Wall clock time and date at job start Wed Apr 1 2020 00:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46497 * 119.99974 * 269.99961 * 3 2 1 5 5 C 1.50696 * 109.47477 * 269.99812 * 4 3 2 6 6 H 1.07999 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00536 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00314 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47371 * 119.99985 * 9 7 5 12 12 H 1.48501 * 109.47269 * 240.00126 * 9 7 5 13 13 C 1.34780 * 120.00026 * 90.00358 * 3 2 1 14 14 O 1.21283 * 119.99925 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99669 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46965 * 180.02562 * 15 13 3 17 17 C 1.48530 * 110.99918 * 52.60015 * 16 15 13 18 18 C 1.54940 * 103.22772 * 159.72252 * 17 16 15 19 19 C 1.54604 * 102.91923 * 322.58912 * 18 17 16 20 20 H 1.09001 * 110.30354 * 263.04015 * 19 18 17 21 21 C 1.52997 * 110.39348 * 140.91527 * 19 18 17 22 22 N 1.46496 * 109.47128 * 69.23285 * 21 19 18 23 23 C 1.47092 * 125.56000 * 90.00151 * 22 21 19 24 24 C 1.54093 * 103.77690 * 179.97438 * 23 22 21 25 25 O 1.45693 * 104.00986 * 359.97438 * 24 23 22 26 26 C 1.33777 * 109.47768 * 359.75697 * 25 24 23 27 27 O 1.21508 * 123.07173 * 180.23854 * 26 25 24 28 28 C 1.47899 * 110.99831 * 170.00161 * 16 15 13 29 29 H 1.09001 * 109.47087 * 59.99407 * 1 2 3 30 30 H 1.08995 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46987 * 300.00026 * 1 2 3 32 32 H 1.09001 * 109.46987 * 239.99974 * 2 1 3 33 33 H 1.09001 * 109.47087 * 120.00593 * 2 1 3 34 34 H 1.08997 * 109.47423 * 30.00546 * 4 3 2 35 35 H 1.09010 * 109.46962 * 150.00251 * 4 3 2 36 36 H 0.97004 * 119.99770 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.47133 * 60.00295 * 15 13 3 38 38 H 1.08996 * 109.47320 * 300.00036 * 15 13 3 39 39 H 1.09002 * 110.67228 * 278.15582 * 17 16 15 40 40 H 1.09004 * 110.67104 * 41.28985 * 17 16 15 41 41 H 1.09002 * 110.72702 * 204.23263 * 18 17 16 42 42 H 1.08997 * 110.87867 * 81.01343 * 18 17 16 43 43 H 1.08993 * 109.47357 * 189.23645 * 21 19 18 44 44 H 1.09004 * 109.46764 * 309.23423 * 21 19 18 45 45 H 1.09004 * 110.56505 * 298.54913 * 23 22 21 46 46 H 1.09000 * 110.56991 * 61.40634 * 23 22 21 47 47 H 1.08999 * 110.52427 * 118.63263 * 24 23 22 48 48 H 1.09001 * 110.51880 * 241.36496 * 24 23 22 49 49 H 1.08997 * 109.91760 * 333.50746 * 28 16 15 50 50 H 1.08995 * 109.91931 * 94.80655 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4176 10 1 6.6006 1.2395 -2.4175 11 1 5.9202 1.4163 -4.7381 12 1 6.6210 3.3965 -3.5263 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2064 3.5889 17 6 1.5994 3.5032 3.4458 18 6 1.6127 4.0754 4.8856 19 6 1.4092 2.8166 5.7598 20 1 0.3591 2.7111 6.0323 21 6 2.2780 2.8943 7.0167 22 7 1.7663 3.9451 7.8999 23 6 0.7584 3.7600 8.9551 24 6 0.5979 5.1679 9.5604 25 8 1.5229 5.9900 8.7913 26 6 2.1451 5.2304 7.8827 27 8 2.9747 5.6670 7.1097 28 6 1.8530 1.6367 4.8753 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 3.6750 3.5155 -4.4444 37 1 2.6213 0.4186 2.5302 38 1 0.9434 1.0125 2.5299 39 1 2.1369 4.1630 2.7647 40 1 0.5764 3.3462 3.1037 41 1 0.7937 4.7805 5.0281 42 1 2.5696 4.5481 5.1069 43 1 2.2506 1.9370 7.5371 44 1 3.3053 3.1251 6.7346 45 1 -0.1841 3.4169 8.5284 46 1 1.1169 3.0582 9.7082 47 1 -0.4248 5.5235 9.4350 48 1 0.8758 5.1646 10.6144 49 1 1.0130 0.9630 4.7059 50 1 2.6717 1.1004 5.3551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496365382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:33 Heat of formation + Delta-G solvation = -83.930771 kcal Electronic energy + Delta-G solvation = -30373.830380 eV Core-core repulsion = 26209.114178 eV Total energy + Delta-G solvation = -4164.716202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83706 -39.73943 -38.31253 -37.32767 -35.92910 -35.18876 -32.94922 -32.47223 -30.33014 -30.08848 -29.26561 -27.97437 -26.46970 -25.08651 -24.05540 -23.02079 -22.45969 -21.54687 -21.02657 -20.19305 -18.35838 -17.74139 -17.58821 -17.13663 -16.48877 -16.28315 -16.02006 -15.40717 -15.14980 -15.04155 -14.66366 -14.43187 -14.33172 -14.16309 -13.89539 -13.58466 -13.43816 -13.31511 -12.96232 -12.79479 -12.69495 -12.26532 -12.12878 -11.91374 -11.87022 -11.59807 -11.30318 -11.19492 -11.16839 -11.13345 -10.95539 -10.86388 -10.75099 -10.63246 -10.49915 -10.48513 -10.06414 -9.55881 -9.22322 -8.73272 -8.39820 -8.20207 -7.60606 -6.00453 -4.04619 2.12051 2.51909 3.12928 3.33324 3.40658 3.43318 3.48956 3.70754 3.76476 4.16561 4.24679 4.26226 4.48638 4.56951 4.57941 4.70760 4.76219 4.91176 4.98301 5.10117 5.18078 5.28031 5.34350 5.35019 5.37191 5.40573 5.53158 5.56086 5.62086 5.67197 5.76686 5.79530 5.89597 5.96241 6.01774 6.12900 6.22236 6.40691 6.46210 6.56591 6.99248 7.05601 7.06692 7.19234 7.48718 7.60712 7.80977 7.96694 8.28004 8.46624 8.95741 9.16699 9.60591 11.07690 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002320 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.044175 B =12067.526629 C =12956.811525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.524 6.524 15 C 0.028 3.972 16 N -0.497 5.497 17 C 0.036 3.964 18 C -0.120 4.120 19 C -0.118 4.118 20 H 0.074 0.926 21 C 0.157 3.843 22 N -0.630 5.630 23 C 0.065 3.935 24 C 0.041 3.959 25 O -0.331 6.331 26 C 0.640 3.360 27 O -0.509 6.509 28 C 0.043 3.957 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.033 0.967 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.045 0.955 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -6.359 27.291 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.401 6.401 15 C -0.103 4.103 16 N -0.222 5.222 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.138 4.138 20 H 0.092 0.908 21 C 0.036 3.964 22 N -0.378 5.378 23 C -0.059 4.059 24 C -0.034 4.034 25 O -0.241 6.241 26 C 0.393 3.607 27 O -0.392 6.392 28 C -0.085 4.085 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.064 0.936 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.235 -5.100 26.713 29.057 hybrid contribution -0.259 -0.680 -0.349 0.807 sum -10.494 -5.780 26.364 28.958 Atomic orbital electron populations 1.22221 0.96970 1.01311 1.02173 1.21402 0.93335 0.84390 1.02652 1.48251 1.63988 1.13193 1.07693 1.19251 0.96258 0.93594 0.78058 1.21474 0.96919 1.31685 1.06103 0.92408 1.24939 0.97845 0.94961 0.96448 1.69945 1.35596 1.33627 1.14337 0.86445 0.84704 0.78082 0.78207 1.19779 1.21058 1.20867 1.20108 0.78862 0.87074 0.84847 1.90612 1.44968 1.17902 1.86608 1.22319 1.00079 0.96937 0.90978 1.64648 1.54312 1.03183 1.00027 1.23506 0.96491 0.91882 0.97230 1.22681 1.03205 0.95724 0.94181 1.22470 0.99443 0.96733 0.95149 0.90776 1.21504 0.98548 0.88072 0.88251 1.48082 1.43510 1.09130 1.37102 1.22786 0.94023 0.97906 0.91171 1.24263 0.94522 0.88003 0.96645 1.87307 1.54021 1.35585 1.47210 1.18532 0.81030 0.80661 0.80465 1.91094 1.33265 1.75498 1.39324 1.22874 0.99002 0.95695 0.90977 0.92014 0.92205 0.93369 0.89906 0.91856 0.95134 0.93956 0.92832 0.88429 0.92645 0.86487 0.94901 0.92122 0.89183 0.89765 0.88584 0.89148 0.89090 0.87709 0.87738 0.93646 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.25 6.53 5.16 -5.20 -0.03 6.50 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.51 10.62 7.38 -10.98 -0.08 10.54 16 14 O -0.52 -13.29 13.10 5.56 0.07 -13.22 16 15 C 0.03 0.44 4.07 -4.97 -0.02 0.42 16 16 N -0.50 -7.62 5.26 -231.89 -1.22 -8.84 16 17 C 0.04 0.58 5.30 -1.90 -0.01 0.57 16 18 C -0.12 -1.63 5.85 -24.86 -0.15 -1.78 16 19 C -0.12 -1.14 3.22 -89.26 -0.29 -1.43 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 21 C 0.16 1.30 5.14 -4.05 -0.02 1.28 16 22 N -0.63 -5.28 2.90 -178.85 -0.52 -5.80 16 23 C 0.06 0.24 7.70 -3.15 -0.02 0.22 16 24 C 0.04 0.16 8.23 37.73 0.31 0.47 16 25 O -0.33 -3.40 11.09 -37.85 -0.42 -3.82 16 26 C 0.64 7.84 8.39 53.71 0.45 8.29 16 27 O -0.51 -8.57 15.81 -19.11 -0.30 -8.87 16 28 C 0.04 0.46 6.36 -2.75 -0.02 0.44 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.26 7.42 -51.92 -0.39 0.88 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 38 H 0.06 0.73 6.85 -51.93 -0.36 0.38 16 39 H 0.12 2.38 5.97 -51.93 -0.31 2.07 16 40 H 0.03 0.52 8.02 -51.93 -0.42 0.10 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.45 6.23 -51.93 -0.32 1.13 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 1.01 7.78 -51.93 -0.40 0.61 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.05 0.42 7.57 -51.93 -0.39 0.02 16 50 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -37.89 396.70 -9.33 -47.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.27 Total: -2.17 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 0.06 Total: 11.60 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.43 Total: -54.06 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.65 Total: -25.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.89 -9.33 -47.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496365382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.714 kcal (2) G-P(sol) polarization free energy of solvation -37.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds