Wall clock time and date at job start Tue Mar 31 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47086 * 239.99549 * 2 1 3 5 5 O 1.21280 * 119.99850 * 268.63376 * 4 2 1 6 6 N 1.34771 * 119.99334 * 88.63848 * 4 2 1 7 7 C 1.46924 * 120.63442 * 354.85364 * 6 4 2 8 8 C 1.53197 * 108.77431 * 233.58592 * 7 6 4 9 9 C 1.53044 * 109.31522 * 305.36731 * 8 7 6 10 10 C 1.53042 * 109.53778 * 61.36251 * 9 8 7 11 11 H 1.09000 * 109.49361 * 58.62240 * 10 9 8 12 12 C 1.50701 * 109.49625 * 178.68550 * 10 9 8 13 13 N 1.34772 * 119.99781 * 300.00104 * 12 10 9 14 14 O 1.21277 * 120.00040 * 120.00175 * 12 10 9 15 15 C 1.46928 * 120.62635 * 174.57871 * 6 4 2 16 16 N 1.46907 * 109.46955 * 119.99877 * 2 1 3 17 17 C 1.48555 * 110.99938 * 167.75593 * 16 2 1 18 18 C 1.54385 * 104.59434 * 200.95875 * 17 16 2 19 19 C 1.54254 * 105.05794 * 23.85813 * 18 17 16 20 20 O 1.42905 * 110.32324 * 241.09925 * 19 18 17 21 21 C 1.50706 * 110.32377 * 118.99520 * 19 18 17 22 22 H 1.08001 * 119.99861 * 242.82672 * 21 19 18 23 23 C 1.37875 * 119.99805 * 62.83100 * 21 19 18 24 24 N 1.31517 * 120.00301 * 359.97438 * 23 21 19 25 25 Si 1.86798 * 119.99849 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47560 * 59.99320 * 25 23 21 27 27 H 1.48500 * 109.47052 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46782 * 299.99175 * 25 23 21 29 29 C 1.48558 * 110.99679 * 52.34187 * 16 2 1 30 30 H 1.08999 * 109.47464 * 183.95939 * 1 2 3 31 31 H 1.09005 * 109.47167 * 303.96522 * 1 2 3 32 32 H 1.09006 * 109.46914 * 63.95711 * 1 2 3 33 33 H 1.08996 * 109.58672 * 353.37352 * 7 6 4 34 34 H 1.09002 * 109.58692 * 113.80230 * 7 6 4 35 35 H 1.09002 * 109.49850 * 65.32027 * 8 7 6 36 36 H 1.08998 * 109.49897 * 185.38128 * 8 7 6 37 37 H 1.09000 * 109.46005 * 181.38581 * 9 8 7 38 38 H 1.09002 * 109.45445 * 301.34605 * 9 8 7 39 39 H 0.97001 * 120.00504 * 359.97438 * 13 12 10 40 40 H 0.97004 * 120.00297 * 179.97438 * 13 12 10 41 41 H 1.09006 * 109.58460 * 246.19840 * 15 6 4 42 42 H 1.09003 * 109.58756 * 6.62048 * 15 6 4 43 43 H 1.09002 * 110.40856 * 82.18386 * 17 16 2 44 44 H 1.08999 * 110.51648 * 319.79388 * 17 16 2 45 45 H 1.08998 * 110.32795 * 264.95950 * 18 17 16 46 46 H 1.08999 * 110.40806 * 142.79501 * 18 17 16 47 47 H 0.96698 * 113.99759 * 298.54500 * 20 19 18 48 48 H 0.96998 * 120.00227 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.41655 * 40.26277 * 29 16 2 50 50 H 1.09003 * 110.41284 * 277.81665 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2580 -1.9016 -1.1932 6 7 2.2307 -0.0223 -2.3720 7 6 1.8565 1.3954 -2.4662 8 6 0.9438 1.5846 -3.6820 9 6 1.6404 1.0343 -4.9286 10 6 1.9023 -0.4629 -4.7496 11 1 0.9577 -0.9796 -4.5797 12 6 2.5591 -1.0105 -5.9905 13 7 1.9275 -0.9305 -7.1784 14 8 3.6559 -1.5232 -5.9201 15 6 2.8310 -0.6739 -3.5442 16 7 2.0196 -0.6925 1.1995 17 6 3.4749 -0.9723 1.0959 18 6 3.7226 -2.1204 2.0980 19 6 2.3564 -2.8198 2.2518 20 8 1.9112 -2.7468 3.6077 21 6 2.4517 -4.2575 1.8098 22 1 1.8700 -4.6033 0.9681 23 6 3.2813 -5.1311 2.4801 24 7 3.9900 -4.7099 3.5048 25 14 3.4000 -6.9129 1.9319 26 1 3.8801 -6.9680 0.5278 27 1 4.3534 -7.6383 2.8094 28 1 2.0611 -7.5488 2.0225 29 6 1.3981 -2.0355 1.3298 30 1 -0.3634 -1.0252 0.0710 31 1 -0.3634 0.5742 0.8524 32 1 -0.3633 0.4512 -0.9234 33 1 1.3270 1.6944 -1.5617 34 1 2.7536 2.0030 -2.5848 35 1 0.0082 1.0487 -3.5215 36 1 0.7361 2.6458 -3.8193 37 1 1.0033 1.1900 -5.7992 38 1 2.5876 1.5537 -5.0743 39 1 1.0501 -0.5208 -7.2346 40 1 2.3504 -1.2827 -7.9772 41 1 3.8060 -0.2315 -3.7488 42 1 2.9447 -1.7406 -3.3510 43 1 4.0523 -0.0914 1.3767 44 1 3.7322 -1.2880 0.0849 45 1 4.0537 -1.7213 3.0567 46 1 4.4621 -2.8168 1.7028 47 1 2.4990 -3.1843 4.2387 48 1 4.5740 -5.3244 3.9761 49 1 1.3284 -2.5184 0.3550 50 1 0.4118 -1.9553 1.7867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:46 Heat of formation + Delta-G solvation = -140.291145 kcal Electronic energy + Delta-G solvation = -31923.881291 eV Core-core repulsion = 27756.721119 eV Total energy + Delta-G solvation = -4167.160172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04929 -40.90860 -39.47798 -38.06762 -36.58325 -35.03537 -34.15312 -34.08700 -33.10543 -32.08144 -29.92739 -29.25324 -27.14551 -26.45155 -25.61544 -23.90042 -22.74092 -22.25934 -21.30425 -20.92142 -19.76322 -18.99210 -18.69607 -18.13885 -17.76120 -17.42782 -17.00766 -16.54420 -16.24786 -16.16936 -15.76255 -15.49522 -15.33317 -15.07527 -14.95601 -14.81616 -14.39095 -14.29147 -14.11419 -13.67338 -13.49535 -13.38762 -13.31913 -13.05011 -12.93656 -12.72033 -12.57751 -12.39146 -12.35148 -12.19445 -12.09375 -11.97476 -11.83135 -11.74326 -11.63707 -11.14609 -11.04040 -10.94518 -10.71185 -10.60100 -10.11875 -9.67142 -9.17921 -8.22390 -6.35901 1.34096 1.36206 1.44067 1.54355 1.54973 1.86323 2.35998 2.62457 3.01939 3.03807 3.44768 3.64857 3.80365 3.82608 3.89368 3.98063 4.07678 4.10960 4.19987 4.22692 4.26359 4.38955 4.51907 4.57687 4.63794 4.70688 4.76970 4.79555 4.83658 4.89391 4.90638 4.95809 5.06933 5.09644 5.10866 5.24952 5.27514 5.39476 5.51684 5.54588 5.58307 5.65324 5.84622 5.84931 6.06011 6.26263 6.37219 6.40967 6.68444 7.17387 7.29432 7.33986 7.49856 8.83216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.003507 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.729674 B = 7982.814669 C = 9417.129532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.135 0.865 4 C 0.482 3.518 5 O -0.569 6.569 6 N -0.607 5.607 7 C 0.088 3.912 8 C -0.126 4.126 9 C -0.104 4.104 10 C -0.113 4.113 11 H 0.109 0.891 12 C 0.521 3.479 13 N -0.831 5.831 14 O -0.596 6.596 15 C 0.130 3.870 16 N -0.483 5.483 17 C 0.033 3.967 18 C -0.108 4.108 19 C 0.239 3.761 20 O -0.594 6.594 21 C -0.553 4.553 22 H 0.041 0.959 23 C 0.028 3.972 24 N -0.912 5.912 25 Si 0.955 3.045 26 H -0.282 1.282 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.052 3.948 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.419 0.581 40 H 0.408 0.592 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.372 0.628 48 H 0.269 0.731 49 H 0.069 0.931 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 19.859 -20.547 29.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 H 0.152 0.848 4 C 0.270 3.730 5 O -0.448 6.448 6 N -0.341 5.341 7 C -0.033 4.033 8 C -0.164 4.164 9 C -0.142 4.142 10 C -0.135 4.135 11 H 0.126 0.874 12 C 0.306 3.694 13 N -0.395 5.395 14 O -0.477 6.477 15 C 0.006 3.994 16 N -0.206 5.206 17 C -0.095 4.095 18 C -0.147 4.147 19 C 0.199 3.801 20 O -0.403 6.403 21 C -0.592 4.592 22 H 0.059 0.941 23 C -0.172 4.172 24 N -0.552 5.552 25 Si 0.780 3.220 26 H -0.208 1.208 27 H -0.197 1.197 28 H -0.196 1.196 29 C -0.075 4.075 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.239 0.761 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.221 0.779 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.837 19.600 -19.977 29.348 hybrid contribution 1.164 -2.525 -0.855 2.909 sum -7.674 17.075 -20.832 28.007 Atomic orbital electron populations 1.21838 0.90121 1.02684 1.04751 1.22389 0.99109 0.99831 0.84816 0.84787 1.22506 0.76961 0.87495 0.85989 1.90762 1.52611 1.17398 1.84018 1.48408 1.61597 1.12923 1.11154 1.22271 1.00495 0.78921 1.01636 1.21938 0.98166 1.03928 0.92322 1.21586 1.02463 0.89809 1.00335 1.21695 0.99968 1.00792 0.91078 0.87351 1.20762 0.84797 0.77437 0.86396 1.43658 1.23694 1.63118 1.09014 1.90775 1.23148 1.46687 1.87081 1.21209 0.95602 0.98127 0.84488 1.65838 1.04087 1.18448 1.32230 1.23171 0.89763 0.98162 0.98411 1.22563 0.99647 0.95398 0.97044 1.19413 0.89186 0.91783 0.79677 1.86112 1.54551 1.80188 1.19402 1.21881 1.25778 0.96567 1.14962 0.94089 1.25645 0.94163 1.02549 0.94846 1.69740 1.27765 1.36751 1.20947 0.85679 0.78247 0.80136 0.77939 1.20832 1.19707 1.19561 1.23117 0.97141 0.88437 0.98838 0.94139 0.89254 0.88481 0.87523 0.89955 0.90643 0.86631 0.87787 0.91039 0.74855 0.76058 0.91523 0.93048 0.89529 0.94375 0.93861 0.94708 0.77850 0.92148 0.91311 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.71 71.98 0.63 -2.55 16 2 C 0.05 1.47 2.22 44.17 0.10 1.57 16 3 H 0.13 2.86 6.54 -2.39 -0.02 2.85 16 4 C 0.48 15.80 5.50 87.66 0.48 16.29 16 5 O -0.57 -25.82 11.58 -3.03 -0.04 -25.85 16 6 N -0.61 -14.30 2.97 -818.06 -2.43 -16.73 16 7 C 0.09 1.06 6.09 86.36 0.53 1.58 16 8 C -0.13 -0.74 6.08 30.67 0.19 -0.55 16 9 C -0.10 -0.78 5.07 30.62 0.16 -0.62 16 10 C -0.11 -1.86 2.69 -11.32 -0.03 -1.90 16 11 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 12 C 0.52 10.20 7.43 87.66 0.65 10.85 16 13 N -0.83 -7.64 8.76 -173.54 -1.52 -9.16 16 14 O -0.60 -18.75 16.76 -3.02 -0.05 -18.80 16 15 C 0.13 3.41 5.09 86.51 0.44 3.85 16 16 N -0.48 -19.37 5.50 -860.70 -4.73 -24.10 16 17 C 0.03 1.42 6.11 86.45 0.53 1.95 16 18 C -0.11 -5.70 5.60 31.49 0.18 -5.52 16 19 C 0.24 13.40 1.05 -10.64 -0.01 13.39 16 20 O -0.59 -34.33 12.93 -148.98 -1.93 -36.26 16 21 C -0.55 -33.77 8.07 25.60 0.21 -33.57 16 22 H 0.04 2.58 7.57 -2.91 -0.02 2.55 16 23 C 0.03 1.63 5.04 84.65 0.43 2.06 16 24 N -0.91 -53.23 10.83 21.45 0.23 -53.00 16 25 Si 0.95 46.97 29.54 68.60 2.03 49.00 16 26 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 29 C 0.05 2.53 3.99 86.45 0.34 2.87 16 30 H 0.04 1.19 6.56 -2.39 -0.02 1.17 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.10 1.46 7.56 -2.38 -0.02 1.44 16 33 H 0.11 1.00 5.04 -2.39 -0.01 0.99 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.10 0.14 7.53 -2.39 -0.02 0.12 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.42 0.68 8.23 -92.71 -0.76 -0.08 16 40 H 0.41 3.30 8.93 -92.71 -0.83 2.47 16 41 H 0.07 1.82 7.97 -2.38 -0.02 1.80 16 42 H 0.05 1.86 7.00 -2.39 -0.02 1.85 16 43 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.04 1.78 5.27 -2.39 -0.01 1.77 16 45 H 0.04 2.29 7.98 -2.39 -0.02 2.27 16 46 H 0.03 2.02 7.33 -2.39 -0.02 2.00 16 47 H 0.37 21.81 7.21 -74.06 -0.53 21.28 16 48 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 49 H 0.07 3.59 4.79 -2.39 -0.01 3.58 16 50 H 0.06 2.96 7.53 -2.39 -0.02 2.95 16 Total: -1.00 -86.34 377.29 -4.75 -91.09 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -1.13 Total: 34.11 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.81 Total: 9.70 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -8.44 Total: -102.98 kcal Atomic # 8 Polarization: -78.90 SS G_CDS: -2.01 Total: -80.91 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -86.34 -4.75 -91.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.206 kcal (2) G-P(sol) polarization free energy of solvation -86.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds