Wall clock time and date at job start Tue Mar 31 2020 22:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50706 * 109.47116 * 240.00064 * 2 1 3 5 5 O 1.21279 * 120.00160 * 256.82171 * 4 2 1 6 6 N 1.34780 * 119.99675 * 76.54839 * 4 2 1 7 7 C 1.46496 * 120.00164 * 355.46315 * 6 4 2 8 8 C 1.46495 * 119.99555 * 175.45829 * 6 4 2 9 9 C 1.50695 * 109.47046 * 90.00509 * 8 6 4 10 10 H 1.07997 * 120.00407 * 359.97438 * 9 8 6 11 11 C 1.37887 * 120.00274 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99989 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99535 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47216 * 90.00500 * 13 11 9 15 15 H 1.48507 * 109.46954 * 209.99992 * 13 11 9 16 16 H 1.48504 * 109.47427 * 330.00154 * 13 11 9 17 17 N 1.46904 * 109.47028 * 120.00317 * 2 1 3 18 18 C 1.46843 * 111.00107 * 59.21038 * 17 2 1 19 19 C 1.53041 * 109.52347 * 174.15889 * 18 17 2 20 20 C 1.53120 * 109.27535 * 59.17780 * 19 18 17 21 21 N 1.46496 * 109.52013 * 182.43878 * 20 19 18 22 22 C 1.47097 * 125.55963 * 239.68273 * 21 20 19 23 23 C 1.54098 * 103.77554 * 179.97438 * 22 21 20 24 24 O 1.45698 * 104.00637 * 359.97438 * 23 22 21 25 25 C 1.33772 * 109.47731 * 359.75745 * 24 23 22 26 26 O 1.21517 * 123.06833 * 180.23806 * 25 24 23 27 27 C 1.53117 * 109.16372 * 302.34727 * 20 19 18 28 28 C 1.46847 * 111.00038 * 294.99800 * 17 2 1 29 29 H 1.09003 * 109.47178 * 188.03047 * 1 2 3 30 30 H 1.08996 * 109.47371 * 308.03286 * 1 2 3 31 31 H 1.09001 * 109.47630 * 68.03145 * 1 2 3 32 32 H 1.09002 * 109.47260 * 95.64143 * 7 6 4 33 33 H 1.08990 * 109.47207 * 215.64277 * 7 6 4 34 34 H 1.09005 * 109.47238 * 335.64503 * 7 6 4 35 35 H 1.09007 * 109.46938 * 210.00016 * 8 6 4 36 36 H 1.09000 * 109.47436 * 329.99928 * 8 6 4 37 37 H 0.96998 * 119.99325 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.46049 * 294.17717 * 18 17 2 39 39 H 1.09003 * 109.46270 * 54.14319 * 18 17 2 40 40 H 1.09003 * 109.50245 * 299.23771 * 19 18 17 41 41 H 1.09003 * 109.50148 * 179.12125 * 19 18 17 42 42 H 1.09009 * 109.52137 * 62.25267 * 20 19 18 43 43 H 1.08995 * 110.56874 * 298.55413 * 22 21 20 44 44 H 1.09002 * 110.56644 * 61.41105 * 22 21 20 45 45 H 1.08995 * 110.51557 * 118.63493 * 23 22 21 46 46 H 1.09003 * 110.51987 * 241.23264 * 23 22 21 47 47 H 1.09003 * 109.50018 * 297.71274 * 27 20 19 48 48 H 1.08991 * 109.50402 * 177.60061 * 27 20 19 49 49 H 1.08996 * 109.46098 * 305.85760 * 28 17 2 50 50 H 1.08997 * 109.45863 * 65.82220 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4602 -1.8420 -1.1452 6 7 2.0009 -0.0902 -2.4267 7 6 1.3880 1.2348 -2.5489 8 6 2.5797 -0.7410 -3.6046 9 6 1.5243 -1.5701 -4.2899 10 1 0.5227 -1.6087 -3.8880 11 6 1.8374 -2.2794 -5.4301 12 7 0.9164 -3.0034 -6.0278 13 14 3.5697 -2.2120 -6.1256 14 1 4.3867 -3.2973 -5.5255 15 1 3.5186 -2.3882 -7.5993 16 1 4.1811 -0.8972 -5.8051 17 7 2.0196 -0.6926 1.1994 18 6 1.5334 -2.0775 1.2428 19 6 2.1776 -2.8090 2.4226 20 6 1.8222 -2.0826 3.7228 21 7 2.4838 -2.7444 4.8499 22 6 1.8042 -3.3461 6.0074 23 6 2.9598 -3.8903 6.8694 24 8 4.1567 -3.5424 6.1148 25 6 3.8064 -2.9064 4.9913 26 8 4.6142 -2.5082 4.1755 27 6 2.2964 -0.6295 3.6325 28 6 1.6488 0.0388 2.4177 29 1 -0.3634 -1.0176 0.1436 30 1 -0.3634 0.6331 0.8094 31 1 -0.3634 0.3844 -0.9530 32 1 2.1603 2.0006 -2.4754 33 1 0.8868 1.3157 -3.5134 34 1 0.6610 1.3741 -1.7488 35 1 2.9499 0.0180 -4.2939 36 1 3.4037 -1.3844 -3.2961 37 1 1.1367 -3.5020 -6.8301 38 1 0.4500 -2.0785 1.3626 39 1 1.7963 -2.5840 0.3141 40 1 3.2603 -2.8205 2.2963 41 1 1.8046 -3.8324 2.4637 42 1 0.7422 -2.1049 3.8690 43 1 1.2403 -2.5913 6.5553 44 1 1.1499 -4.1574 5.6881 45 1 2.9689 -3.4061 7.8458 46 1 2.8771 -4.9715 6.9808 47 1 3.3809 -0.6067 3.5253 48 1 2.0084 -0.0958 4.5381 49 1 1.9955 1.0693 2.3422 50 1 0.5649 0.0279 2.5320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852723356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:46 Heat of formation + Delta-G solvation = -98.568807 kcal Electronic energy + Delta-G solvation = -31200.925261 eV Core-core repulsion = 27035.574306 eV Total energy + Delta-G solvation = -4165.350955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60900 -41.41116 -39.54170 -38.23670 -36.92240 -36.55867 -34.83243 -34.07458 -31.82929 -31.34702 -30.26380 -29.45698 -27.56621 -26.22141 -25.10459 -24.51160 -24.23727 -23.42916 -21.94703 -20.49757 -19.94261 -19.14020 -18.39022 -18.22866 -17.84150 -17.56125 -17.36230 -16.56032 -16.16686 -16.07145 -15.86464 -15.62090 -15.54109 -15.03395 -14.98628 -14.94783 -14.62243 -14.46151 -14.14256 -14.02497 -13.82279 -13.68561 -13.38301 -13.34380 -13.17650 -13.11064 -12.91703 -12.81117 -12.56588 -12.43990 -12.24976 -12.02394 -11.97734 -11.78974 -11.74834 -11.68770 -11.50361 -11.24293 -10.83891 -10.24674 -9.80698 -9.37546 -9.10609 -8.34926 -6.38704 1.30738 1.35402 1.43141 1.44551 1.66419 1.82085 2.23160 2.29799 2.63742 2.99723 3.01294 3.39011 3.54591 3.63926 3.79425 3.92537 4.03774 4.07511 4.13457 4.24187 4.28617 4.34179 4.36525 4.39159 4.52757 4.57875 4.64996 4.67001 4.72088 4.74368 4.77411 4.78732 4.81914 4.90307 4.94685 4.97712 5.05441 5.16781 5.22471 5.25689 5.37079 5.46060 5.54896 5.68757 6.03569 6.24875 6.26519 6.40929 6.61865 6.75415 6.99642 7.22394 7.49748 8.81965 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002668 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.415138 B =10491.751800 C =11213.424445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 H 0.129 0.871 4 C 0.501 3.499 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.068 3.932 8 C 0.224 3.776 9 C -0.529 4.529 10 H 0.030 0.970 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.945 3.055 14 H -0.280 1.280 15 H -0.273 1.273 16 H -0.239 1.239 17 N -0.539 5.539 18 C 0.040 3.960 19 C -0.122 4.122 20 C 0.184 3.816 21 N -0.623 5.623 22 C 0.062 3.938 23 C 0.034 3.966 24 O -0.356 6.356 25 C 0.632 3.368 26 O -0.571 6.571 27 C -0.125 4.125 28 C 0.062 3.938 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.012 0.988 37 H 0.268 0.732 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.049 0.951 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 8.004 29.420 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.033 4.033 3 H 0.147 0.853 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.338 5.338 7 C -0.074 4.074 8 C 0.102 3.898 9 C -0.567 4.567 10 H 0.049 0.951 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.768 3.232 14 H -0.206 1.206 15 H -0.198 1.198 16 H -0.163 1.163 17 N -0.264 5.264 18 C -0.088 4.088 19 C -0.161 4.161 20 C 0.083 3.917 21 N -0.370 5.370 22 C -0.060 4.060 23 C -0.040 4.040 24 O -0.266 6.266 25 C 0.387 3.613 26 O -0.459 6.459 27 C -0.163 4.163 28 C -0.066 4.066 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.152 0.848 46 H 0.143 0.857 47 H 0.067 0.933 48 H 0.115 0.885 49 H 0.112 0.888 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.810 7.462 28.974 30.161 hybrid contribution -0.061 -0.842 -1.065 1.359 sum -3.872 6.620 27.909 28.944 Atomic orbital electron populations 1.22473 0.93476 1.03200 1.04666 1.21599 0.95444 0.98850 0.87422 0.85297 1.21287 0.78183 0.86204 0.85376 1.90485 1.48863 1.20490 1.85710 1.47925 1.58080 1.19887 1.07948 1.22165 0.98956 0.82171 1.04071 1.19300 0.93282 0.93129 0.84132 1.21516 0.97009 1.28521 1.09693 0.95141 1.25809 1.01689 0.94170 0.96980 1.70040 1.35952 1.31680 1.20859 0.85760 0.79450 0.80237 0.77762 1.20626 1.19820 1.16255 1.61781 1.60713 1.02300 1.01644 1.22471 0.96708 0.89435 1.00194 1.21867 1.01037 0.98896 0.94292 1.21063 0.97429 0.91225 0.81995 1.48334 1.04873 1.59589 1.24200 1.23219 0.96187 1.00827 0.85734 1.24772 0.78590 1.04568 0.96026 1.87246 1.35654 1.70834 1.32892 1.18809 0.83775 0.77607 0.81146 1.91038 1.55748 1.55277 1.43804 1.21940 1.01256 0.94464 0.98674 1.22153 0.99168 0.97975 0.87271 0.93117 0.87569 0.90925 0.90497 0.91716 0.88233 0.93295 0.96952 0.92315 0.93514 0.89889 0.93815 0.91410 0.85339 0.85816 0.87102 0.84834 0.85683 0.93261 0.88452 0.88797 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 8.07 71.98 0.58 -3.41 16 2 C 0.08 2.20 1.93 44.17 0.09 2.28 16 3 H 0.13 2.85 7.46 -2.39 -0.02 2.83 16 4 C 0.50 20.79 6.83 87.66 0.60 21.39 16 5 O -0.58 -29.96 12.98 -3.03 -0.04 -30.00 16 6 N -0.61 -25.08 2.86 -851.15 -2.43 -27.51 16 7 C 0.07 1.93 9.87 127.77 1.26 3.19 16 8 C 0.22 11.28 4.22 85.63 0.36 11.64 16 9 C -0.53 -31.65 9.94 25.60 0.25 -31.40 16 10 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 11 C 0.01 0.69 5.47 84.66 0.46 1.15 16 12 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 13 Si 0.94 45.95 27.47 68.60 1.88 47.84 16 14 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.24 -10.53 6.54 99.48 0.65 -9.87 16 17 N -0.54 -15.47 4.55 -875.53 -3.99 -19.46 16 18 C 0.04 1.24 4.54 86.33 0.39 1.64 16 19 C -0.12 -3.50 5.42 30.65 0.17 -3.33 16 20 C 0.18 3.51 2.86 45.07 0.13 3.64 16 21 N -0.62 -11.32 2.85 -926.89 -2.64 -13.97 16 22 C 0.06 0.37 7.67 86.64 0.66 1.04 16 23 C 0.03 0.23 8.23 72.35 0.60 0.83 16 24 O -0.36 -7.81 11.09 -47.33 -0.52 -8.34 16 25 C 0.63 17.33 8.30 129.91 1.08 18.41 16 26 O -0.57 -22.13 14.98 19.63 0.29 -21.84 16 27 C -0.12 -2.46 5.43 30.64 0.17 -2.29 16 28 C 0.06 1.14 5.03 86.32 0.43 1.58 16 29 H 0.05 1.32 6.11 -2.39 -0.01 1.30 16 30 H 0.11 1.48 7.07 -2.39 -0.02 1.46 16 31 H 0.07 1.67 5.88 -2.39 -0.01 1.66 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 34 H 0.10 2.15 4.34 -2.38 -0.01 2.14 16 35 H 0.05 2.26 7.13 -2.38 -0.02 2.25 16 36 H 0.01 0.68 6.92 -2.39 -0.02 0.66 16 37 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 38 H 0.05 1.24 6.44 -2.39 -0.02 1.22 16 39 H 0.08 3.56 4.76 -9.07 -0.04 3.51 16 40 H 0.04 1.67 6.70 -2.39 -0.02 1.66 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.13 1.51 8.10 -2.38 -0.02 1.49 16 43 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.05 1.43 6.77 -2.39 -0.02 1.41 16 48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 50 H 0.06 0.86 6.92 -2.39 -0.02 0.84 16 Total: -1.00 -94.70 379.43 0.94 -93.75 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.86 Total: 13.49 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 7.23 Total: 26.34 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -8.76 Total: -121.25 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -0.27 Total: -60.17 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.84 kcal Total: -94.70 0.94 -93.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852723356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.815 kcal (2) G-P(sol) polarization free energy of solvation -94.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds