Wall clock time and date at job start Tue Mar 31 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.50701 * 109.46755 * 240.00028 * 2 1 3 5 5 O 1.21282 * 119.99741 * 263.39741 * 4 2 1 6 6 N 1.34770 * 120.00211 * 83.39961 * 4 2 1 7 7 C 1.46934 * 120.62835 * 4.91627 * 6 4 2 8 8 C 1.53191 * 108.77622 * 126.36974 * 7 6 4 9 9 C 1.53042 * 109.31672 * 54.63132 * 8 7 6 10 10 C 1.53048 * 109.53685 * 298.63815 * 9 8 7 11 11 H 1.08995 * 109.49726 * 301.41175 * 10 9 8 12 12 C 1.50702 * 109.49747 * 181.34431 * 10 9 8 13 13 N 1.34782 * 119.99598 * 59.99961 * 12 10 9 14 14 O 1.21277 * 120.00106 * 240.00122 * 12 10 9 15 15 C 1.46920 * 120.63464 * 184.63168 * 6 4 2 16 16 N 1.46903 * 109.47381 * 120.00023 * 2 1 3 17 17 C 1.48531 * 110.99986 * 177.60597 * 16 2 1 18 18 C 1.54938 * 103.22730 * 159.72127 * 17 16 2 19 19 C 1.54597 * 102.91745 * 322.58239 * 18 17 16 20 20 O 1.42897 * 110.30609 * 263.04145 * 19 18 17 21 21 C 1.50704 * 110.30451 * 140.87559 * 19 18 17 22 22 H 1.07997 * 120.00334 * 1.55707 * 21 19 18 23 23 C 1.37876 * 119.99784 * 181.55470 * 21 19 18 24 24 N 1.31511 * 120.00310 * 187.16211 * 23 21 19 25 25 Si 1.86802 * 120.00029 * 7.16272 * 23 21 19 26 26 H 1.48501 * 109.47365 * 94.50475 * 25 23 21 27 27 H 1.48496 * 109.47123 * 214.50516 * 25 23 21 28 28 H 1.48501 * 109.47203 * 334.50327 * 25 23 21 29 29 C 1.47900 * 110.99841 * 294.99909 * 16 2 1 30 30 H 1.08994 * 109.47138 * 55.31692 * 1 2 3 31 31 H 1.08999 * 109.47004 * 175.32421 * 1 2 3 32 32 H 1.09000 * 109.46787 * 295.31620 * 1 2 3 33 33 H 1.09003 * 109.57992 * 246.15547 * 7 6 4 34 34 H 1.09000 * 109.58842 * 6.57985 * 7 6 4 35 35 H 1.08996 * 109.49722 * 174.58789 * 8 7 6 36 36 H 1.09005 * 109.49468 * 294.64873 * 8 7 6 37 37 H 1.09004 * 109.45854 * 58.65186 * 9 8 7 38 38 H 1.08993 * 109.46262 * 178.63214 * 9 8 7 39 39 H 0.96998 * 120.00131 * 359.97438 * 13 12 10 40 40 H 0.96992 * 119.99940 * 180.02562 * 13 12 10 41 41 H 1.09004 * 109.58673 * 353.42234 * 15 6 4 42 42 H 1.09000 * 109.59058 * 113.84154 * 15 6 4 43 43 H 1.09001 * 110.66016 * 278.15375 * 17 16 2 44 44 H 1.08996 * 110.66966 * 41.28021 * 17 16 2 45 45 H 1.09000 * 110.72263 * 204.22551 * 18 17 16 46 46 H 1.09003 * 110.72407 * 80.94317 * 18 17 16 47 47 H 0.96711 * 114.00094 * 295.71496 * 20 19 18 48 48 H 0.97001 * 120.00519 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.91730 * 333.50715 * 29 16 2 50 50 H 1.09005 * 109.91916 * 94.80167 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3483 -1.8798 -1.1691 6 7 2.1304 -0.0464 -2.3992 7 6 1.8545 1.3952 -2.4665 8 6 3.0544 2.0974 -3.1100 9 6 3.3528 1.4506 -4.4645 10 6 3.7083 -0.0240 -4.2604 11 1 4.5721 -0.1019 -3.6002 12 6 4.0340 -0.6517 -5.5912 13 7 5.0524 -0.1710 -6.3318 14 8 3.3798 -1.5893 -5.9957 15 6 2.5212 -0.7489 -3.6289 16 7 2.0198 -0.6925 1.1994 17 6 3.5034 -0.7626 1.2051 18 6 3.8409 -1.0122 2.6965 19 6 2.7916 -0.1515 3.4370 20 8 3.3533 1.1111 3.8007 21 6 2.2914 -0.8748 4.6608 22 1 2.6924 -1.8443 4.9167 23 6 1.3218 -0.2987 5.4539 24 7 0.9859 -0.8604 6.5946 25 14 0.4851 1.2798 4.9081 26 1 -0.7776 0.9512 4.1989 27 1 0.1818 2.1160 6.0972 28 1 1.3860 2.0272 3.9942 29 6 1.6463 0.0442 2.4263 30 1 -0.3633 0.5847 -0.8450 31 1 -0.3633 -1.0242 -0.0838 32 1 -0.3633 0.4395 0.9290 33 1 0.9631 1.5688 -3.0692 34 1 1.6995 1.7850 -1.4604 35 1 2.8241 3.1530 -3.2536 36 1 3.9243 1.9999 -2.4603 37 1 2.4739 1.5269 -5.1048 38 1 4.1909 1.9641 -4.9355 39 1 5.5754 0.5791 -6.0084 40 1 5.2618 -0.5748 -7.1884 41 1 2.8059 -1.7736 -3.3896 42 1 1.6854 -0.7538 -4.3284 43 1 3.8516 -1.5910 0.5881 44 1 3.9344 0.1791 0.8654 45 1 4.8505 -0.6713 2.9258 46 1 3.7220 -2.0662 2.9478 47 1 4.0800 1.0501 4.4359 48 1 0.3040 -0.4549 7.1527 49 1 1.5268 1.1039 2.2013 50 1 0.7189 -0.3586 2.8336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:49 Heat of formation + Delta-G solvation = -136.478234 kcal Electronic energy + Delta-G solvation = -31604.147461 eV Core-core repulsion = 27437.152630 eV Total energy + Delta-G solvation = -4166.994831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85249 -40.82846 -39.85934 -38.13145 -36.79970 -35.00458 -34.46426 -34.14030 -33.17625 -32.17961 -30.26664 -29.64689 -27.12284 -26.32186 -25.61268 -24.05350 -22.87695 -22.37630 -21.24909 -20.92602 -19.94916 -19.08720 -18.72958 -18.23080 -17.76681 -17.50679 -16.99671 -16.58038 -16.37174 -16.08778 -15.92637 -15.51990 -15.35558 -15.16270 -14.89982 -14.69665 -14.59945 -14.40925 -14.20672 -14.02867 -13.71269 -13.65681 -13.50806 -13.22868 -13.20707 -12.86550 -12.58498 -12.46579 -12.41718 -12.13593 -12.07684 -11.96238 -11.91500 -11.77882 -11.65542 -10.99859 -10.96593 -10.79824 -10.68579 -10.63116 -10.23765 -9.72248 -9.32885 -8.33611 -6.46013 1.37221 1.41768 1.51866 1.56634 1.64449 1.74420 2.40350 2.61576 2.92839 3.02403 3.34943 3.58114 3.62018 3.76934 3.78156 3.90997 3.98684 4.03724 4.12200 4.20682 4.22197 4.24991 4.32371 4.39270 4.51668 4.59209 4.60342 4.71327 4.71877 4.80345 4.85172 4.88753 4.91338 5.03348 5.06032 5.07680 5.16130 5.26819 5.35311 5.35995 5.47163 5.59900 5.87009 5.87212 5.99807 6.11970 6.33896 6.41552 6.64110 7.14024 7.17502 7.30849 7.34561 8.81216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002887 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.737507 B = 9695.143214 C = 9889.953761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.087 0.913 4 C 0.523 3.477 5 O -0.563 6.563 6 N -0.607 5.607 7 C 0.087 3.913 8 C -0.129 4.129 9 C -0.103 4.103 10 C -0.116 4.116 11 H 0.107 0.893 12 C 0.525 3.475 13 N -0.832 5.832 14 O -0.593 6.593 15 C 0.133 3.867 16 N -0.512 5.512 17 C 0.051 3.949 18 C -0.131 4.131 19 C 0.213 3.787 20 O -0.578 6.578 21 C -0.546 4.546 22 H 0.032 0.968 23 C 0.029 3.971 24 N -0.940 5.940 25 Si 0.932 3.068 26 H -0.279 1.279 27 H -0.301 1.301 28 H -0.204 1.204 29 C 0.059 3.941 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.419 0.581 40 H 0.408 0.592 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.377 0.623 48 H 0.266 0.734 49 H 0.053 0.947 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 14.359 -27.467 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 H 0.104 0.896 4 C 0.311 3.689 5 O -0.440 6.440 6 N -0.340 5.340 7 C -0.034 4.034 8 C -0.167 4.167 9 C -0.141 4.141 10 C -0.139 4.139 11 H 0.125 0.875 12 C 0.310 3.690 13 N -0.396 5.396 14 O -0.473 6.473 15 C 0.009 3.991 16 N -0.238 5.238 17 C -0.077 4.077 18 C -0.169 4.169 19 C 0.173 3.827 20 O -0.385 6.385 21 C -0.584 4.584 22 H 0.050 0.950 23 C -0.170 4.170 24 N -0.579 5.579 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.228 1.228 28 H -0.126 1.126 29 C -0.068 4.068 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.251 0.749 40 H 0.240 0.760 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.225 0.775 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.964 12.877 -27.831 31.240 hybrid contribution 0.447 0.295 0.844 1.000 sum 6.411 13.173 -26.987 30.707 Atomic orbital electron populations 1.21771 0.90974 1.03011 1.03796 1.21991 0.98484 0.96564 0.88587 0.89574 1.20627 0.76900 0.86707 0.84685 1.90686 1.49810 1.18412 1.85135 1.48136 1.68138 1.10710 1.07047 1.22274 0.99887 0.77567 1.03671 1.21938 0.97781 1.01084 0.95912 1.21564 1.03823 0.90309 0.98405 1.21547 1.00061 0.98460 0.93784 0.87459 1.20637 0.79743 0.82130 0.86523 1.43676 1.33937 1.38035 1.23929 1.90766 1.52511 1.30562 1.73508 1.21086 0.96941 0.95983 0.85045 1.64603 1.10936 1.47811 1.00494 1.23084 0.87385 1.00222 0.96961 1.22973 0.99348 1.00189 0.94377 1.19672 0.90163 0.81506 0.91402 1.86394 1.54214 1.31853 1.66084 1.21623 1.22805 1.04612 1.09316 0.95014 1.25869 0.96592 1.00718 0.93858 1.70093 1.32330 1.42614 1.12846 0.86129 0.79083 0.80259 0.78883 1.20542 1.22813 1.12629 1.23009 0.98473 0.95727 0.89639 0.88381 0.92980 0.91599 0.89014 0.88735 0.87045 0.91339 0.90605 0.87973 0.74948 0.75996 0.92008 0.90836 0.90869 0.92869 0.89795 0.92943 0.77489 0.92499 0.92870 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.24 71.98 0.66 -3.00 16 2 C 0.06 1.63 1.40 44.17 0.06 1.69 16 3 H 0.09 2.09 5.94 -2.39 -0.01 2.08 16 4 C 0.52 15.73 6.19 87.66 0.54 16.27 16 5 O -0.56 -22.41 14.61 -3.04 -0.04 -22.46 16 6 N -0.61 -12.83 2.98 -819.73 -2.44 -15.27 16 7 C 0.09 1.05 6.16 86.36 0.53 1.58 16 8 C -0.13 -0.87 6.08 30.67 0.19 -0.68 16 9 C -0.10 -0.65 5.08 30.62 0.16 -0.49 16 10 C -0.12 -1.60 2.66 -11.60 -0.03 -1.63 16 11 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 12 C 0.52 8.51 7.43 87.66 0.65 9.16 16 13 N -0.83 -5.60 8.76 -173.53 -1.52 -7.12 16 14 O -0.59 -16.03 16.76 -3.02 -0.05 -16.08 16 15 C 0.13 2.91 5.06 86.22 0.44 3.34 16 16 N -0.51 -19.81 4.83 -862.24 -4.17 -23.98 16 17 C 0.05 1.85 5.60 86.65 0.49 2.34 16 18 C -0.13 -5.32 6.34 31.80 0.20 -5.11 16 19 C 0.21 9.68 0.84 -10.66 -0.01 9.67 16 20 O -0.58 -23.98 10.33 -148.98 -1.54 -25.52 16 21 C -0.55 -30.96 8.65 25.60 0.22 -30.74 16 22 H 0.03 2.03 7.80 -2.91 -0.02 2.01 16 23 C 0.03 1.68 5.40 84.65 0.46 2.13 16 24 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 25 Si 0.93 43.94 24.26 68.60 1.66 45.61 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.20 -8.83 4.73 99.48 0.47 -8.36 16 29 C 0.06 2.50 2.94 86.44 0.25 2.75 16 30 H 0.10 1.81 7.98 -2.39 -0.02 1.79 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.84 7.18 -2.39 -0.02 1.83 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.12 5.40 -2.39 -0.01 1.10 16 35 H 0.11 0.22 8.14 -2.39 -0.02 0.21 16 36 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.10 0.07 7.53 -2.39 -0.02 0.05 16 39 H 0.42 -0.05 8.23 -92.71 -0.76 -0.81 16 40 H 0.41 2.27 8.93 -92.71 -0.83 1.44 16 41 H 0.06 1.85 7.00 -2.38 -0.02 1.83 16 42 H 0.07 1.62 7.94 -2.39 -0.02 1.60 16 43 H 0.07 2.81 6.96 -2.39 -0.02 2.79 16 44 H 0.05 1.70 8.02 -2.39 -0.02 1.68 16 45 H 0.08 2.96 8.08 -2.39 -0.02 2.94 16 46 H 0.05 2.38 7.69 -2.39 -0.02 2.36 16 47 H 0.38 13.73 9.07 -74.05 -0.67 13.05 16 48 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.05 2.07 6.35 -2.39 -0.02 2.05 16 50 H 0.06 3.04 6.03 -2.38 -0.01 3.03 16 Total: -1.00 -84.89 377.78 -4.50 -89.39 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -1.51 Total: 26.66 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 4.81 Total: 7.29 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -7.83 Total: -104.89 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -1.63 Total: -64.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.66 Total: 45.61 kcal Total: -84.89 -4.50 -89.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.090 kcal (2) G-P(sol) polarization free energy of solvation -84.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds