Wall clock time and date at job start Wed Apr 1 2020 00:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47244 * 2 1 4 4 C 1.34776 * 120.00142 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00196 * 354.77547 * 4 3 2 6 6 C 1.50702 * 120.00013 * 174.76701 * 4 3 2 7 7 C 1.52997 * 112.85026 * 65.85578 * 6 4 3 8 8 N 1.46502 * 109.47110 * 56.71699 * 7 6 4 9 9 C 1.34776 * 120.00468 * 175.30137 * 8 7 6 10 10 O 1.21587 * 119.99621 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00580 * 179.97438 * 9 8 7 12 12 C 1.47428 * 125.64652 * 0.02562 * 11 9 8 13 13 C 1.54910 * 104.92839 * 155.79618 * 12 11 9 14 14 C 1.55440 * 101.45201 * 37.00082 * 13 12 11 15 15 O 1.42904 * 110.70829 * 82.89446 * 14 13 12 16 16 C 1.50705 * 110.85899 * 206.07373 * 14 13 12 17 17 H 1.07999 * 120.00152 * 355.08964 * 16 14 13 18 18 C 1.37881 * 120.00092 * 175.09155 * 16 14 13 19 19 N 1.31521 * 119.99519 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00223 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46952 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47300 * 119.99705 * 20 18 16 23 23 H 1.48502 * 109.46977 * 239.99834 * 20 18 16 24 24 C 1.47023 * 125.65258 * 179.97438 * 11 9 8 25 25 C 1.53785 * 113.61584 * 197.04840 * 6 4 3 26 26 C 1.53955 * 87.01713 * 89.23302 * 25 6 4 27 27 C 1.53774 * 87.11290 * 25.36125 * 26 25 6 28 28 H 1.09002 * 109.47207 * 299.99918 * 1 2 3 29 29 H 1.09001 * 109.47047 * 60.00233 * 1 2 3 30 30 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47207 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47316 * 120.00209 * 2 1 3 33 33 H 0.97003 * 120.00021 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47042 * 296.72385 * 7 6 4 35 35 H 1.08997 * 109.47626 * 176.71919 * 7 6 4 36 36 H 0.97005 * 119.99914 * 355.29720 * 8 7 6 37 37 H 1.09000 * 110.36115 * 274.68527 * 12 11 9 38 38 H 1.08998 * 110.36755 * 36.89911 * 12 11 9 39 39 H 1.09000 * 111.00285 * 155.14143 * 13 12 11 40 40 H 1.08999 * 111.00470 * 278.98707 * 13 12 11 41 41 H 0.96698 * 113.99863 * 184.99866 * 15 14 13 42 42 H 0.97005 * 119.99383 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.88056 * 300.50016 * 24 11 9 44 44 H 1.09003 * 109.88292 * 61.50238 * 24 11 9 45 45 H 1.09000 * 113.61409 * 203.75253 * 25 6 4 46 46 H 1.09003 * 113.61321 * 334.65764 * 25 6 4 47 47 H 1.09005 * 113.53867 * 270.81234 * 26 25 6 48 48 H 1.09002 * 113.74243 * 139.94480 * 26 25 6 49 49 H 1.09006 * 113.61872 * 220.08764 * 27 26 25 50 50 H 1.09009 * 113.61318 * 89.18722 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1307 0.7100 0.0966 6 6 3.8467 3.0429 -0.1185 7 6 3.4797 3.9076 1.0892 8 7 3.9961 3.2849 2.3106 9 6 3.8746 3.9189 3.4936 10 8 3.3367 5.0081 3.5471 11 7 4.3491 3.3459 4.6173 12 6 5.0206 2.0357 4.6961 13 6 5.8904 2.1094 5.9758 14 6 4.9733 2.9299 6.9255 15 8 4.0098 2.0824 7.5545 16 6 5.7897 3.6637 7.9581 17 1 6.8574 3.5102 8.0112 18 6 5.1735 4.5311 8.8350 19 7 3.8734 4.7185 8.7700 20 14 6.1855 5.4412 10.1145 21 1 7.6140 5.0587 9.9793 22 1 6.0429 6.9049 9.9087 23 1 5.7039 5.0830 11.4728 24 6 4.2840 3.9241 5.9675 25 6 5.3291 3.1382 -0.5165 26 6 4.8534 3.1300 -1.9807 27 6 3.5204 3.7013 -1.4694 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3880 2.1185 -0.0004 34 1 2.3954 3.9957 1.1568 35 1 3.9183 4.8987 0.9733 36 1 4.4255 2.4161 2.2679 37 1 4.2842 1.2368 4.7834 38 1 5.6484 1.8779 3.8192 39 1 6.0806 1.1138 6.3767 40 1 6.8249 2.6363 5.7832 41 1 3.3650 2.5556 8.0979 42 1 3.4399 5.3290 9.3867 43 1 4.8065 4.8806 5.9867 44 1 3.2436 4.0644 6.2610 45 1 5.8026 4.0730 -0.2165 46 1 5.9125 2.2596 -0.2411 47 1 4.7658 2.1295 -2.4044 48 1 5.4040 3.8157 -2.6249 49 1 2.6457 3.2767 -1.9621 50 1 3.4985 4.7904 -1.4304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:25 Heat of formation + Delta-G solvation = -97.716699 kcal Electronic energy + Delta-G solvation = -31023.379011 eV Core-core repulsion = 26858.065006 eV Total energy + Delta-G solvation = -4165.314005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12834 -39.49111 -37.96820 -37.27930 -35.51479 -34.24398 -34.07283 -32.19898 -31.01693 -30.10565 -28.47234 -27.57148 -25.96332 -25.15732 -24.19408 -22.95991 -22.40062 -21.58187 -19.70783 -19.58079 -19.22818 -17.74690 -17.04619 -16.78063 -16.44278 -15.96744 -15.69508 -15.36758 -15.15997 -14.90676 -14.82028 -14.30706 -13.95078 -13.94199 -13.78753 -13.18243 -12.98139 -12.88434 -12.83823 -12.69386 -12.59177 -12.17174 -12.11169 -12.01356 -11.79210 -11.63153 -11.38912 -11.23456 -11.04309 -10.79439 -10.71942 -10.62214 -10.60717 -10.44542 -10.14417 -9.96665 -9.60977 -9.33884 -9.28758 -8.85551 -8.65908 -8.28705 -7.73171 -6.25794 -4.33992 2.36362 2.84879 3.10067 3.22686 3.30954 3.34638 3.74006 4.08108 4.22080 4.29437 4.34454 4.48258 4.55848 4.57858 4.74455 4.77915 5.02103 5.02173 5.08646 5.35726 5.42656 5.43138 5.44591 5.47004 5.59198 5.60215 5.64543 5.72469 5.75639 5.82139 5.84411 5.86784 6.06533 6.07339 6.13023 6.16357 6.53968 6.71365 6.75645 6.92071 7.01024 7.21068 7.28113 7.34660 7.64921 7.75897 7.96284 8.06858 8.53844 8.70097 9.13011 9.32311 9.40880 10.82061 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002775 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.537284 B =10088.541197 C =10689.865567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.727 5.727 4 C 0.541 3.459 5 O -0.533 6.533 6 C -0.126 4.126 7 C 0.163 3.837 8 N -0.752 5.752 9 C 0.716 3.284 10 O -0.598 6.598 11 N -0.629 5.629 12 C 0.103 3.897 13 C -0.115 4.115 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.893 5.893 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.124 3.876 25 C -0.115 4.115 26 C -0.141 4.141 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.396 0.604 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.382 0.618 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 -5.643 -21.402 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.379 5.379 4 C 0.327 3.673 5 O -0.409 6.409 6 C -0.130 4.130 7 C 0.038 3.962 8 N -0.410 5.410 9 C 0.418 3.582 10 O -0.477 6.477 11 N -0.366 5.366 12 C -0.020 4.020 13 C -0.153 4.153 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.574 4.574 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.002 3.998 25 C -0.153 4.153 26 C -0.179 4.179 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.830 -5.847 -21.577 22.681 hybrid contribution -0.116 0.924 1.004 1.370 sum -3.946 -4.923 -20.573 21.519 Atomic orbital electron populations 1.22009 0.94325 1.03320 1.02681 1.21315 0.94386 0.82791 1.02446 1.45979 1.07093 1.09088 1.75764 1.19854 0.82213 0.89920 0.75358 1.90709 1.55425 1.45974 1.48794 1.22369 1.00426 0.93169 0.97010 1.20975 0.98913 0.95532 0.80765 1.45113 1.66099 1.23887 1.05897 1.15477 0.79577 0.83599 0.79534 1.90881 1.50385 1.20973 1.85503 1.47956 1.60354 1.20720 1.07527 1.22226 0.95368 0.85696 0.98710 1.22764 0.97730 1.01228 0.93607 1.19576 0.85456 0.85549 0.88702 1.86108 1.46292 1.39021 1.67930 1.21531 0.94774 1.25021 1.16065 0.91506 1.25079 0.95191 0.95812 0.97255 1.69718 1.08681 1.37013 1.37822 0.86350 0.80338 0.79342 0.80883 1.19602 1.20788 1.20775 1.22848 1.01522 0.98108 0.77325 1.22899 0.93249 1.03766 0.95351 1.22877 0.96570 1.01493 0.96920 1.22919 0.98665 1.01212 0.92654 0.91704 0.92019 0.90718 0.91593 0.91248 0.76389 0.91882 0.90299 0.76978 0.92145 0.92630 0.90594 0.90496 0.76812 0.92102 0.91783 0.91917 0.88875 0.89696 0.90133 0.90740 0.90855 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.03 37.15 0.37 -0.59 16 2 C 0.11 0.94 6.40 -4.04 -0.03 0.92 16 3 N -0.73 -6.50 5.55 -60.30 -0.33 -6.83 16 4 C 0.54 6.10 5.65 -10.98 -0.06 6.04 16 5 O -0.53 -7.78 15.95 5.55 0.09 -7.69 16 6 C -0.13 -1.22 0.83 -154.85 -0.13 -1.35 16 7 C 0.16 1.99 5.00 -4.04 -0.02 1.97 16 8 N -0.75 -11.69 5.33 -65.23 -0.35 -12.04 16 9 C 0.72 14.72 8.49 -86.92 -0.74 13.98 16 10 O -0.60 -14.35 16.67 5.29 0.09 -14.27 16 11 N -0.63 -13.40 3.33 -176.24 -0.59 -13.99 16 12 C 0.10 1.92 6.56 -2.53 -0.02 1.90 16 13 C -0.12 -2.36 6.26 -24.43 -0.15 -2.51 16 14 C 0.25 6.07 0.85 -89.78 -0.08 5.99 16 15 O -0.58 -14.85 13.08 -35.23 -0.46 -15.32 16 16 C -0.54 -14.15 8.13 -34.44 -0.28 -14.43 16 17 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 18 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 19 N -0.89 -24.01 10.96 55.43 0.61 -23.41 16 20 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.12 3.07 5.24 -3.07 -0.02 3.06 16 25 C -0.11 -1.11 7.11 -25.82 -0.18 -1.29 16 26 C -0.14 -1.09 7.81 -25.83 -0.20 -1.29 16 27 C -0.12 -0.82 7.22 -25.92 -0.19 -1.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.84 8.48 -40.82 -0.35 2.50 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.40 5.93 6.41 -40.82 -0.26 5.67 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.88 7.29 -51.93 -0.38 0.50 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 41 H 0.38 9.90 7.45 45.56 0.34 10.24 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.73 7.82 -51.92 -0.41 1.33 16 44 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 45 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 46 H 0.08 0.96 7.34 -51.93 -0.38 0.58 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 50 H 0.10 0.59 8.10 -51.92 -0.42 0.17 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -32.20 403.23 -9.42 -41.62 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -7.72 Total: 17.08 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -1.81 Total: 13.13 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.66 Total: -56.26 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.28 Total: -37.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.20 -9.42 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.101 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds