Wall clock time and date at job start Tue Mar 31 2020 22:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47050 * 2 1 4 4 C 1.50699 * 109.47039 * 239.99276 * 2 1 3 5 5 O 1.21282 * 120.00134 * 244.88567 * 4 2 1 6 6 N 1.34776 * 119.99977 * 64.89573 * 4 2 1 7 7 C 1.46506 * 119.99721 * 5.40930 * 6 4 2 8 8 C 1.46499 * 120.00192 * 185.41474 * 6 4 2 9 9 C 1.50701 * 109.47132 * 89.99412 * 8 6 4 10 10 H 1.08003 * 120.00116 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00165 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99985 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00313 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46872 * 59.99753 * 13 11 9 15 15 H 1.48500 * 109.47063 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46877 * 299.99666 * 13 11 9 17 17 N 1.46906 * 109.46941 * 119.99566 * 2 1 3 18 18 C 1.46851 * 111.00178 * 295.00095 * 17 2 1 19 19 C 1.53075 * 109.49690 * 185.95797 * 18 17 2 20 20 C 1.52910 * 109.29035 * 301.07341 * 19 18 17 21 21 C 1.53266 * 109.61905 * 177.65199 * 20 19 18 22 22 C 1.53137 * 108.42740 * 58.59730 * 21 20 19 23 23 N 1.46053 * 109.93190 * 47.71265 * 22 21 20 24 24 C 1.33727 * 123.02899 * 340.40552 * 23 22 21 25 25 O 1.21507 * 118.48234 * 182.46450 * 24 23 22 26 26 O 1.34249 * 123.03559 * 2.48512 * 24 23 22 27 27 C 1.52904 * 109.52694 * 57.32579 * 20 19 18 28 28 C 1.46846 * 110.99993 * 59.27218 * 17 2 1 29 29 H 1.09000 * 109.46975 * 310.66547 * 1 2 3 30 30 H 1.08998 * 109.46936 * 70.66948 * 1 2 3 31 31 H 1.08997 * 109.46988 * 190.66361 * 1 2 3 32 32 H 1.08998 * 109.47174 * 96.10201 * 7 6 4 33 33 H 1.09006 * 109.46731 * 216.09939 * 7 6 4 34 34 H 1.08997 * 109.47117 * 336.10103 * 7 6 4 35 35 H 1.08995 * 109.47241 * 209.99794 * 8 6 4 36 36 H 1.09004 * 109.46902 * 329.99712 * 8 6 4 37 37 H 0.96993 * 120.00714 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.46179 * 305.96445 * 18 17 2 39 39 H 1.09002 * 109.46650 * 65.94681 * 18 17 2 40 40 H 1.08993 * 109.49779 * 61.02766 * 19 18 17 41 41 H 1.08997 * 109.49353 * 181.13548 * 19 18 17 42 42 H 1.09001 * 109.67224 * 178.31565 * 21 20 19 43 43 H 1.09003 * 109.67705 * 298.84745 * 21 20 19 44 44 H 1.09002 * 109.39429 * 287.57434 * 22 21 20 45 45 H 1.08997 * 109.32072 * 167.81248 * 22 21 20 46 46 H 0.96999 * 118.48408 * 160.37031 * 23 22 21 47 47 H 1.09007 * 109.50114 * 182.72747 * 27 20 19 48 48 H 1.09007 * 109.53446 * 62.64300 * 27 20 19 49 49 H 1.09007 * 109.46281 * 294.05057 * 28 17 2 50 50 H 1.09001 * 109.46713 * 54.03761 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.6548 -1.7457 -1.1212 6 7 1.7901 -0.1956 -2.4521 7 6 1.1433 1.1127 -2.5804 8 6 2.1734 -0.9440 -3.6517 9 6 1.0317 -1.8314 -4.0763 10 1 0.1124 -1.8370 -3.5095 11 6 1.1608 -2.6361 -5.1883 12 7 2.2801 -2.6290 -5.8789 13 14 -0.2545 -3.7356 -5.7151 14 1 -1.4457 -2.9003 -6.0130 15 1 0.1341 -4.4943 -6.9311 16 1 -0.5773 -4.6856 -4.6203 17 7 2.0197 -0.6924 1.1995 18 6 1.6488 0.0390 2.4177 19 6 2.2993 -0.6281 3.6322 20 6 1.8333 -2.0818 3.7200 21 6 2.5255 -2.7738 4.8994 22 6 2.1818 -2.0073 6.1798 23 7 0.7447 -1.7535 6.2377 24 6 -0.0471 -1.7971 5.1609 25 8 -1.2242 -1.5276 5.2960 26 8 0.3983 -2.1254 3.9378 27 6 2.1815 -2.8094 2.4210 28 6 1.5346 -2.0778 1.2423 29 1 -0.3633 0.6697 0.7795 30 1 -0.3633 0.3402 -0.9697 31 1 -0.3633 -1.0099 0.1902 32 1 1.9036 1.8826 -2.7114 33 1 0.4796 1.1066 -3.4451 34 1 0.5654 1.3221 -1.6802 35 1 2.4096 -0.2464 -4.4551 36 1 3.0481 -1.5568 -3.4336 37 1 2.3712 -3.1954 -6.6610 38 1 1.9939 1.0701 2.3414 39 1 0.5650 0.0263 2.5333 40 1 3.3836 -0.5992 3.5258 41 1 2.0077 -0.0972 4.5384 42 1 2.1715 -3.8015 4.9810 43 1 3.6047 -2.7680 4.7464 44 1 2.7176 -1.0580 6.1883 45 1 2.4801 -2.5988 7.0453 46 1 0.3461 -1.5441 7.0969 47 1 1.8063 -3.8320 2.4649 48 1 3.2637 -2.8244 2.2904 49 1 0.4514 -2.0798 1.3638 50 1 1.7968 -2.5833 0.3129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932767710.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:24 Heat of formation + Delta-G solvation = -88.051582 kcal Electronic energy + Delta-G solvation = -31785.669540 eV Core-core repulsion = 27620.774646 eV Total energy + Delta-G solvation = -4164.894894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63281 -39.87140 -38.38439 -36.77585 -35.86436 -34.84657 -33.85145 -32.60350 -31.12482 -30.89924 -28.72742 -27.48920 -26.12093 -25.30757 -24.13773 -23.73992 -23.16007 -22.12555 -20.49686 -19.49872 -18.41526 -17.85609 -17.41713 -16.51953 -16.44170 -16.39767 -16.01874 -15.38215 -15.19448 -14.92083 -14.82124 -14.63145 -14.40566 -14.17855 -13.89766 -13.79569 -13.35281 -12.98854 -12.70269 -12.56935 -12.37848 -12.26954 -12.07900 -12.02055 -11.95086 -11.71098 -11.53228 -11.36508 -11.24091 -11.07623 -11.00250 -10.80353 -10.73056 -10.53465 -10.32013 -10.24798 -10.06487 -9.62363 -9.62002 -8.69726 -8.42785 -8.04929 -7.59570 -6.03809 -4.08974 2.37753 2.64308 3.17381 3.32311 3.36581 3.37460 3.44863 3.68242 4.02028 4.11859 4.24528 4.35318 4.45194 4.55873 4.59446 4.88881 5.00477 5.01921 5.11208 5.21007 5.24123 5.27871 5.30997 5.38061 5.41699 5.48609 5.55030 5.59028 5.65189 5.68731 5.75005 5.86161 5.92276 5.93727 5.96811 6.13560 6.23472 6.39834 6.44918 6.48110 7.00479 7.18207 7.25697 7.46194 7.47840 7.57054 7.90504 7.93048 8.24020 8.45109 8.90843 9.12965 9.56406 11.04055 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.002857 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.203579 B = 9797.956635 C =10124.077203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.515 3.485 5 O -0.527 6.527 6 N -0.601 5.601 7 C 0.069 3.931 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.512 5.512 18 C 0.054 3.946 19 C -0.131 4.131 20 C 0.115 3.885 21 C -0.164 4.164 22 C 0.104 3.896 23 N -0.735 5.735 24 C 0.657 3.343 25 O -0.541 6.541 26 O -0.328 6.328 27 C -0.097 4.097 28 C 0.034 3.966 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.416 0.584 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.038 0.962 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 5.963 23.930 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.301 3.699 5 O -0.404 6.404 6 N -0.333 5.333 7 C -0.075 4.075 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.236 5.236 18 C -0.075 4.075 19 C -0.169 4.169 20 C 0.078 3.922 21 C -0.201 4.201 22 C -0.021 4.021 23 N -0.402 5.402 24 C 0.410 3.590 25 O -0.427 6.427 26 O -0.239 6.239 27 C -0.135 4.135 28 C -0.093 4.093 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.253 0.747 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.057 0.943 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.653 5.323 23.338 24.084 hybrid contribution -1.657 -0.379 0.187 1.710 sum 0.996 4.944 23.525 24.059 Atomic orbital electron populations 1.22610 0.95629 1.03439 1.03383 1.21623 0.94092 0.98646 0.90291 0.88338 1.20018 0.80391 0.85514 0.83987 1.90534 1.40344 1.23956 1.85600 1.48088 1.58783 1.19209 1.07237 1.21939 0.97551 0.85153 1.02818 1.19268 0.96831 0.91156 0.80039 1.21398 1.00349 1.23831 1.11052 0.92564 1.24925 0.95979 0.96817 0.96289 1.69922 1.25225 1.39806 1.18385 0.86581 0.82293 0.80713 0.77973 1.20262 1.21175 1.20164 1.61901 1.59293 1.02280 1.00144 1.22032 0.98468 0.97523 0.89428 1.22134 1.02681 0.93610 0.98446 1.22468 0.76252 0.96792 0.96688 1.22550 1.03498 1.00578 0.93517 1.21574 0.80660 1.00708 0.99120 1.45323 1.09130 1.75105 1.10692 1.17945 0.85120 0.76081 0.79871 1.91030 1.15085 1.52877 1.83677 1.86775 1.26536 1.81831 1.28791 1.21634 1.02557 0.98718 0.90554 1.22569 0.96985 0.88740 1.01038 0.92045 0.90164 0.91346 0.93683 0.91019 0.91232 0.95107 0.93671 0.92661 0.90572 0.93993 0.88719 0.91170 0.89545 0.87573 0.90799 0.89613 0.74666 0.90409 0.88513 0.94339 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 7.95 37.16 0.30 -2.43 16 2 C 0.07 1.00 1.94 -68.86 -0.13 0.87 16 3 H 0.10 1.30 7.68 -51.93 -0.40 0.91 16 4 C 0.52 10.49 6.76 -10.99 -0.07 10.41 16 5 O -0.53 -12.66 13.24 5.56 0.07 -12.58 16 6 N -0.60 -12.58 2.85 -182.95 -0.52 -13.10 16 7 C 0.07 1.09 9.71 59.85 0.58 1.67 16 8 C 0.25 6.40 5.23 -5.19 -0.03 6.38 16 9 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 13 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.51 -7.37 4.46 -228.02 -1.02 -8.39 16 18 C 0.05 0.62 4.92 -3.81 -0.02 0.60 16 19 C -0.13 -1.20 4.47 -26.74 -0.12 -1.32 16 20 C 0.11 1.13 0.69 -90.58 -0.06 1.07 16 21 C -0.16 -1.02 5.12 -26.52 -0.14 -1.16 16 22 C 0.10 0.49 6.51 -4.21 -0.03 0.47 16 23 N -0.73 -5.73 5.43 -65.91 -0.36 -6.09 16 24 C 0.66 8.38 8.03 53.59 0.43 8.81 16 25 O -0.54 -9.13 17.95 -19.40 -0.35 -9.48 16 26 O -0.33 -4.34 8.89 -39.37 -0.35 -4.69 16 27 C -0.10 -1.14 5.12 -26.74 -0.14 -1.28 16 28 C 0.03 0.52 4.39 -3.81 -0.02 0.50 16 29 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 30 H 0.08 1.14 5.39 -51.93 -0.28 0.86 16 31 H 0.07 1.09 6.00 -51.93 -0.31 0.78 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 34 H 0.07 0.90 4.12 -51.93 -0.21 0.69 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.04 0.55 6.65 -51.93 -0.35 0.20 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.57 6.38 -51.93 -0.33 0.23 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.27 7.11 -51.93 -0.37 -0.10 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.42 2.53 8.84 -40.82 -0.36 2.17 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.04 0.63 6.06 -51.93 -0.31 0.32 16 50 H 0.12 2.35 5.14 -51.93 -0.27 2.08 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -35.97 377.97 -8.69 -44.66 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.71 Total: 1.83 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 0.13 Total: 11.10 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.16 Total: -53.37 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.62 Total: -26.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.97 -8.69 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932767710.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.393 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds