Wall clock time and date at job start Tue Mar 31 2020 22:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47050 * 2 1 4 4 C 1.50699 * 109.47039 * 239.99276 * 2 1 3 5 5 O 1.21282 * 120.00134 * 244.88567 * 4 2 1 6 6 N 1.34776 * 119.99977 * 64.89573 * 4 2 1 7 7 C 1.46506 * 119.99721 * 5.40930 * 6 4 2 8 8 C 1.46499 * 120.00192 * 185.41474 * 6 4 2 9 9 C 1.50701 * 109.47132 * 89.99412 * 8 6 4 10 10 H 1.08003 * 120.00116 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00165 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99985 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00313 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46872 * 59.99753 * 13 11 9 15 15 H 1.48500 * 109.47063 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46877 * 299.99666 * 13 11 9 17 17 N 1.46906 * 109.46941 * 119.99566 * 2 1 3 18 18 C 1.46851 * 111.00178 * 295.00095 * 17 2 1 19 19 C 1.53075 * 109.49690 * 185.95797 * 18 17 2 20 20 C 1.52910 * 109.29035 * 301.07341 * 19 18 17 21 21 C 1.53266 * 109.61905 * 177.65199 * 20 19 18 22 22 C 1.53137 * 108.42740 * 58.59730 * 21 20 19 23 23 N 1.46053 * 109.93190 * 47.71265 * 22 21 20 24 24 C 1.33727 * 123.02899 * 340.40552 * 23 22 21 25 25 O 1.21507 * 118.48234 * 182.46450 * 24 23 22 26 26 O 1.34249 * 123.03559 * 2.48512 * 24 23 22 27 27 C 1.52904 * 109.52694 * 57.32579 * 20 19 18 28 28 C 1.46846 * 110.99993 * 59.27218 * 17 2 1 29 29 H 1.09000 * 109.46975 * 310.66547 * 1 2 3 30 30 H 1.08998 * 109.46936 * 70.66948 * 1 2 3 31 31 H 1.08997 * 109.46988 * 190.66361 * 1 2 3 32 32 H 1.08998 * 109.47174 * 96.10201 * 7 6 4 33 33 H 1.09006 * 109.46731 * 216.09939 * 7 6 4 34 34 H 1.08997 * 109.47117 * 336.10103 * 7 6 4 35 35 H 1.08995 * 109.47241 * 209.99794 * 8 6 4 36 36 H 1.09004 * 109.46902 * 329.99712 * 8 6 4 37 37 H 0.96993 * 120.00714 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.46179 * 305.96445 * 18 17 2 39 39 H 1.09002 * 109.46650 * 65.94681 * 18 17 2 40 40 H 1.08993 * 109.49779 * 61.02766 * 19 18 17 41 41 H 1.08997 * 109.49353 * 181.13548 * 19 18 17 42 42 H 1.09001 * 109.67224 * 178.31565 * 21 20 19 43 43 H 1.09003 * 109.67705 * 298.84745 * 21 20 19 44 44 H 1.09002 * 109.39429 * 287.57434 * 22 21 20 45 45 H 1.08997 * 109.32072 * 167.81248 * 22 21 20 46 46 H 0.96999 * 118.48408 * 160.37031 * 23 22 21 47 47 H 1.09007 * 109.50114 * 182.72747 * 27 20 19 48 48 H 1.09007 * 109.53446 * 62.64300 * 27 20 19 49 49 H 1.09007 * 109.46281 * 294.05057 * 28 17 2 50 50 H 1.09001 * 109.46713 * 54.03761 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.6548 -1.7457 -1.1212 6 7 1.7901 -0.1956 -2.4521 7 6 1.1433 1.1127 -2.5804 8 6 2.1734 -0.9440 -3.6517 9 6 1.0317 -1.8314 -4.0763 10 1 0.1124 -1.8370 -3.5095 11 6 1.1608 -2.6361 -5.1883 12 7 2.2801 -2.6290 -5.8789 13 14 -0.2545 -3.7356 -5.7151 14 1 -1.4457 -2.9003 -6.0130 15 1 0.1341 -4.4943 -6.9311 16 1 -0.5773 -4.6856 -4.6203 17 7 2.0197 -0.6924 1.1995 18 6 1.6488 0.0390 2.4177 19 6 2.2993 -0.6281 3.6322 20 6 1.8333 -2.0818 3.7200 21 6 2.5255 -2.7738 4.8994 22 6 2.1818 -2.0073 6.1798 23 7 0.7447 -1.7535 6.2377 24 6 -0.0471 -1.7971 5.1609 25 8 -1.2242 -1.5276 5.2960 26 8 0.3983 -2.1254 3.9378 27 6 2.1815 -2.8094 2.4210 28 6 1.5346 -2.0778 1.2423 29 1 -0.3633 0.6697 0.7795 30 1 -0.3633 0.3402 -0.9697 31 1 -0.3633 -1.0099 0.1902 32 1 1.9036 1.8826 -2.7114 33 1 0.4796 1.1066 -3.4451 34 1 0.5654 1.3221 -1.6802 35 1 2.4096 -0.2464 -4.4551 36 1 3.0481 -1.5568 -3.4336 37 1 2.3712 -3.1954 -6.6610 38 1 1.9939 1.0701 2.3414 39 1 0.5650 0.0263 2.5333 40 1 3.3836 -0.5992 3.5258 41 1 2.0077 -0.0972 4.5384 42 1 2.1715 -3.8015 4.9810 43 1 3.6047 -2.7680 4.7464 44 1 2.7176 -1.0580 6.1883 45 1 2.4801 -2.5988 7.0453 46 1 0.3461 -1.5441 7.0969 47 1 1.8063 -3.8320 2.4649 48 1 3.2637 -2.8244 2.2904 49 1 0.4514 -2.0798 1.3638 50 1 1.7968 -2.5833 0.3129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932767710.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:23 Heat of formation + Delta-G solvation = -116.626702 kcal Electronic energy + Delta-G solvation = -31786.908650 eV Core-core repulsion = 27620.774646 eV Total energy + Delta-G solvation = -4166.134004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47452 -41.24196 -39.53973 -37.92746 -36.58015 -36.55613 -35.09379 -34.48495 -32.10408 -31.89599 -29.95443 -29.05722 -27.55942 -26.31065 -25.55007 -24.65170 -24.35216 -23.47825 -21.58887 -20.18115 -19.95380 -18.67892 -18.61431 -18.28048 -17.85658 -17.43349 -17.16713 -16.74840 -16.25583 -16.14219 -15.96254 -15.85079 -15.70807 -15.32194 -14.91201 -14.85405 -14.53970 -14.34330 -14.11802 -13.64326 -13.55764 -13.51148 -13.30068 -13.18652 -13.05459 -12.89830 -12.87691 -12.65842 -12.51364 -12.48217 -12.39392 -12.22887 -12.09664 -12.02592 -11.84971 -11.68869 -11.16816 -11.12594 -10.64829 -10.25710 -10.22762 -9.38385 -9.23290 -8.22701 -6.37692 1.35118 1.38684 1.46069 1.54321 1.82723 1.84097 2.24251 2.39776 2.48800 2.97429 3.06424 3.40343 3.47146 3.61338 3.65223 3.93592 3.96962 4.04910 4.14098 4.20861 4.31689 4.35586 4.46210 4.48070 4.54596 4.60774 4.65242 4.69183 4.70923 4.72783 4.80694 4.89801 4.92664 5.01115 5.02048 5.04914 5.11207 5.19826 5.20412 5.25277 5.28443 5.57198 5.81790 5.85231 5.95689 6.06579 6.14967 6.66745 6.70338 6.82448 7.08664 7.28503 7.52450 8.83869 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.002857 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.203579 B = 9797.956635 C =10124.077203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.132 0.868 4 C 0.504 3.496 5 O -0.573 6.573 6 N -0.610 5.610 7 C 0.065 3.935 8 C 0.262 3.738 9 C -0.543 4.543 10 H 0.051 0.949 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.279 1.279 17 N -0.515 5.515 18 C 0.052 3.948 19 C -0.126 4.126 20 C 0.111 3.889 21 C -0.159 4.159 22 C 0.100 3.900 23 N -0.716 5.716 24 C 0.654 3.346 25 O -0.597 6.597 26 O -0.356 6.356 27 C -0.094 4.094 28 C 0.040 3.960 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.022 0.978 36 H 0.000 1.000 37 H 0.267 0.733 38 H 0.099 0.901 39 H 0.025 0.975 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.425 0.575 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.019 0.981 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 7.382 26.622 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 H 0.149 0.851 4 C 0.292 3.708 5 O -0.453 6.453 6 N -0.341 5.341 7 C -0.077 4.077 8 C 0.140 3.860 9 C -0.581 4.581 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.204 1.204 17 N -0.240 5.240 18 C -0.076 4.076 19 C -0.163 4.163 20 C 0.075 3.925 21 C -0.197 4.197 22 C -0.022 4.022 23 N -0.383 5.383 24 C 0.407 3.593 25 O -0.487 6.487 26 O -0.268 6.268 27 C -0.131 4.131 28 C -0.088 4.088 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.043 0.957 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.264 0.736 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.038 0.962 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.048 6.783 26.070 27.109 hybrid contribution -1.691 -0.832 -0.664 1.998 sum 1.357 5.951 25.406 26.129 Atomic orbital electron populations 1.22544 0.94744 1.02603 1.04346 1.21591 0.94497 0.99272 0.88204 0.85067 1.21017 0.79465 0.85164 0.85126 1.90523 1.42303 1.26077 1.86433 1.48099 1.59232 1.20707 1.06089 1.22209 0.98274 0.82977 1.04203 1.18709 0.94744 0.90709 0.81812 1.21664 1.00630 1.24585 1.11250 0.93070 1.25810 0.98631 0.98159 0.96301 1.70038 1.27122 1.40652 1.18850 0.85532 0.79392 0.78748 0.77534 1.18626 1.20186 1.20450 1.61927 1.59187 1.01860 1.00988 1.22178 0.97874 0.98661 0.88868 1.22168 1.03540 0.92738 0.97880 1.22618 0.75222 0.97680 0.96991 1.22578 1.04646 1.00037 0.92430 1.21919 0.78469 1.02360 0.99468 1.45276 1.10259 1.73160 1.09621 1.18058 0.84905 0.75922 0.80387 1.90980 1.17593 1.55607 1.84488 1.86720 1.28634 1.81863 1.29576 1.21581 1.02648 0.98381 0.90522 1.22313 0.96123 0.89815 1.00535 0.89264 0.90056 0.93917 0.91201 0.91766 0.87961 0.96034 0.98162 0.92368 0.88241 0.95655 0.86762 0.89272 0.90011 0.84798 0.88381 0.86229 0.73554 0.90816 0.87580 0.96243 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.09 7.95 71.98 0.57 -4.52 16 2 C 0.08 2.26 1.94 44.17 0.09 2.35 16 3 H 0.13 3.06 7.68 -2.39 -0.02 3.05 16 4 C 0.50 21.12 6.76 87.66 0.59 21.71 16 5 O -0.57 -29.21 13.24 -3.03 -0.04 -29.25 16 6 N -0.61 -26.13 2.85 -851.12 -2.43 -28.56 16 7 C 0.07 1.98 9.71 127.77 1.24 3.22 16 8 C 0.26 14.29 5.23 85.63 0.45 14.74 16 9 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.59 5.46 84.65 0.46 1.05 16 12 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 13 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 N -0.52 -14.49 4.46 -875.32 -3.91 -18.39 16 18 C 0.05 1.07 4.92 86.34 0.42 1.49 16 19 C -0.13 -1.89 4.47 30.59 0.14 -1.75 16 20 C 0.11 1.99 0.69 -10.77 -0.01 1.98 16 21 C -0.16 -1.43 5.12 30.73 0.16 -1.28 16 22 C 0.10 0.50 6.51 86.51 0.56 1.06 16 23 N -0.72 -9.18 5.43 -594.20 -3.23 -12.41 16 24 C 0.65 16.13 8.03 129.95 1.04 17.17 16 25 O -0.60 -20.43 17.95 19.94 0.36 -20.07 16 26 O -0.36 -9.29 8.89 -51.53 -0.46 -9.75 16 27 C -0.09 -2.21 5.12 30.59 0.16 -2.05 16 28 C 0.04 1.28 4.39 86.34 0.38 1.66 16 29 H 0.09 1.99 7.22 -2.39 -0.02 1.97 16 30 H 0.08 2.21 5.39 -2.39 -0.01 2.20 16 31 H 0.04 1.41 6.00 -2.39 -0.01 1.39 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 2.05 8.12 -2.38 -0.02 2.03 16 34 H 0.10 2.41 4.12 -2.39 -0.01 2.40 16 35 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 36 H 0.00 0.02 7.35 -2.38 -0.02 0.00 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 39 H 0.03 0.62 6.65 -2.39 -0.02 0.61 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.05 6.38 -2.39 -0.02 1.03 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.10 0.14 7.11 -2.39 -0.02 0.12 16 45 H 0.12 -0.07 8.14 -2.39 -0.02 -0.08 16 46 H 0.43 4.02 8.84 -92.71 -0.82 3.20 16 47 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.02 0.68 6.06 -2.38 -0.01 0.67 16 50 H 0.08 3.21 5.14 -2.39 -0.01 3.20 16 Total: -1.00 -85.82 377.97 -0.75 -86.57 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.15 Total: 15.07 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.49 Total: 25.46 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -9.28 Total: -115.62 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.14 Total: -59.07 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -85.82 -0.75 -86.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932767710.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.056 kcal (2) G-P(sol) polarization free energy of solvation -85.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds