Wall clock time and date at job start Wed Apr 1 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47374 * 2 1 4 4 C 1.34771 * 120.00464 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99971 * 354.93891 * 4 3 2 6 6 C 1.50694 * 120.00256 * 174.93770 * 4 3 2 7 7 C 1.52992 * 112.85259 * 294.09787 * 6 4 3 8 8 N 1.46496 * 109.47516 * 293.94387 * 7 6 4 9 9 C 1.34777 * 120.00265 * 175.08793 * 8 7 6 10 10 O 1.21591 * 119.99763 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00191 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.64987 * 359.95758 * 11 9 8 13 13 C 1.55124 * 104.94353 * 204.03934 * 12 11 9 14 14 C 1.55147 * 101.48688 * 323.22103 * 13 12 11 15 15 O 1.42902 * 110.72395 * 276.83027 * 14 13 12 16 16 C 1.50698 * 110.72124 * 153.73153 * 14 13 12 17 17 H 1.07996 * 120.00159 * 2.44492 * 16 14 13 18 18 C 1.37880 * 120.00314 * 182.16298 * 16 14 13 19 19 N 1.31518 * 119.99826 * 0.28160 * 18 16 14 20 20 Si 1.86800 * 120.00166 * 180.27861 * 18 16 14 21 21 H 1.48496 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47133 * 120.00641 * 20 18 16 23 23 H 1.48505 * 109.47022 * 240.00019 * 20 18 16 24 24 C 1.47025 * 125.64918 * 180.02562 * 11 9 8 25 25 C 1.53786 * 113.68810 * 65.37215 * 6 4 3 26 26 C 1.53778 * 87.08141 * 89.12606 * 25 6 4 27 27 C 1.53776 * 87.08630 * 25.43274 * 26 25 6 28 28 H 1.08997 * 109.47048 * 300.00690 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00473 * 1 2 3 30 30 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47486 * 239.99458 * 2 1 3 32 32 H 1.09001 * 109.46947 * 119.99527 * 2 1 3 33 33 H 0.97004 * 119.99842 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47211 * 173.93919 * 7 6 4 35 35 H 1.09004 * 109.47020 * 53.94904 * 7 6 4 36 36 H 0.97001 * 120.00014 * 355.09065 * 8 7 6 37 37 H 1.08997 * 110.36483 * 323.00590 * 12 11 9 38 38 H 1.09000 * 110.36852 * 85.32439 * 12 11 9 39 39 H 1.09002 * 111.16009 * 205.12482 * 13 12 11 40 40 H 1.09003 * 110.93410 * 81.21484 * 13 12 11 41 41 H 0.96696 * 114.00005 * 177.56011 * 15 14 13 42 42 H 0.97001 * 119.99941 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88659 * 59.48372 * 24 11 9 44 44 H 1.09005 * 110.00986 * 298.38897 * 24 11 9 45 45 H 1.09001 * 113.60984 * 203.67626 * 25 6 4 46 46 H 1.08997 * 113.61429 * 334.57373 * 25 6 4 47 47 H 1.08999 * 113.61486 * 270.87889 * 26 25 6 48 48 H 1.09003 * 113.69089 * 139.98965 * 26 25 6 49 49 H 1.09001 * 113.61629 * 220.01839 * 27 26 25 50 50 H 1.09002 * 113.69377 * 89.12510 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1308 0.7097 0.0937 6 6 3.8467 3.0432 -0.1146 7 6 3.5240 3.6804 -1.4676 8 7 4.2624 2.9840 -2.5240 9 6 4.0582 3.3094 -3.8158 10 8 3.2614 4.1814 -4.1045 11 7 4.7372 2.6685 -4.7876 12 6 5.7288 1.5974 -4.5800 13 6 6.6301 1.6367 -5.8420 14 6 5.5972 1.9757 -6.9489 15 8 4.9285 0.7945 -7.3955 16 6 6.2643 2.6774 -8.1038 17 1 7.3319 2.8398 -8.0931 18 6 5.5125 3.1068 -9.1768 19 7 4.2123 2.9091 -9.1900 20 14 6.3406 3.9696 -10.6119 21 1 7.7999 4.0674 -10.3552 22 1 6.1082 3.1939 -11.8567 23 1 5.7718 5.3328 -10.7648 24 6 4.6128 2.9225 -6.2304 25 6 3.4788 3.9294 1.0872 26 6 4.7915 3.4592 1.7356 27 6 5.3150 3.2116 0.3110 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 3.8145 4.7308 -1.4531 35 1 2.4539 3.6021 -1.6601 36 1 4.8983 2.2887 -2.2937 37 1 6.3187 1.7950 -3.6851 38 1 5.2319 0.6304 -4.5021 39 1 7.0942 0.6674 -6.0243 40 1 7.3839 2.4194 -5.7580 41 1 4.2460 0.9567 -8.0611 42 1 3.6834 3.2115 -9.9447 43 1 4.8696 3.9592 -6.4479 44 1 3.5940 2.7164 -6.5589 45 1 3.4632 4.9945 0.8557 46 1 2.5864 3.5974 1.6175 47 1 4.6853 2.5492 2.3261 48 1 5.3252 4.2479 2.2658 49 1 5.9048 2.3000 0.2148 50 1 5.8017 4.0796 -0.1338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592018226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:28 Heat of formation + Delta-G solvation = -122.622009 kcal Electronic energy + Delta-G solvation = -30991.290644 eV Core-core repulsion = 26824.896664 eV Total energy + Delta-G solvation = -4166.393980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02092 -41.08142 -39.21406 -38.63171 -36.33530 -36.09997 -35.41909 -34.20378 -31.95198 -31.58059 -29.85094 -29.14794 -26.93773 -26.58785 -25.25305 -24.20344 -23.46973 -22.39598 -21.46602 -21.04619 -20.17147 -19.35337 -18.95746 -17.78603 -17.30011 -17.28328 -16.90557 -16.76246 -16.73544 -16.18557 -15.89416 -15.67060 -15.27862 -15.14439 -14.78995 -14.69140 -14.48325 -14.45535 -13.89329 -13.74384 -13.53045 -13.49882 -13.28604 -13.21015 -12.87704 -12.85311 -12.74463 -12.55558 -12.42073 -12.34103 -12.25584 -12.11677 -11.89016 -11.51744 -11.33164 -11.26817 -11.19859 -10.86884 -10.65751 -10.30914 -10.26662 -10.13829 -9.44025 -8.26776 -6.42568 1.40330 1.43541 1.49519 1.54561 1.61627 2.09431 2.13605 2.37917 2.94944 2.99714 3.36963 3.57171 3.60177 3.76899 3.77294 3.89033 4.04464 4.10300 4.14237 4.17635 4.32556 4.38985 4.46242 4.51706 4.54816 4.68419 4.70019 4.78803 4.84787 4.89840 5.00894 5.02037 5.04689 5.09304 5.09586 5.15089 5.20400 5.21655 5.33664 5.40583 5.43653 5.44299 5.47271 5.74376 5.99094 6.11392 6.46589 6.64144 6.98064 7.15740 7.28119 7.35672 7.50601 8.79831 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002752 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.065188 B =10173.267476 C =10710.049804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.719 5.719 4 C 0.536 3.464 5 O -0.572 6.572 6 C -0.123 4.123 7 C 0.161 3.839 8 N -0.732 5.732 9 C 0.712 3.288 10 O -0.638 6.638 11 N -0.634 5.634 12 C 0.109 3.891 13 C -0.109 4.109 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.556 4.556 17 H 0.068 0.932 18 C 0.025 3.975 19 N -0.917 5.917 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.283 1.283 24 C 0.142 3.858 25 C -0.103 4.103 26 C -0.134 4.134 27 C -0.121 4.121 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.413 0.587 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.403 0.597 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.033 0.967 44 H 0.027 0.973 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 -0.533 23.715 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.371 5.371 4 C 0.323 3.677 5 O -0.451 6.451 6 C -0.126 4.126 7 C 0.037 3.963 8 N -0.389 5.389 9 C 0.414 3.586 10 O -0.520 6.520 11 N -0.371 5.371 12 C -0.013 4.013 13 C -0.147 4.147 14 C 0.193 3.807 15 O -0.397 6.397 16 C -0.594 4.594 17 H 0.086 0.914 18 C -0.176 4.176 19 N -0.556 5.556 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.209 1.209 24 C 0.018 3.982 25 C -0.141 4.141 26 C -0.172 4.172 27 C -0.159 4.159 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.239 0.761 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.134 0.866 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.084 0.916 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.633 -0.808 23.955 24.242 hybrid contribution -0.386 0.554 -1.691 1.821 sum -4.019 -0.254 22.263 22.625 Atomic orbital electron populations 1.21958 0.92061 1.04202 1.03195 1.21364 0.96188 0.82340 1.01320 1.45977 1.06772 1.09795 1.74534 1.20176 0.82546 0.90280 0.74710 1.90685 1.56442 1.47177 1.50790 1.22337 1.01265 0.92823 0.96213 1.21197 0.96254 0.96127 0.82752 1.44997 1.47425 1.43244 1.03192 1.15674 0.80622 0.81223 0.81063 1.90845 1.41349 1.36911 1.82932 1.47873 1.43491 1.39281 1.06467 1.22356 0.89783 0.89885 0.99310 1.22753 0.96713 1.02891 0.92336 1.19719 0.87858 0.81969 0.91198 1.86084 1.56389 1.34786 1.62476 1.21859 0.95096 1.38529 1.03904 0.91386 1.25838 0.95404 0.95450 1.00921 1.69761 1.06043 1.47412 1.32392 0.85389 0.78976 0.77845 0.78716 1.18868 1.20320 1.20890 1.22355 0.99314 0.99368 0.77128 1.22978 0.99017 1.00143 0.91939 1.22786 0.96869 1.01811 0.95690 1.22910 0.92847 1.02925 0.97234 0.90399 0.92112 0.89759 0.93560 0.91636 0.75071 0.89893 0.91678 0.76148 0.88758 0.91948 0.89259 0.89592 0.77345 0.92021 0.94875 0.95469 0.86613 0.89384 0.91059 0.88929 0.91561 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.03 71.98 0.72 -0.97 16 2 C 0.11 1.88 6.40 86.38 0.55 2.44 16 3 N -0.72 -12.41 5.55 -463.06 -2.57 -14.98 16 4 C 0.54 11.80 6.25 87.66 0.55 12.35 16 5 O -0.57 -16.88 15.95 -3.05 -0.05 -16.92 16 6 C -0.12 -2.15 0.75 -52.40 -0.04 -2.19 16 7 C 0.16 3.67 4.99 86.38 0.43 4.10 16 8 N -0.73 -21.90 5.27 -478.56 -2.52 -24.42 16 9 C 0.71 29.21 8.49 179.06 1.52 30.73 16 10 O -0.64 -31.08 16.67 -4.00 -0.07 -31.15 16 11 N -0.63 -27.09 3.33 -829.31 -2.76 -29.84 16 12 C 0.11 3.86 6.57 86.93 0.57 4.44 16 13 C -0.11 -4.32 6.24 32.06 0.20 -4.12 16 14 C 0.23 11.56 0.85 -10.35 -0.01 11.55 16 15 O -0.59 -30.67 13.08 -148.98 -1.95 -32.62 16 16 C -0.56 -29.53 8.11 25.60 0.21 -29.32 16 17 H 0.07 3.51 7.77 -2.91 -0.02 3.49 16 18 C 0.02 1.30 5.28 84.65 0.45 1.75 16 19 N -0.92 -50.46 10.96 21.45 0.24 -50.22 16 20 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 C 0.14 7.28 5.39 86.73 0.47 7.74 16 25 C -0.10 -1.10 7.22 31.12 0.22 -0.87 16 26 C -0.13 -1.69 7.80 31.12 0.24 -1.45 16 27 C -0.12 -2.05 6.79 31.12 0.21 -1.84 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.41 5.05 8.48 -92.71 -0.79 4.27 16 34 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 35 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.40 11.22 6.71 -92.71 -0.62 10.59 16 37 H 0.09 2.64 7.30 -2.39 -0.02 2.62 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.22 8.03 -2.39 -0.02 3.20 16 41 H 0.38 20.47 7.21 -74.06 -0.53 19.94 16 42 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.03 1.85 7.81 -2.39 -0.02 1.84 16 44 H 0.03 1.54 8.00 -2.38 -0.02 1.52 16 45 H 0.12 0.90 8.04 -2.39 -0.02 0.88 16 46 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 1.39 7.34 -2.39 -0.02 1.37 16 50 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -72.30 403.49 -2.34 -74.63 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.98 Total: 46.73 kcal Atomic # 6 Polarization: 28.05 SS G_CDS: 6.30 Total: 34.34 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -7.62 Total: -119.46 kcal Atomic # 8 Polarization: -78.63 SS G_CDS: -2.06 Total: -80.69 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.30 -2.34 -74.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.989 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds