Wall clock time and date at job start Tue Mar 31 2020 22:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50706 * 109.47116 * 240.00064 * 2 1 3 5 5 O 1.21279 * 120.00160 * 256.82171 * 4 2 1 6 6 N 1.34780 * 119.99675 * 76.54839 * 4 2 1 7 7 C 1.46496 * 120.00164 * 355.46315 * 6 4 2 8 8 C 1.46495 * 119.99555 * 175.45829 * 6 4 2 9 9 C 1.50695 * 109.47046 * 90.00509 * 8 6 4 10 10 H 1.07997 * 120.00407 * 359.97438 * 9 8 6 11 11 C 1.37887 * 120.00274 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99989 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99535 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47216 * 90.00500 * 13 11 9 15 15 H 1.48507 * 109.46954 * 209.99992 * 13 11 9 16 16 H 1.48504 * 109.47427 * 330.00154 * 13 11 9 17 17 N 1.46904 * 109.47028 * 120.00317 * 2 1 3 18 18 C 1.46843 * 111.00107 * 59.21038 * 17 2 1 19 19 C 1.53041 * 109.52347 * 174.15889 * 18 17 2 20 20 C 1.53120 * 109.27535 * 59.17780 * 19 18 17 21 21 N 1.46496 * 109.52013 * 182.43878 * 20 19 18 22 22 C 1.47097 * 125.55963 * 239.68273 * 21 20 19 23 23 C 1.54098 * 103.77554 * 179.97438 * 22 21 20 24 24 O 1.45698 * 104.00637 * 359.97438 * 23 22 21 25 25 C 1.33772 * 109.47731 * 359.75745 * 24 23 22 26 26 O 1.21517 * 123.06833 * 180.23806 * 25 24 23 27 27 C 1.53117 * 109.16372 * 302.34727 * 20 19 18 28 28 C 1.46847 * 111.00038 * 294.99800 * 17 2 1 29 29 H 1.09003 * 109.47178 * 188.03047 * 1 2 3 30 30 H 1.08996 * 109.47371 * 308.03286 * 1 2 3 31 31 H 1.09001 * 109.47630 * 68.03145 * 1 2 3 32 32 H 1.09002 * 109.47260 * 95.64143 * 7 6 4 33 33 H 1.08990 * 109.47207 * 215.64277 * 7 6 4 34 34 H 1.09005 * 109.47238 * 335.64503 * 7 6 4 35 35 H 1.09007 * 109.46938 * 210.00016 * 8 6 4 36 36 H 1.09000 * 109.47436 * 329.99928 * 8 6 4 37 37 H 0.96998 * 119.99325 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.46049 * 294.17717 * 18 17 2 39 39 H 1.09003 * 109.46270 * 54.14319 * 18 17 2 40 40 H 1.09003 * 109.50245 * 299.23771 * 19 18 17 41 41 H 1.09003 * 109.50148 * 179.12125 * 19 18 17 42 42 H 1.09009 * 109.52137 * 62.25267 * 20 19 18 43 43 H 1.08995 * 110.56874 * 298.55413 * 22 21 20 44 44 H 1.09002 * 110.56644 * 61.41105 * 22 21 20 45 45 H 1.08995 * 110.51557 * 118.63493 * 23 22 21 46 46 H 1.09003 * 110.51987 * 241.23264 * 23 22 21 47 47 H 1.09003 * 109.50018 * 297.71274 * 27 20 19 48 48 H 1.08991 * 109.50402 * 177.60061 * 27 20 19 49 49 H 1.08996 * 109.46098 * 305.85760 * 28 17 2 50 50 H 1.08997 * 109.45863 * 65.82220 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4602 -1.8420 -1.1452 6 7 2.0009 -0.0902 -2.4267 7 6 1.3880 1.2348 -2.5489 8 6 2.5797 -0.7410 -3.6046 9 6 1.5243 -1.5701 -4.2899 10 1 0.5227 -1.6087 -3.8880 11 6 1.8374 -2.2794 -5.4301 12 7 0.9164 -3.0034 -6.0278 13 14 3.5697 -2.2120 -6.1256 14 1 4.3867 -3.2973 -5.5255 15 1 3.5186 -2.3882 -7.5993 16 1 4.1811 -0.8972 -5.8051 17 7 2.0196 -0.6926 1.1994 18 6 1.5334 -2.0775 1.2428 19 6 2.1776 -2.8090 2.4226 20 6 1.8222 -2.0826 3.7228 21 7 2.4838 -2.7444 4.8499 22 6 1.8042 -3.3461 6.0074 23 6 2.9598 -3.8903 6.8694 24 8 4.1567 -3.5424 6.1148 25 6 3.8064 -2.9064 4.9913 26 8 4.6142 -2.5082 4.1755 27 6 2.2964 -0.6295 3.6325 28 6 1.6488 0.0388 2.4177 29 1 -0.3634 -1.0176 0.1436 30 1 -0.3634 0.6331 0.8094 31 1 -0.3634 0.3844 -0.9530 32 1 2.1603 2.0006 -2.4754 33 1 0.8868 1.3157 -3.5134 34 1 0.6610 1.3741 -1.7488 35 1 2.9499 0.0180 -4.2939 36 1 3.4037 -1.3844 -3.2961 37 1 1.1367 -3.5020 -6.8301 38 1 0.4500 -2.0785 1.3626 39 1 1.7963 -2.5840 0.3141 40 1 3.2603 -2.8205 2.2963 41 1 1.8046 -3.8324 2.4637 42 1 0.7422 -2.1049 3.8690 43 1 1.2403 -2.5913 6.5553 44 1 1.1499 -4.1574 5.6881 45 1 2.9689 -3.4061 7.8458 46 1 2.8771 -4.9715 6.9808 47 1 3.3809 -0.6067 3.5253 48 1 2.0084 -0.0958 4.5381 49 1 1.9955 1.0693 2.3422 50 1 0.5649 0.0279 2.5320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852723356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:47 Heat of formation + Delta-G solvation = -68.480471 kcal Electronic energy + Delta-G solvation = -31199.620533 eV Core-core repulsion = 27035.574306 eV Total energy + Delta-G solvation = -4164.046227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81941 -40.10627 -38.34387 -37.19618 -35.90788 -34.93267 -33.35342 -32.42453 -30.82776 -30.32213 -29.09969 -28.07231 -26.20526 -25.09044 -23.98804 -23.63373 -23.20447 -21.93790 -20.91100 -19.50809 -18.46822 -17.57793 -17.51943 -16.92907 -16.77164 -16.45875 -16.01957 -15.20959 -14.95751 -14.75106 -14.67379 -14.45343 -14.32295 -14.21273 -14.06724 -13.85531 -13.43300 -13.14414 -12.96315 -12.84127 -12.69054 -12.37379 -12.29517 -12.24646 -11.85804 -11.79201 -11.63258 -11.49611 -11.24400 -11.06227 -10.93153 -10.83488 -10.66963 -10.54414 -10.48435 -10.22933 -10.11508 -9.51515 -9.12714 -8.67944 -8.56458 -8.02864 -7.66278 -6.06868 -4.05130 2.19425 2.61318 3.19892 3.31857 3.33034 3.37958 3.40812 3.62224 3.78135 4.18719 4.23352 4.30197 4.42337 4.70125 4.77216 4.79215 4.90249 4.90602 5.06262 5.08719 5.18877 5.23120 5.26150 5.27804 5.34165 5.42713 5.49608 5.56748 5.60414 5.68060 5.72632 5.85697 5.89078 5.94500 6.09804 6.13916 6.24457 6.28236 6.51805 6.54574 6.72105 6.95475 7.13874 7.21505 7.28809 7.39273 7.63618 7.91521 8.28644 8.49344 8.95190 9.03962 9.53983 11.06537 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002668 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.415138 B =10491.751800 C =11213.424445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.066 3.934 3 H 0.100 0.900 4 C 0.517 3.483 5 O -0.521 6.521 6 N -0.596 5.596 7 C 0.074 3.926 8 C 0.216 3.784 9 C -0.525 4.525 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.266 1.266 17 N -0.514 5.514 18 C 0.031 3.969 19 C -0.128 4.128 20 C 0.179 3.821 21 N -0.628 5.628 22 C 0.064 3.936 23 C 0.041 3.959 24 O -0.333 6.333 25 C 0.639 3.361 26 O -0.507 6.507 27 C -0.130 4.130 28 C 0.060 3.940 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 5.574 26.493 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.118 0.882 4 C 0.303 3.697 5 O -0.398 6.398 6 N -0.328 5.328 7 C -0.070 4.070 8 C 0.096 3.904 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.238 5.238 18 C -0.096 4.096 19 C -0.167 4.167 20 C 0.078 3.922 21 N -0.376 5.376 22 C -0.060 4.060 23 C -0.034 4.034 24 O -0.243 6.243 25 C 0.393 3.607 26 O -0.390 6.390 27 C -0.169 4.169 28 C -0.069 4.069 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.251 4.993 25.984 26.555 hybrid contribution -0.439 0.009 -0.266 0.513 sum -2.689 5.002 25.719 26.338 Atomic orbital electron populations 1.22506 0.95631 1.03301 1.03160 1.21630 0.94060 0.98716 0.90193 0.88230 1.20074 0.79225 0.86529 0.83899 1.90468 1.46737 1.17929 1.84647 1.47781 1.57947 1.18150 1.08947 1.21860 0.97504 0.84336 1.03278 1.19657 0.95093 0.93243 0.82435 1.21306 0.97792 1.27774 1.09525 0.90843 1.24858 0.97049 0.94653 0.96492 1.69897 1.33444 1.30399 1.20014 0.86852 0.85302 0.79300 0.78245 1.19871 1.21138 1.19051 1.61867 1.59527 1.02326 1.00121 1.22805 0.95681 0.88927 1.02187 1.22005 1.04266 0.98175 0.92223 1.21084 0.95577 0.91933 0.83583 1.48297 1.05714 1.60358 1.23275 1.22800 0.96258 0.99409 0.87485 1.24239 0.80854 1.02706 0.95572 1.87296 1.32478 1.71309 1.33247 1.18545 0.83092 0.77868 0.81200 1.91093 1.53833 1.52637 1.41458 1.21986 1.03810 0.93849 0.97208 1.22031 0.97435 0.97901 0.89483 0.91372 0.91896 0.90591 0.93576 0.90686 0.91442 0.95243 0.94567 0.92610 0.95502 0.84713 0.89097 0.91599 0.89338 0.89210 0.89133 0.87808 0.87755 0.89113 0.91612 0.90429 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 8.07 37.15 0.30 -2.05 16 2 C 0.07 0.98 1.93 -68.86 -0.13 0.85 16 3 H 0.10 1.28 7.46 -51.93 -0.39 0.89 16 4 C 0.52 10.47 6.83 -10.98 -0.07 10.40 16 5 O -0.52 -12.68 12.98 5.56 0.07 -12.60 16 6 N -0.60 -12.24 2.86 -182.96 -0.52 -12.77 16 7 C 0.07 1.12 9.87 59.84 0.59 1.71 16 8 C 0.22 5.34 4.22 -5.20 -0.02 5.31 16 9 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 10 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 13 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 14 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 17 N -0.51 -7.58 4.55 -228.09 -1.04 -8.62 16 18 C 0.03 0.48 4.54 -3.83 -0.02 0.46 16 19 C -0.13 -1.77 5.42 -26.65 -0.14 -1.91 16 20 C 0.18 1.89 2.86 -67.81 -0.19 1.70 16 21 N -0.63 -6.26 2.85 -171.08 -0.49 -6.75 16 22 C 0.06 0.32 7.67 -3.14 -0.02 0.30 16 23 C 0.04 0.20 8.23 37.73 0.31 0.51 16 24 O -0.33 -3.71 11.09 -37.83 -0.42 -4.13 16 25 C 0.64 8.58 8.30 53.71 0.45 9.03 16 26 O -0.51 -9.10 14.98 -19.12 -0.29 -9.38 16 27 C -0.13 -1.42 5.43 -26.65 -0.14 -1.57 16 28 C 0.06 0.66 5.03 -3.84 -0.02 0.64 16 29 H 0.07 0.94 6.11 -51.93 -0.32 0.63 16 30 H 0.06 0.61 7.07 -51.93 -0.37 0.25 16 31 H 0.08 0.97 5.88 -51.93 -0.31 0.67 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.07 0.83 4.34 -51.93 -0.23 0.61 16 35 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.04 0.96 6.92 -51.93 -0.36 0.60 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.03 0.37 6.44 -51.93 -0.33 0.03 16 39 H 0.14 2.65 4.76 -52.35 -0.25 2.40 16 40 H 0.09 1.58 6.70 -51.93 -0.35 1.24 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.74 8.10 -51.92 -0.42 0.31 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 1.30 6.77 -51.93 -0.35 0.95 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 50 H 0.03 0.33 6.92 -51.93 -0.36 -0.03 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -37.83 379.43 -8.21 -46.04 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.78 Total: 0.40 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 0.43 Total: 11.94 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -1.28 Total: -55.18 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.63 Total: -26.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.83 -8.21 -46.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852723356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.438 kcal (2) G-P(sol) polarization free energy of solvation -37.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds