Wall clock time and date at job start Tue Mar 31 2020 22:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47086 * 239.99549 * 2 1 3 5 5 O 1.21280 * 119.99850 * 268.63376 * 4 2 1 6 6 N 1.34771 * 119.99334 * 88.63848 * 4 2 1 7 7 C 1.46924 * 120.63442 * 354.85364 * 6 4 2 8 8 C 1.53197 * 108.77431 * 233.58592 * 7 6 4 9 9 C 1.53044 * 109.31522 * 305.36731 * 8 7 6 10 10 C 1.53042 * 109.53778 * 61.36251 * 9 8 7 11 11 H 1.09000 * 109.49361 * 58.62240 * 10 9 8 12 12 C 1.50701 * 109.49625 * 178.68550 * 10 9 8 13 13 N 1.34772 * 119.99781 * 300.00104 * 12 10 9 14 14 O 1.21277 * 120.00040 * 120.00175 * 12 10 9 15 15 C 1.46928 * 120.62635 * 174.57871 * 6 4 2 16 16 N 1.46907 * 109.46955 * 119.99877 * 2 1 3 17 17 C 1.48555 * 110.99938 * 167.75593 * 16 2 1 18 18 C 1.54385 * 104.59434 * 200.95875 * 17 16 2 19 19 C 1.54254 * 105.05794 * 23.85813 * 18 17 16 20 20 O 1.42905 * 110.32324 * 241.09925 * 19 18 17 21 21 C 1.50706 * 110.32377 * 118.99520 * 19 18 17 22 22 H 1.08001 * 119.99861 * 242.82672 * 21 19 18 23 23 C 1.37875 * 119.99805 * 62.83100 * 21 19 18 24 24 N 1.31517 * 120.00301 * 359.97438 * 23 21 19 25 25 Si 1.86798 * 119.99849 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47560 * 59.99320 * 25 23 21 27 27 H 1.48500 * 109.47052 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46782 * 299.99175 * 25 23 21 29 29 C 1.48558 * 110.99679 * 52.34187 * 16 2 1 30 30 H 1.08999 * 109.47464 * 183.95939 * 1 2 3 31 31 H 1.09005 * 109.47167 * 303.96522 * 1 2 3 32 32 H 1.09006 * 109.46914 * 63.95711 * 1 2 3 33 33 H 1.08996 * 109.58672 * 353.37352 * 7 6 4 34 34 H 1.09002 * 109.58692 * 113.80230 * 7 6 4 35 35 H 1.09002 * 109.49850 * 65.32027 * 8 7 6 36 36 H 1.08998 * 109.49897 * 185.38128 * 8 7 6 37 37 H 1.09000 * 109.46005 * 181.38581 * 9 8 7 38 38 H 1.09002 * 109.45445 * 301.34605 * 9 8 7 39 39 H 0.97001 * 120.00504 * 359.97438 * 13 12 10 40 40 H 0.97004 * 120.00297 * 179.97438 * 13 12 10 41 41 H 1.09006 * 109.58460 * 246.19840 * 15 6 4 42 42 H 1.09003 * 109.58756 * 6.62048 * 15 6 4 43 43 H 1.09002 * 110.40856 * 82.18386 * 17 16 2 44 44 H 1.08999 * 110.51648 * 319.79388 * 17 16 2 45 45 H 1.08998 * 110.32795 * 264.95950 * 18 17 16 46 46 H 1.08999 * 110.40806 * 142.79501 * 18 17 16 47 47 H 0.96698 * 113.99759 * 298.54500 * 20 19 18 48 48 H 0.96998 * 120.00227 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.41655 * 40.26277 * 29 16 2 50 50 H 1.09003 * 110.41284 * 277.81665 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2580 -1.9016 -1.1932 6 7 2.2307 -0.0223 -2.3720 7 6 1.8565 1.3954 -2.4662 8 6 0.9438 1.5846 -3.6820 9 6 1.6404 1.0343 -4.9286 10 6 1.9023 -0.4629 -4.7496 11 1 0.9577 -0.9796 -4.5797 12 6 2.5591 -1.0105 -5.9905 13 7 1.9275 -0.9305 -7.1784 14 8 3.6559 -1.5232 -5.9201 15 6 2.8310 -0.6739 -3.5442 16 7 2.0196 -0.6925 1.1995 17 6 3.4749 -0.9723 1.0959 18 6 3.7226 -2.1204 2.0980 19 6 2.3564 -2.8198 2.2518 20 8 1.9112 -2.7468 3.6077 21 6 2.4517 -4.2575 1.8098 22 1 1.8700 -4.6033 0.9681 23 6 3.2813 -5.1311 2.4801 24 7 3.9900 -4.7099 3.5048 25 14 3.4000 -6.9129 1.9319 26 1 3.8801 -6.9680 0.5278 27 1 4.3534 -7.6383 2.8094 28 1 2.0611 -7.5488 2.0225 29 6 1.3981 -2.0355 1.3298 30 1 -0.3634 -1.0252 0.0710 31 1 -0.3634 0.5742 0.8524 32 1 -0.3633 0.4512 -0.9234 33 1 1.3270 1.6944 -1.5617 34 1 2.7536 2.0030 -2.5848 35 1 0.0082 1.0487 -3.5215 36 1 0.7361 2.6458 -3.8193 37 1 1.0033 1.1900 -5.7992 38 1 2.5876 1.5537 -5.0743 39 1 1.0501 -0.5208 -7.2346 40 1 2.3504 -1.2827 -7.9772 41 1 3.8060 -0.2315 -3.7488 42 1 2.9447 -1.7406 -3.3510 43 1 4.0523 -0.0914 1.3767 44 1 3.7322 -1.2880 0.0849 45 1 4.0537 -1.7213 3.0567 46 1 4.4621 -2.8168 1.7028 47 1 2.4990 -3.1843 4.2387 48 1 4.5740 -5.3244 3.9761 49 1 1.3284 -2.5184 0.3550 50 1 0.4118 -1.9553 1.7867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:47 Heat of formation + Delta-G solvation = -107.680615 kcal Electronic energy + Delta-G solvation = -31922.467192 eV Core-core repulsion = 27756.721119 eV Total energy + Delta-G solvation = -4165.746073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90384 -39.87785 -38.08352 -36.77959 -34.82343 -34.20787 -33.05416 -31.92290 -31.90257 -31.19246 -28.01051 -27.56257 -25.94827 -25.02117 -24.53914 -22.62812 -21.87710 -20.76972 -20.13228 -19.25643 -18.69181 -17.82371 -17.23428 -16.94369 -16.72206 -16.05242 -15.50202 -15.23667 -14.87599 -14.73746 -14.69797 -14.25712 -14.10794 -13.91217 -13.67459 -13.48176 -13.29449 -12.96593 -12.72984 -12.46597 -12.09132 -12.01770 -11.77890 -11.59980 -11.45626 -11.37267 -11.19264 -11.11201 -10.95320 -10.84531 -10.54040 -10.39112 -10.33900 -10.16591 -10.14011 -10.03492 -9.95429 -9.51395 -8.94360 -8.64231 -8.40508 -7.94974 -7.54048 -6.03123 -4.08599 2.32695 2.75377 2.85752 3.32537 3.37027 3.39785 3.44864 4.21051 4.32528 4.40244 4.44411 4.54542 4.66111 4.74761 4.84506 4.99358 5.07052 5.17953 5.20747 5.26163 5.30860 5.42703 5.46663 5.48412 5.62142 5.69386 5.84166 5.88931 5.93064 5.97313 6.13023 6.21054 6.32979 6.42006 6.42074 6.46617 6.73208 6.81693 6.94709 7.08360 7.22160 7.36578 7.50009 7.68739 7.73503 7.75472 7.93263 7.99341 8.35574 8.43595 8.93847 9.58361 9.74142 11.04141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.003507 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.729674 B = 7982.814669 C = 9417.129532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 H 0.096 0.904 4 C 0.487 3.513 5 O -0.506 6.506 6 N -0.619 5.619 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.109 4.109 10 C -0.123 4.123 11 H 0.103 0.897 12 C 0.525 3.475 13 N -0.856 5.856 14 O -0.536 6.536 15 C 0.130 3.870 16 N -0.485 5.485 17 C 0.021 3.979 18 C -0.115 4.115 19 C 0.256 3.744 20 O -0.589 6.589 21 C -0.523 4.523 22 H 0.059 0.941 23 C 0.067 3.933 24 N -0.900 5.900 25 Si 0.897 3.103 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 C 0.036 3.964 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.401 0.599 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.378 0.622 48 H 0.265 0.735 49 H 0.084 0.916 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 16.736 -18.691 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 H 0.114 0.886 4 C 0.274 3.726 5 O -0.380 6.380 6 N -0.356 5.356 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.147 4.147 10 C -0.146 4.146 11 H 0.121 0.879 12 C 0.309 3.691 13 N -0.420 5.420 14 O -0.411 6.411 15 C 0.006 3.994 16 N -0.208 5.208 17 C -0.107 4.107 18 C -0.153 4.153 19 C 0.216 3.784 20 O -0.398 6.398 21 C -0.562 4.562 22 H 0.077 0.923 23 C -0.134 4.134 24 N -0.541 5.541 25 Si 0.724 3.276 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.229 0.771 40 H 0.232 0.768 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.228 0.772 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.997 16.388 -18.059 25.370 hybrid contribution 0.607 -1.616 -1.342 2.187 sum -6.390 14.772 -19.400 25.208 Atomic orbital electron populations 1.21821 0.92297 1.03804 1.01998 1.22132 0.97355 0.99237 0.87305 0.88643 1.22386 0.77328 0.88170 0.84694 1.90776 1.49596 1.14639 1.82942 1.48417 1.63323 1.11193 1.12623 1.21798 0.98912 0.82070 0.99342 1.21923 0.99097 1.01789 0.94301 1.21518 1.01573 0.93091 0.98519 1.21783 1.01369 0.97883 0.93532 0.87887 1.20519 0.85452 0.78106 0.85040 1.43877 1.23322 1.64648 1.10191 1.90793 1.20385 1.43801 1.86145 1.21355 0.94439 1.01008 0.82586 1.65912 1.05410 1.20629 1.28826 1.23337 0.88221 0.98713 1.00395 1.22784 1.01268 0.94706 0.96592 1.19168 0.87428 0.91913 0.79898 1.86124 1.54426 1.80343 1.18877 1.21682 1.24979 0.94699 1.14830 0.92273 1.24973 0.94705 0.98901 0.94802 1.69671 1.27991 1.35632 1.20777 0.86580 0.77860 0.84514 0.78605 1.20226 1.21276 1.20195 1.23446 0.97981 0.86978 1.00637 0.91259 0.90593 0.92494 0.88978 0.91330 0.90998 0.90076 0.91227 0.90999 0.77125 0.76815 0.90817 0.88144 0.92412 0.93122 0.93089 0.91306 0.77199 0.92515 0.89802 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.71 37.16 0.32 -1.50 16 2 C 0.05 0.81 2.22 -68.86 -0.15 0.66 16 3 H 0.10 1.22 6.54 -51.93 -0.34 0.88 16 4 C 0.49 7.99 5.50 -10.99 -0.06 7.92 16 5 O -0.51 -10.83 11.58 5.56 0.06 -10.76 16 6 N -0.62 -7.64 2.97 -172.50 -0.51 -8.15 16 7 C 0.10 0.81 6.09 -3.71 -0.02 0.79 16 8 C -0.13 -0.73 6.08 -26.61 -0.16 -0.90 16 9 C -0.11 -0.63 5.07 -26.69 -0.14 -0.76 16 10 C -0.12 -1.10 2.69 -91.43 -0.25 -1.35 16 11 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 12 C 0.52 5.30 7.43 -10.99 -0.08 5.22 16 13 N -0.86 -4.88 8.76 31.22 0.27 -4.60 16 14 O -0.54 -8.07 16.76 5.56 0.09 -7.98 16 15 C 0.13 1.66 5.09 -3.49 -0.02 1.64 16 16 N -0.48 -9.80 5.50 -223.40 -1.23 -11.03 16 17 C 0.02 0.45 6.11 -2.18 -0.01 0.43 16 18 C -0.11 -2.92 5.60 -25.35 -0.14 -3.06 16 19 C 0.26 6.89 1.05 -90.39 -0.10 6.79 16 20 O -0.59 -16.49 12.93 -35.23 -0.46 -16.95 16 21 C -0.52 -15.23 8.07 -34.44 -0.28 -15.50 16 22 H 0.06 1.75 7.57 -52.49 -0.40 1.35 16 23 C 0.07 1.91 5.04 -17.82 -0.09 1.82 16 24 N -0.90 -25.58 10.83 55.43 0.60 -24.98 16 25 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.04 0.85 3.99 -2.18 -0.01 0.84 16 30 H 0.07 1.05 6.56 -51.93 -0.34 0.71 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 33 H 0.09 0.67 5.04 -51.93 -0.26 0.41 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.24 7.53 -51.93 -0.39 -0.15 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.40 1.04 8.23 -40.82 -0.34 0.71 16 40 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 41 H 0.07 0.96 7.97 -51.93 -0.41 0.54 16 42 H 0.10 1.65 7.00 -51.93 -0.36 1.29 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 1.14 5.27 -51.93 -0.27 0.86 16 45 H 0.05 1.31 7.98 -51.93 -0.41 0.89 16 46 H 0.07 1.90 7.33 -51.93 -0.38 1.52 16 47 H 0.38 10.68 7.21 45.56 0.33 11.01 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.08 2.07 4.79 -51.93 -0.25 1.82 16 50 H 0.06 1.49 7.53 -51.93 -0.39 1.10 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -35.99 377.29 -8.76 -44.74 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.07 Total: 13.72 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.18 Total: 3.05 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.87 Total: -48.76 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.30 Total: -35.69 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.99 -8.76 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.937 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds