Wall clock time and date at job start Tue Mar 31 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.50701 * 109.46755 * 240.00028 * 2 1 3 5 5 O 1.21282 * 119.99741 * 263.39741 * 4 2 1 6 6 N 1.34770 * 120.00211 * 83.39961 * 4 2 1 7 7 C 1.46934 * 120.62835 * 4.91627 * 6 4 2 8 8 C 1.53191 * 108.77622 * 126.36974 * 7 6 4 9 9 C 1.53042 * 109.31672 * 54.63132 * 8 7 6 10 10 C 1.53048 * 109.53685 * 298.63815 * 9 8 7 11 11 H 1.08995 * 109.49726 * 301.41175 * 10 9 8 12 12 C 1.50702 * 109.49747 * 181.34431 * 10 9 8 13 13 N 1.34782 * 119.99598 * 59.99961 * 12 10 9 14 14 O 1.21277 * 120.00106 * 240.00122 * 12 10 9 15 15 C 1.46920 * 120.63464 * 184.63168 * 6 4 2 16 16 N 1.46903 * 109.47381 * 120.00023 * 2 1 3 17 17 C 1.48531 * 110.99986 * 177.60597 * 16 2 1 18 18 C 1.54938 * 103.22730 * 159.72127 * 17 16 2 19 19 C 1.54597 * 102.91745 * 322.58239 * 18 17 16 20 20 O 1.42897 * 110.30609 * 263.04145 * 19 18 17 21 21 C 1.50704 * 110.30451 * 140.87559 * 19 18 17 22 22 H 1.07997 * 120.00334 * 1.55707 * 21 19 18 23 23 C 1.37876 * 119.99784 * 181.55470 * 21 19 18 24 24 N 1.31511 * 120.00310 * 187.16211 * 23 21 19 25 25 Si 1.86802 * 120.00029 * 7.16272 * 23 21 19 26 26 H 1.48501 * 109.47365 * 94.50475 * 25 23 21 27 27 H 1.48496 * 109.47123 * 214.50516 * 25 23 21 28 28 H 1.48501 * 109.47203 * 334.50327 * 25 23 21 29 29 C 1.47900 * 110.99841 * 294.99909 * 16 2 1 30 30 H 1.08994 * 109.47138 * 55.31692 * 1 2 3 31 31 H 1.08999 * 109.47004 * 175.32421 * 1 2 3 32 32 H 1.09000 * 109.46787 * 295.31620 * 1 2 3 33 33 H 1.09003 * 109.57992 * 246.15547 * 7 6 4 34 34 H 1.09000 * 109.58842 * 6.57985 * 7 6 4 35 35 H 1.08996 * 109.49722 * 174.58789 * 8 7 6 36 36 H 1.09005 * 109.49468 * 294.64873 * 8 7 6 37 37 H 1.09004 * 109.45854 * 58.65186 * 9 8 7 38 38 H 1.08993 * 109.46262 * 178.63214 * 9 8 7 39 39 H 0.96998 * 120.00131 * 359.97438 * 13 12 10 40 40 H 0.96992 * 119.99940 * 180.02562 * 13 12 10 41 41 H 1.09004 * 109.58673 * 353.42234 * 15 6 4 42 42 H 1.09000 * 109.59058 * 113.84154 * 15 6 4 43 43 H 1.09001 * 110.66016 * 278.15375 * 17 16 2 44 44 H 1.08996 * 110.66966 * 41.28021 * 17 16 2 45 45 H 1.09000 * 110.72263 * 204.22551 * 18 17 16 46 46 H 1.09003 * 110.72407 * 80.94317 * 18 17 16 47 47 H 0.96711 * 114.00094 * 295.71496 * 20 19 18 48 48 H 0.97001 * 120.00519 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.91730 * 333.50715 * 29 16 2 50 50 H 1.09005 * 109.91916 * 94.80167 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3483 -1.8798 -1.1691 6 7 2.1304 -0.0464 -2.3992 7 6 1.8545 1.3952 -2.4665 8 6 3.0544 2.0974 -3.1100 9 6 3.3528 1.4506 -4.4645 10 6 3.7083 -0.0240 -4.2604 11 1 4.5721 -0.1019 -3.6002 12 6 4.0340 -0.6517 -5.5912 13 7 5.0524 -0.1710 -6.3318 14 8 3.3798 -1.5893 -5.9957 15 6 2.5212 -0.7489 -3.6289 16 7 2.0198 -0.6925 1.1994 17 6 3.5034 -0.7626 1.2051 18 6 3.8409 -1.0122 2.6965 19 6 2.7916 -0.1515 3.4370 20 8 3.3533 1.1111 3.8007 21 6 2.2914 -0.8748 4.6608 22 1 2.6924 -1.8443 4.9167 23 6 1.3218 -0.2987 5.4539 24 7 0.9859 -0.8604 6.5946 25 14 0.4851 1.2798 4.9081 26 1 -0.7776 0.9512 4.1989 27 1 0.1818 2.1160 6.0972 28 1 1.3860 2.0272 3.9942 29 6 1.6463 0.0442 2.4263 30 1 -0.3633 0.5847 -0.8450 31 1 -0.3633 -1.0242 -0.0838 32 1 -0.3633 0.4395 0.9290 33 1 0.9631 1.5688 -3.0692 34 1 1.6995 1.7850 -1.4604 35 1 2.8241 3.1530 -3.2536 36 1 3.9243 1.9999 -2.4603 37 1 2.4739 1.5269 -5.1048 38 1 4.1909 1.9641 -4.9355 39 1 5.5754 0.5791 -6.0084 40 1 5.2618 -0.5748 -7.1884 41 1 2.8059 -1.7736 -3.3896 42 1 1.6854 -0.7538 -4.3284 43 1 3.8516 -1.5910 0.5881 44 1 3.9344 0.1791 0.8654 45 1 4.8505 -0.6713 2.9258 46 1 3.7220 -2.0662 2.9478 47 1 4.0800 1.0501 4.4359 48 1 0.3040 -0.4549 7.1527 49 1 1.5268 1.1039 2.2013 50 1 0.7189 -0.3586 2.8336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:50 Heat of formation + Delta-G solvation = -103.028045 kcal Electronic energy + Delta-G solvation = -31602.696952 eV Core-core repulsion = 27437.152630 eV Total energy + Delta-G solvation = -4165.544322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89675 -39.82083 -38.46346 -37.16191 -35.21622 -34.28882 -33.17545 -32.33741 -32.08626 -31.40290 -28.47508 -28.14737 -26.04843 -25.11327 -24.47610 -22.80129 -21.94350 -21.16442 -20.21665 -19.44513 -18.97654 -17.93045 -17.36943 -17.07401 -17.01233 -16.21258 -15.65292 -15.28313 -15.21106 -14.92309 -14.80171 -14.53164 -14.20933 -14.01824 -13.79987 -13.37740 -13.35466 -13.19033 -12.86864 -12.78319 -12.63411 -12.18623 -12.07813 -11.88808 -11.74654 -11.59872 -11.48870 -11.38244 -11.33364 -11.04596 -10.86040 -10.70007 -10.44013 -10.25530 -10.11904 -10.04414 -9.99107 -9.46017 -8.96192 -8.80116 -8.64930 -8.36449 -7.86068 -6.13636 -4.21717 2.22903 2.62228 2.72842 3.21714 3.31645 3.42172 3.59931 4.12356 4.25552 4.32570 4.34584 4.46951 4.54934 4.59687 4.70726 4.90900 4.98557 5.10127 5.15184 5.16035 5.22578 5.35466 5.38897 5.42489 5.47171 5.56100 5.59599 5.73484 5.75922 5.78671 5.83513 5.90558 6.00157 6.15383 6.22927 6.30678 6.33636 6.34714 6.57860 6.69855 6.86227 6.94435 7.12140 7.22509 7.40232 7.56669 7.62691 7.83784 8.26438 8.29098 8.84832 8.99949 9.50572 10.97287 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002887 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.737507 B = 9695.143214 C = 9889.953761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.059 0.941 4 C 0.524 3.476 5 O -0.511 6.511 6 N -0.619 5.619 7 C 0.100 3.900 8 C -0.135 4.135 9 C -0.109 4.109 10 C -0.125 4.125 11 H 0.104 0.896 12 C 0.527 3.473 13 N -0.855 5.855 14 O -0.538 6.538 15 C 0.133 3.867 16 N -0.488 5.488 17 C 0.037 3.963 18 C -0.132 4.132 19 C 0.213 3.787 20 O -0.582 6.582 21 C -0.542 4.542 22 H 0.077 0.923 23 C 0.084 3.916 24 N -0.889 5.889 25 Si 0.866 3.134 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.227 1.227 29 C 0.049 3.951 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.402 0.598 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.030 0.970 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.364 0.636 48 H 0.265 0.735 49 H 0.038 0.962 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 10.061 -24.541 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.076 0.924 4 C 0.312 3.688 5 O -0.384 6.384 6 N -0.355 5.355 7 C -0.023 4.023 8 C -0.173 4.173 9 C -0.147 4.147 10 C -0.147 4.147 11 H 0.122 0.878 12 C 0.311 3.689 13 N -0.419 5.419 14 O -0.414 6.414 15 C 0.010 3.990 16 N -0.214 5.214 17 C -0.091 4.091 18 C -0.171 4.171 19 C 0.173 3.827 20 O -0.388 6.388 21 C -0.580 4.580 22 H 0.095 0.905 23 C -0.120 4.120 24 N -0.526 5.526 25 Si 0.693 3.307 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.150 1.150 29 C -0.078 4.078 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.232 0.768 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.211 0.789 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.137 8.501 -24.853 26.765 hybrid contribution 0.609 1.706 -0.025 1.811 sum 5.745 10.207 -24.879 27.498 Atomic orbital electron populations 1.21754 0.91951 1.03595 1.02488 1.21873 0.97689 0.95704 0.90255 0.92359 1.20631 0.77156 0.87324 0.83689 1.90699 1.47187 1.16246 1.84222 1.48129 1.69847 1.09192 1.08326 1.21877 0.97672 0.80096 1.02674 1.21935 0.99184 0.99882 0.96312 1.21519 1.02374 0.92630 0.98147 1.21636 1.01594 0.96953 0.94561 0.87840 1.20467 0.79524 0.82794 0.86134 1.43870 1.35453 1.38269 1.24324 1.90780 1.50282 1.28088 1.72222 1.21160 0.95427 0.97216 0.85239 1.64742 1.10333 1.46652 0.99661 1.23232 0.87662 0.99420 0.98738 1.23050 0.98699 1.02133 0.93194 1.19809 0.88872 0.81134 0.92868 1.86461 1.53616 1.33083 1.65643 1.21367 1.23107 1.05999 1.07498 0.90452 1.24999 0.95930 0.97020 0.94064 1.69950 1.31085 1.40376 1.11203 0.87143 0.79724 0.84558 0.79238 1.21299 1.22332 1.14963 1.23338 1.00365 0.94977 0.89129 0.92187 0.90913 0.90963 0.91009 0.89025 0.89923 0.90954 0.90920 0.91108 0.77024 0.76756 0.88188 0.90676 0.90145 0.95163 0.92123 0.90328 0.78887 0.92576 0.94404 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.24 37.16 0.34 -1.66 16 2 C 0.06 0.90 1.40 -68.86 -0.10 0.80 16 3 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 4 C 0.52 8.14 6.19 -10.99 -0.07 8.08 16 5 O -0.51 -9.91 14.61 5.56 0.08 -9.83 16 6 N -0.62 -7.15 2.98 -173.03 -0.52 -7.67 16 7 C 0.10 0.81 6.16 -3.71 -0.02 0.78 16 8 C -0.13 -0.79 6.08 -26.61 -0.16 -0.96 16 9 C -0.11 -0.58 5.08 -26.68 -0.14 -0.72 16 10 C -0.13 -1.00 2.66 -91.87 -0.24 -1.24 16 11 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.53 4.66 7.43 -10.98 -0.08 4.58 16 13 N -0.86 -4.04 8.76 31.22 0.27 -3.77 16 14 O -0.54 -7.23 16.76 5.56 0.09 -7.14 16 15 C 0.13 1.49 5.06 -3.94 -0.02 1.47 16 16 N -0.49 -9.66 4.83 -223.89 -1.08 -10.74 16 17 C 0.04 0.70 5.60 -1.90 -0.01 0.69 16 18 C -0.13 -2.71 6.34 -24.87 -0.16 -2.87 16 19 C 0.21 4.92 0.84 -90.42 -0.08 4.84 16 20 O -0.58 -12.83 10.33 -35.23 -0.36 -13.20 16 21 C -0.54 -14.93 8.65 -34.44 -0.30 -15.23 16 22 H 0.08 2.33 7.80 -52.49 -0.41 1.92 16 23 C 0.08 2.39 5.40 -17.82 -0.10 2.29 16 24 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 25 Si 0.87 21.32 24.26 -169.99 -4.12 17.20 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.23 -5.38 4.73 56.52 0.27 -5.11 16 29 C 0.05 1.07 2.94 -2.76 -0.01 1.06 16 30 H 0.06 0.66 7.98 -51.93 -0.41 0.24 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.09 7.18 -51.93 -0.37 0.72 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.77 5.40 -51.93 -0.28 0.49 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.23 7.53 -51.93 -0.39 -0.16 16 39 H 0.40 0.76 8.23 -40.82 -0.34 0.42 16 40 H 0.40 1.59 8.93 -40.82 -0.36 1.22 16 41 H 0.10 1.41 7.00 -51.93 -0.36 1.05 16 42 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 43 H 0.08 1.55 6.96 -51.93 -0.36 1.18 16 44 H 0.03 0.53 8.02 -51.93 -0.42 0.12 16 45 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 46 H 0.08 1.71 7.69 -51.93 -0.40 1.32 16 47 H 0.36 7.05 9.07 45.56 0.41 7.46 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.04 0.80 6.35 -51.93 -0.33 0.47 16 50 H 0.09 2.16 6.03 -51.93 -0.31 1.85 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -36.44 377.78 -7.59 -44.03 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.28 Total: 9.62 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.13 Total: 1.93 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.55 Total: -48.31 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.19 Total: -30.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.12 Total: 17.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.44 -7.59 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.001 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds