Wall clock time and date at job start Wed Apr 1 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47244 * 2 1 4 4 C 1.34776 * 120.00142 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00196 * 354.77547 * 4 3 2 6 6 C 1.50702 * 120.00013 * 174.76701 * 4 3 2 7 7 C 1.52997 * 112.85026 * 65.85578 * 6 4 3 8 8 N 1.46502 * 109.47110 * 56.71699 * 7 6 4 9 9 C 1.34776 * 120.00468 * 175.30137 * 8 7 6 10 10 O 1.21587 * 119.99621 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00580 * 179.97438 * 9 8 7 12 12 C 1.47428 * 125.64652 * 0.02562 * 11 9 8 13 13 C 1.54910 * 104.92839 * 155.79618 * 12 11 9 14 14 C 1.55440 * 101.45201 * 37.00082 * 13 12 11 15 15 O 1.42904 * 110.70829 * 82.89446 * 14 13 12 16 16 C 1.50705 * 110.85899 * 206.07373 * 14 13 12 17 17 H 1.07999 * 120.00152 * 355.08964 * 16 14 13 18 18 C 1.37881 * 120.00092 * 175.09155 * 16 14 13 19 19 N 1.31521 * 119.99519 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00223 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46952 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47300 * 119.99705 * 20 18 16 23 23 H 1.48502 * 109.46977 * 239.99834 * 20 18 16 24 24 C 1.47023 * 125.65258 * 179.97438 * 11 9 8 25 25 C 1.53785 * 113.61584 * 197.04840 * 6 4 3 26 26 C 1.53955 * 87.01713 * 89.23302 * 25 6 4 27 27 C 1.53774 * 87.11290 * 25.36125 * 26 25 6 28 28 H 1.09002 * 109.47207 * 299.99918 * 1 2 3 29 29 H 1.09001 * 109.47047 * 60.00233 * 1 2 3 30 30 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47207 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47316 * 120.00209 * 2 1 3 33 33 H 0.97003 * 120.00021 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47042 * 296.72385 * 7 6 4 35 35 H 1.08997 * 109.47626 * 176.71919 * 7 6 4 36 36 H 0.97005 * 119.99914 * 355.29720 * 8 7 6 37 37 H 1.09000 * 110.36115 * 274.68527 * 12 11 9 38 38 H 1.08998 * 110.36755 * 36.89911 * 12 11 9 39 39 H 1.09000 * 111.00285 * 155.14143 * 13 12 11 40 40 H 1.08999 * 111.00470 * 278.98707 * 13 12 11 41 41 H 0.96698 * 113.99863 * 184.99866 * 15 14 13 42 42 H 0.97005 * 119.99383 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.88056 * 300.50016 * 24 11 9 44 44 H 1.09003 * 109.88292 * 61.50238 * 24 11 9 45 45 H 1.09000 * 113.61409 * 203.75253 * 25 6 4 46 46 H 1.09003 * 113.61321 * 334.65764 * 25 6 4 47 47 H 1.09005 * 113.53867 * 270.81234 * 26 25 6 48 48 H 1.09002 * 113.74243 * 139.94480 * 26 25 6 49 49 H 1.09006 * 113.61872 * 220.08764 * 27 26 25 50 50 H 1.09009 * 113.61318 * 89.18722 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1307 0.7100 0.0966 6 6 3.8467 3.0429 -0.1185 7 6 3.4797 3.9076 1.0892 8 7 3.9961 3.2849 2.3106 9 6 3.8746 3.9189 3.4936 10 8 3.3367 5.0081 3.5471 11 7 4.3491 3.3459 4.6173 12 6 5.0206 2.0357 4.6961 13 6 5.8904 2.1094 5.9758 14 6 4.9733 2.9299 6.9255 15 8 4.0098 2.0824 7.5545 16 6 5.7897 3.6637 7.9581 17 1 6.8574 3.5102 8.0112 18 6 5.1735 4.5311 8.8350 19 7 3.8734 4.7185 8.7700 20 14 6.1855 5.4412 10.1145 21 1 7.6140 5.0587 9.9793 22 1 6.0429 6.9049 9.9087 23 1 5.7039 5.0830 11.4728 24 6 4.2840 3.9241 5.9675 25 6 5.3291 3.1382 -0.5165 26 6 4.8534 3.1300 -1.9807 27 6 3.5204 3.7013 -1.4694 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3880 2.1185 -0.0004 34 1 2.3954 3.9957 1.1568 35 1 3.9183 4.8987 0.9733 36 1 4.4255 2.4161 2.2679 37 1 4.2842 1.2368 4.7834 38 1 5.6484 1.8779 3.8192 39 1 6.0806 1.1138 6.3767 40 1 6.8249 2.6363 5.7832 41 1 3.3650 2.5556 8.0979 42 1 3.4399 5.3290 9.3867 43 1 4.8065 4.8806 5.9867 44 1 3.2436 4.0644 6.2610 45 1 5.8026 4.0730 -0.2165 46 1 5.9125 2.2596 -0.2411 47 1 4.7658 2.1295 -2.4044 48 1 5.4040 3.8157 -2.6249 49 1 2.6457 3.2767 -1.9621 50 1 3.4985 4.7904 -1.4304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592018224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:24 Heat of formation + Delta-G solvation = -122.344119 kcal Electronic energy + Delta-G solvation = -31024.446936 eV Core-core repulsion = 26858.065006 eV Total energy + Delta-G solvation = -4166.381930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.03112 -41.08033 -39.20572 -38.62338 -36.32462 -36.09110 -35.44752 -34.23497 -31.94316 -31.55877 -29.84894 -29.13638 -26.92306 -26.59172 -25.25637 -24.22968 -23.46316 -22.37101 -21.48187 -21.06370 -20.15706 -19.34091 -18.93652 -17.81241 -17.30339 -17.26740 -16.89891 -16.77819 -16.71018 -16.20117 -15.87040 -15.64959 -15.28495 -15.16709 -14.79779 -14.67954 -14.55830 -14.46501 -13.83878 -13.77860 -13.53649 -13.50143 -13.28185 -13.20992 -12.87333 -12.78580 -12.71692 -12.56686 -12.40457 -12.36380 -12.25647 -12.11303 -11.90546 -11.55347 -11.36173 -11.26257 -11.18704 -10.84692 -10.66387 -10.30735 -10.26693 -10.13207 -9.44374 -8.26474 -6.42183 1.40107 1.43409 1.48193 1.54348 1.61801 2.09393 2.13145 2.38008 2.94536 3.00119 3.35184 3.56656 3.59442 3.75547 3.76089 3.88223 4.02802 4.12181 4.13751 4.19878 4.31871 4.38090 4.48544 4.51841 4.54499 4.68690 4.69773 4.77942 4.83830 4.91237 5.02529 5.03028 5.04047 5.08932 5.09041 5.13815 5.19953 5.23628 5.32593 5.39580 5.42988 5.45298 5.47246 5.73621 5.98823 6.11198 6.46231 6.64442 6.96807 7.15240 7.26974 7.34627 7.50053 8.80023 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002775 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.537284 B =10088.541197 C =10689.865567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.717 5.717 4 C 0.537 3.463 5 O -0.571 6.571 6 C -0.122 4.122 7 C 0.159 3.841 8 N -0.733 5.733 9 C 0.713 3.287 10 O -0.637 6.637 11 N -0.635 5.635 12 C 0.110 3.890 13 C -0.110 4.110 14 C 0.234 3.766 15 O -0.587 6.587 16 C -0.556 4.556 17 H 0.067 0.933 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.277 1.277 24 C 0.144 3.856 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.102 4.102 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -5.853 -23.199 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.012 4.012 3 N -0.369 5.369 4 C 0.323 3.677 5 O -0.450 6.450 6 C -0.126 4.126 7 C 0.036 3.964 8 N -0.390 5.390 9 C 0.415 3.585 10 O -0.519 6.519 11 N -0.372 5.372 12 C -0.013 4.013 13 C -0.147 4.147 14 C 0.194 3.806 15 O -0.395 6.395 16 C -0.594 4.594 17 H 0.085 0.915 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.203 1.203 24 C 0.020 3.980 25 C -0.159 4.159 26 C -0.172 4.172 27 C -0.140 4.140 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.224 0.776 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.674 -6.090 -23.429 24.485 hybrid contribution -0.201 0.968 1.523 1.816 sum -3.875 -5.122 -21.906 22.828 Atomic orbital electron populations 1.21962 0.92203 1.04188 1.03136 1.21382 0.96071 0.82213 1.01534 1.45995 1.06663 1.09878 1.74405 1.20127 0.82605 0.90097 0.74890 1.90694 1.56446 1.47130 1.50700 1.22348 1.00843 0.92167 0.97202 1.21233 0.99262 0.95927 0.80025 1.45029 1.65018 1.23622 1.05283 1.15664 0.79202 0.83284 0.80390 1.90847 1.52049 1.22791 1.86220 1.47901 1.61021 1.21590 1.06661 1.22304 0.95414 0.84274 0.99270 1.22758 0.97421 1.01303 0.93253 1.19767 0.85696 0.86277 0.88907 1.86100 1.46358 1.39149 1.67899 1.21833 0.95036 1.25660 1.16904 0.91516 1.25823 0.96158 0.96522 0.99049 1.69820 1.09857 1.37342 1.38372 0.85405 0.79179 0.77861 0.78579 1.18937 1.20896 1.20284 1.22332 0.98879 0.97140 0.79615 1.22943 0.92833 1.03072 0.97066 1.22824 0.96979 1.01575 0.95804 1.22955 0.98925 1.02060 0.90065 0.92186 0.90526 0.89705 0.91528 0.93202 0.75145 0.91182 0.90182 0.76350 0.91706 0.89218 0.89229 0.89740 0.77558 0.92079 0.95000 0.95197 0.88405 0.91697 0.90977 0.89011 0.89295 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.03 71.98 0.72 -0.81 16 2 C 0.11 1.72 6.40 86.38 0.55 2.27 16 3 N -0.72 -11.71 5.55 -463.07 -2.57 -14.29 16 4 C 0.54 11.42 5.65 87.66 0.49 11.92 16 5 O -0.57 -16.36 15.95 -3.04 -0.05 -16.41 16 6 C -0.12 -2.15 0.83 -52.40 -0.04 -2.19 16 7 C 0.16 3.64 5.00 86.38 0.43 4.07 16 8 N -0.73 -22.05 5.33 -478.54 -2.55 -24.60 16 9 C 0.71 29.24 8.49 179.06 1.52 30.76 16 10 O -0.64 -30.98 16.67 -3.99 -0.07 -31.05 16 11 N -0.64 -27.15 3.33 -829.76 -2.76 -29.91 16 12 C 0.11 3.92 6.56 86.85 0.57 4.49 16 13 C -0.11 -4.36 6.26 32.09 0.20 -4.16 16 14 C 0.23 11.59 0.85 -10.25 -0.01 11.58 16 15 O -0.59 -30.25 13.08 -148.98 -1.95 -32.20 16 16 C -0.56 -29.63 8.13 25.60 0.21 -29.42 16 17 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 18 C 0.03 1.35 5.28 84.65 0.45 1.80 16 19 N -0.91 -50.32 10.96 21.45 0.24 -50.08 16 20 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.14 7.37 5.24 86.73 0.45 7.82 16 25 C -0.12 -2.16 7.11 31.18 0.22 -1.94 16 26 C -0.13 -1.76 7.81 31.18 0.24 -1.52 16 27 C -0.10 -1.13 7.22 31.12 0.22 -0.90 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 4.94 8.48 -92.71 -0.79 4.15 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 36 H 0.40 11.48 6.41 -92.70 -0.59 10.89 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.62 7.29 -2.39 -0.02 2.60 16 39 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.08 3.22 8.05 -2.39 -0.02 3.20 16 41 H 0.38 20.08 7.45 -74.06 -0.55 19.53 16 42 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 43 H 0.03 1.79 7.82 -2.38 -0.02 1.77 16 44 H 0.03 1.69 7.92 -2.39 -0.02 1.67 16 45 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 46 H 0.06 1.43 7.34 -2.39 -0.02 1.41 16 47 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.75 8.09 -2.38 -0.02 0.73 16 50 H 0.11 0.95 8.10 -2.38 -0.02 0.93 16 Total: -1.00 -71.37 403.23 -2.41 -73.79 By element: Atomic # 1 Polarization: 47.40 SS G_CDS: -0.97 Total: 46.43 kcal Atomic # 6 Polarization: 27.52 SS G_CDS: 6.24 Total: 33.76 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -7.65 Total: -118.88 kcal Atomic # 8 Polarization: -77.60 SS G_CDS: -2.06 Total: -79.66 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.37 -2.41 -73.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.556 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds