Wall clock time and date at job start Wed Apr 1 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47374 * 2 1 4 4 C 1.34771 * 120.00464 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99971 * 354.93891 * 4 3 2 6 6 C 1.50694 * 120.00256 * 174.93770 * 4 3 2 7 7 C 1.52992 * 112.85259 * 294.09787 * 6 4 3 8 8 N 1.46496 * 109.47516 * 293.94387 * 7 6 4 9 9 C 1.34777 * 120.00265 * 175.08793 * 8 7 6 10 10 O 1.21591 * 119.99763 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00191 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.64987 * 359.95758 * 11 9 8 13 13 C 1.55124 * 104.94353 * 204.03934 * 12 11 9 14 14 C 1.55147 * 101.48688 * 323.22103 * 13 12 11 15 15 O 1.42902 * 110.72395 * 276.83027 * 14 13 12 16 16 C 1.50698 * 110.72124 * 153.73153 * 14 13 12 17 17 H 1.07996 * 120.00159 * 2.44492 * 16 14 13 18 18 C 1.37880 * 120.00314 * 182.16298 * 16 14 13 19 19 N 1.31518 * 119.99826 * 0.28160 * 18 16 14 20 20 Si 1.86800 * 120.00166 * 180.27861 * 18 16 14 21 21 H 1.48496 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47133 * 120.00641 * 20 18 16 23 23 H 1.48505 * 109.47022 * 240.00019 * 20 18 16 24 24 C 1.47025 * 125.64918 * 180.02562 * 11 9 8 25 25 C 1.53786 * 113.68810 * 65.37215 * 6 4 3 26 26 C 1.53778 * 87.08141 * 89.12606 * 25 6 4 27 27 C 1.53776 * 87.08630 * 25.43274 * 26 25 6 28 28 H 1.08997 * 109.47048 * 300.00690 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00473 * 1 2 3 30 30 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47486 * 239.99458 * 2 1 3 32 32 H 1.09001 * 109.46947 * 119.99527 * 2 1 3 33 33 H 0.97004 * 119.99842 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47211 * 173.93919 * 7 6 4 35 35 H 1.09004 * 109.47020 * 53.94904 * 7 6 4 36 36 H 0.97001 * 120.00014 * 355.09065 * 8 7 6 37 37 H 1.08997 * 110.36483 * 323.00590 * 12 11 9 38 38 H 1.09000 * 110.36852 * 85.32439 * 12 11 9 39 39 H 1.09002 * 111.16009 * 205.12482 * 13 12 11 40 40 H 1.09003 * 110.93410 * 81.21484 * 13 12 11 41 41 H 0.96696 * 114.00005 * 177.56011 * 15 14 13 42 42 H 0.97001 * 119.99941 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88659 * 59.48372 * 24 11 9 44 44 H 1.09005 * 110.00986 * 298.38897 * 24 11 9 45 45 H 1.09001 * 113.60984 * 203.67626 * 25 6 4 46 46 H 1.08997 * 113.61429 * 334.57373 * 25 6 4 47 47 H 1.08999 * 113.61486 * 270.87889 * 26 25 6 48 48 H 1.09003 * 113.69089 * 139.98965 * 26 25 6 49 49 H 1.09001 * 113.61629 * 220.01839 * 27 26 25 50 50 H 1.09002 * 113.69377 * 89.12510 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1308 0.7097 0.0937 6 6 3.8467 3.0432 -0.1146 7 6 3.5240 3.6804 -1.4676 8 7 4.2624 2.9840 -2.5240 9 6 4.0582 3.3094 -3.8158 10 8 3.2614 4.1814 -4.1045 11 7 4.7372 2.6685 -4.7876 12 6 5.7288 1.5974 -4.5800 13 6 6.6301 1.6367 -5.8420 14 6 5.5972 1.9757 -6.9489 15 8 4.9285 0.7945 -7.3955 16 6 6.2643 2.6774 -8.1038 17 1 7.3319 2.8398 -8.0931 18 6 5.5125 3.1068 -9.1768 19 7 4.2123 2.9091 -9.1900 20 14 6.3406 3.9696 -10.6119 21 1 7.7999 4.0674 -10.3552 22 1 6.1082 3.1939 -11.8567 23 1 5.7718 5.3328 -10.7648 24 6 4.6128 2.9225 -6.2304 25 6 3.4788 3.9294 1.0872 26 6 4.7915 3.4592 1.7356 27 6 5.3150 3.2116 0.3110 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 3.8145 4.7308 -1.4531 35 1 2.4539 3.6021 -1.6601 36 1 4.8983 2.2887 -2.2937 37 1 6.3187 1.7950 -3.6851 38 1 5.2319 0.6304 -4.5021 39 1 7.0942 0.6674 -6.0243 40 1 7.3839 2.4194 -5.7580 41 1 4.2460 0.9567 -8.0611 42 1 3.6834 3.2115 -9.9447 43 1 4.8696 3.9592 -6.4479 44 1 3.5940 2.7164 -6.5589 45 1 3.4632 4.9945 0.8557 46 1 2.5864 3.5974 1.6175 47 1 4.6853 2.5492 2.3261 48 1 5.3252 4.2479 2.2658 49 1 5.9048 2.3000 0.2148 50 1 5.8017 4.0796 -0.1338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:29 Heat of formation + Delta-G solvation = -97.765474 kcal Electronic energy + Delta-G solvation = -30990.212784 eV Core-core repulsion = 26824.896664 eV Total energy + Delta-G solvation = -4165.316120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11744 -39.49427 -37.97656 -37.27433 -35.49308 -34.24667 -34.05353 -32.16788 -31.01408 -30.11245 -28.47974 -27.58776 -25.98547 -25.16263 -24.16702 -22.94079 -22.38139 -21.61710 -19.67037 -19.53740 -19.28563 -17.74880 -17.07556 -16.76092 -16.43090 -15.95602 -15.71470 -15.33549 -15.16204 -14.93374 -14.83687 -14.28013 -14.04369 -13.80989 -13.68787 -13.23490 -12.97132 -12.88941 -12.84774 -12.67684 -12.58118 -12.15450 -12.10526 -12.08444 -11.77363 -11.62229 -11.40526 -11.23931 -11.05071 -10.78553 -10.71441 -10.61507 -10.58261 -10.45436 -10.14505 -9.96127 -9.61510 -9.31507 -9.30321 -8.85256 -8.65647 -8.28509 -7.73341 -6.26566 -4.34778 2.39096 2.87306 3.08868 3.22205 3.30513 3.34154 3.74359 4.08255 4.21195 4.28898 4.34565 4.47427 4.56894 4.59552 4.75694 4.80391 5.01354 5.04280 5.08861 5.34893 5.40709 5.42467 5.44082 5.49918 5.58417 5.62208 5.64522 5.74030 5.75363 5.81725 5.84743 5.86109 6.06161 6.07799 6.12839 6.18228 6.54445 6.72056 6.75925 6.91391 7.01113 7.23186 7.27977 7.34930 7.65002 7.75916 7.98740 8.05510 8.54036 8.69171 9.13065 9.33310 9.43143 10.81319 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002752 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.065188 B =10173.267476 C =10710.049804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.727 5.727 4 C 0.542 3.458 5 O -0.533 6.533 6 C -0.126 4.126 7 C 0.164 3.836 8 N -0.751 5.751 9 C 0.716 3.284 10 O -0.599 6.599 11 N -0.628 5.628 12 C 0.103 3.897 13 C -0.115 4.115 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.123 3.877 25 C -0.117 4.117 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.384 0.616 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -1.120 21.842 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.380 5.380 4 C 0.328 3.672 5 O -0.409 6.409 6 C -0.130 4.130 7 C 0.039 3.961 8 N -0.409 5.409 9 C 0.418 3.582 10 O -0.478 6.478 11 N -0.365 5.365 12 C -0.020 4.020 13 C -0.153 4.153 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.001 3.999 25 C -0.155 4.155 26 C -0.178 4.178 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.078 -1.380 22.020 22.436 hybrid contribution -0.206 0.760 -1.149 1.393 sum -4.283 -0.621 20.871 21.315 Atomic orbital electron populations 1.22008 0.94330 1.03336 1.02632 1.21317 0.94372 0.82772 1.02474 1.45959 1.07089 1.09077 1.75846 1.19822 0.82197 0.89938 0.75244 1.90703 1.55408 1.45967 1.48825 1.22360 1.00497 0.93414 0.96723 1.20944 0.96735 0.95720 0.82703 1.45079 1.47749 1.43574 1.04482 1.15480 0.81136 0.81704 0.79871 1.90879 1.39709 1.35177 1.82050 1.47926 1.42514 1.38407 1.07652 1.22265 0.90453 0.90697 0.98593 1.22758 0.97297 1.01920 0.93353 1.19505 0.87121 0.82282 0.90395 1.86092 1.56534 1.34144 1.62701 1.21554 0.94890 1.38015 1.02946 0.91482 1.25081 0.94871 0.94850 0.98531 1.69658 1.05008 1.46896 1.31813 0.86344 0.79692 0.79153 0.81689 1.19599 1.20768 1.20776 1.22864 1.01340 1.01102 0.74641 1.22935 0.98679 0.99785 0.94107 1.22839 0.96549 1.01625 0.96772 1.22861 0.93464 1.03480 0.95662 0.92042 0.91708 0.90709 0.91347 0.91480 0.76467 0.90788 0.91454 0.76925 0.92611 0.92094 0.90551 0.90541 0.76522 0.92048 0.91825 0.92006 0.88414 0.90905 0.90084 0.90736 0.89684 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.03 37.16 0.37 -0.65 16 2 C 0.11 1.00 6.40 -4.04 -0.03 0.97 16 3 N -0.73 -6.72 5.55 -60.29 -0.33 -7.05 16 4 C 0.54 6.25 6.25 -10.99 -0.07 6.18 16 5 O -0.53 -7.94 15.95 5.55 0.09 -7.85 16 6 C -0.13 -1.22 0.75 -154.85 -0.12 -1.34 16 7 C 0.16 2.01 4.99 -4.05 -0.02 1.99 16 8 N -0.75 -11.64 5.27 -65.23 -0.34 -11.98 16 9 C 0.72 14.71 8.49 -86.93 -0.74 13.97 16 10 O -0.60 -14.38 16.67 5.29 0.09 -14.29 16 11 N -0.63 -13.37 3.33 -176.10 -0.59 -13.96 16 12 C 0.10 1.91 6.57 -2.41 -0.02 1.89 16 13 C -0.12 -2.35 6.24 -24.47 -0.15 -2.50 16 14 C 0.25 6.07 0.85 -89.94 -0.08 6.00 16 15 O -0.59 -14.98 13.08 -35.23 -0.46 -15.44 16 16 C -0.54 -14.12 8.11 -34.44 -0.28 -14.40 16 17 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.89 -24.03 10.96 55.43 0.61 -23.42 16 20 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.12 3.04 5.39 -3.06 -0.02 3.02 16 25 C -0.12 -0.81 7.22 -25.92 -0.19 -0.99 16 26 C -0.14 -1.06 7.80 -25.92 -0.20 -1.27 16 27 C -0.12 -1.09 6.79 -25.92 -0.18 -1.27 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 2.83 8.48 -40.82 -0.35 2.49 16 34 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.81 6.71 -40.82 -0.27 5.54 16 37 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 41 H 0.38 10.08 7.21 45.56 0.33 10.41 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.71 7.81 -51.93 -0.41 1.31 16 44 H 0.06 1.68 8.00 -51.93 -0.42 1.26 16 45 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 46 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.93 7.34 -51.93 -0.38 0.55 16 50 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -32.43 403.49 -9.41 -41.84 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -7.74 Total: 17.14 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.80 Total: 13.35 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.66 Total: -56.41 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.28 Total: -37.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.43 -9.41 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.922 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds