.86997 4.93654 4.99385 5.06293 5.18986 5.30554 5.43041
5.58272 5.61906 5.71662 5.79772 5.81737 5.87734 6.00805 6.10215
6.13692 6.29420 6.38726 6.57949 6.75428 6.77956 6.81908 6.86832
6.93258 7.07835 7.25973 7.43613 7.48544 7.63388 7.76450 7.84126
7.93992 8.04870 8.19261 8.32227 8.81116 9.47299 10.93505
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.024836 B = 0.002414 C = 0.002288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.124067 B =11598.136231 C =12232.615513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.098 3.902
3 N -0.602 5.602
4 C 0.098 3.902
5 C 0.045 3.955
6 N -0.591 5.591
7 C 0.515 3.485
8 O -0.505 6.505
9 C 0.499 3.501
10 O -0.527 6.527
11 N -0.673 5.673
12 C 0.126 3.874
13 C 0.056 3.944
14 C -0.134 4.134
15 C -0.134 4.134
16 C -0.508 4.508
17 H 0.058 0.942
18 C 0.067 3.933
19 N -0.884 5.884
20 Si 0.894 3.106
21 H -0.281 1.281
22 H -0.287 1.287
23 H -0.274 1.274
24 C 0.132 3.868
25 H 0.107 0.893
26 C -0.134 4.134
27 C 0.514 3.486
28 O -0.541 6.541
29 H 0.058 0.942
30 H 0.056 0.944
31 H 0.066 0.934
32 H 0.077 0.923
33 H 0.088 0.912
34 H 0.071 0.929
35 H 0.090 0.910
36 H 0.174 0.826
37 H 0.077 0.923
38 H 0.412 0.588
39 H 0.064 0.936
40 H 0.064 0.936
41 H 0.008 0.992
42 H 0.087 0.913
43 H 0.028 0.972
44 H 0.028 0.972
45 H 0.087 0.913
46 H 0.008 0.992
47 H 0.261 0.739
48 H 0.068 0.932
49 H 0.089 0.911
50 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.226 -13.135 5.736 20.911
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.024 4.024
3 N -0.335 5.335
4 C -0.025 4.025
5 C -0.077 4.077
6 N -0.328 5.328
7 C 0.298 3.702
8 O -0.380 6.380
9 C 0.280 3.720
10 O -0.408 6.408
11 N -0.323 5.323
12 C 0.005 3.995
13 C 0.055 3.945
14 C -0.192 4.192
15 C -0.192 4.192
16 C -0.547 4.547
17 H 0.077 0.923
18 C -0.135 4.135
19 N -0.522 5.522
20 Si 0.722 3.278
21 H -0.207 1.207
22 H -0.213 1.213
23 H -0.199 1.199
24 C 0.026 3.974
25 H 0.124 0.876
26 C -0.191 4.191
27 C 0.301 3.699
28 O -0.417 6.417
29 H 0.077 0.923
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.096 0.904
33 H 0.106 0.894
34 H 0.089 0.911
35 H 0.109 0.891
36 H 0.190 0.810
37 H 0.096 0.904
38 H 0.250 0.750
39 H 0.082 0.918
40 H 0.083 0.917
41 H 0.027 0.973
42 H 0.106 0.894
43 H 0.047 0.953
44 H 0.047 0.953
45 H 0.106 0.894
46 H 0.027 0.973
47 H 0.071 0.929
48 H 0.087 0.913
49 H 0.108 0.892
50 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -15.199 -13.308 6.159 21.120
hybrid contribution 0.298 0.398 -0.659 0.825
sum -14.901 -12.910 5.500 20.469
Atomic orbital electron populations
1.22091 0.95591 1.02352 1.02300 1.21550 0.94637 0.82610 1.03601
1.47400 1.65233 1.14776 1.06080 1.21908 1.02580 0.93502 0.84552
1.23539 0.96877 0.93685 0.93553 1.48058 1.26763 1.49619 1.08383
1.20360 0.80843 0.79353 0.89612 1.90810 1.47446 1.59563 1.40154
1.19982 0.83415 0.80884 0.87748 1.90299 1.47079 1.60110 1.43279
1.46280 1.18054 1.50505 1.17441 1.22011 1.00035 0.96385 0.81088
1.18385 0.87832 0.92149 0.96095 1.21866 1.03297 0.99131 0.94907
1.21865 1.03688 0.97739 0.95894 1.20926 1.03677 1.33939 0.96143
0.92327 1.24884 0.96026 0.95858 0.96711 1.69803 1.09543 1.41983
1.30850 0.86554 0.77424 0.79685 0.84097 1.20687 1.21251 1.19899
1.21543 1.00660 0.90504 0.84645 0.87567 1.22118 0.95345 1.04679
0.96995 1.20299 0.76903 0.89550 0.83167 1.90719 1.52235 1.63155
1.35638 0.92305 0.92481 0.91457 0.90410 0.89384 0.91072 0.89140
0.81045 0.90417 0.74974 0.91750 0.91750 0.97262 0.89415 0.95296
0.95306 0.89387 0.97322 0.92883 0.91331 0.89184 0.91617
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.14 10.23 37.16 0.38 -0.76 16
2 C 0.10 0.80 5.92 -4.04 -0.02 0.78 16
3 N -0.60 -5.88 2.80 -174.88 -0.49 -6.37 16
4 C 0.10 0.79 6.50 -4.51 -0.03 0.76 16
5 C 0.04 0.43 6.29 -3.63 -0.02 0.40 16
6 N -0.59 -6.97 2.98 -167.06 -0.50 -7.47 16
7 C 0.52 7.27 7.63 -11.59 -0.09 7.18 16
8 O -0.51 -7.87 12.34 5.50 0.07 -7.80 16
9 C 0.50 7.71 7.78 -11.59 -0.09 7.62 16
10 O -0.53 -8.38 13.15 5.50 0.07 -8.31 16
11 N -0.67 -11.29 4.95 -60.73 -0.30 -11.59 16
12 C 0.13 2.43 4.50 -4.04 -0.02 2.41 16
13 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16
14 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16
15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16
16 C -0.51 -12.65 8.01 -34.44 -0.28 -12.92 16
17 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16
18 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16
19 N -0.88 -22.95 9.35 55.43 0.52 -22.44 16
20 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16
21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
24 C 0.13 1.52 3.68 -68.91 -0.25 1.26 16
25 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16
26 C -0.13 -1.65 7.57 37.16 0.28 -1.37 16
27 C 0.51 6.20 7.08 -11.74 -0.08 6.12 16
28 O -0.54 -7.93 15.40 5.55 0.09 -7.84 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16
33 H 0.09 0.86 7.10 -51.93 -0.37 0.49 16
34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16
36 H 0.17 1.91 4.02 -55.80 -0.22 1.69 16
37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.41 6.92 5.65 -40.82 -0.23 6.68 16
39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
41 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16
42 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16
43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16
46 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16
47 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16
48 H 0.07 0.95 7.14 -51.93 -0.37 0.58 16
49 H 0.09 1.15 6.59 -51.93 -0.34 0.81 16
50 H 0.07 0.79 7.59 -51.93 -0.39 0.39 16
LS Contribution 386.33 15.07 5.82 5.82
Total: -1.00 -27.85 386.33 -7.41 -35.26
By element:
Atomic # 1 Polarization: 14.61 SS G_CDS: -7.88 Total: 6.73 kcal
Atomic # 6 Polarization: 8.78 SS G_CDS: 0.21 Total: 8.98 kcal
Atomic # 7 Polarization: -47.09 SS G_CDS: -0.77 Total: -47.86 kcal
Atomic # 8 Polarization: -24.18 SS G_CDS: 0.23 Total: -23.95 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -27.85 -7.41 -35.26 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000422478942.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.953 kcal
(2) G-P(sol) polarization free energy of solvation -27.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds