Wall clock time and date at job start Wed Apr 1 2020 00:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47315 * 2 1 4 4 C 1.34783 * 120.00205 * 83.56027 * 3 2 1 5 5 O 1.21272 * 120.00505 * 185.10562 * 4 3 2 6 6 C 1.50704 * 119.99490 * 5.10232 * 4 3 2 7 7 H 1.08997 * 109.55565 * 314.75457 * 6 4 3 8 8 C 1.53289 * 109.51383 * 74.88591 * 6 4 3 9 9 N 1.47152 * 108.38449 * 172.22141 * 8 6 4 10 10 C 1.34782 * 120.98191 * 129.44319 * 9 8 6 11 11 C 1.50691 * 120.00297 * 174.73591 * 10 9 8 12 12 O 1.21284 * 119.99699 * 354.73848 * 10 9 8 13 13 C 1.47151 * 118.04034 * 309.46637 * 9 8 6 14 14 C 1.53299 * 108.38146 * 50.53350 * 13 9 8 15 15 O 1.42962 * 109.22185 * 307.69959 * 14 13 9 16 16 C 1.46501 * 120.00439 * 263.56188 * 3 2 1 17 17 H 1.08995 * 110.88672 * 179.87062 * 16 3 2 18 18 C 1.55165 * 111.00060 * 303.74772 * 16 3 2 19 19 C 1.54324 * 102.93783 * 153.57259 * 18 16 3 20 20 N 1.47013 * 107.27318 * 337.80703 * 19 18 16 21 21 C 1.36939 * 125.64729 * 178.91788 * 20 19 18 22 22 H 1.08003 * 119.99901 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00057 * 0.02656 * 21 20 19 24 24 N 1.31616 * 120.00079 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00241 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46945 * 60.00029 * 25 23 21 27 27 H 1.48496 * 109.47091 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47230 * 300.00309 * 25 23 21 29 29 C 1.47429 * 108.70706 * 358.94228 * 20 19 18 30 30 H 1.09001 * 109.47558 * 185.16028 * 1 2 3 31 31 H 1.09002 * 109.47186 * 305.16842 * 1 2 3 32 32 H 1.09002 * 109.47133 * 65.16232 * 1 2 3 33 33 H 1.09001 * 109.46807 * 239.99954 * 2 1 3 34 34 H 1.09001 * 109.46798 * 120.00040 * 2 1 3 35 35 H 1.09007 * 109.68444 * 52.50356 * 8 6 4 36 36 H 1.08997 * 109.68846 * 291.94933 * 8 6 4 37 37 H 1.08999 * 109.47257 * 4.21427 * 11 10 9 38 38 H 1.08998 * 109.47445 * 124.21414 * 11 10 9 39 39 H 1.09007 * 109.47598 * 244.21514 * 11 10 9 40 40 H 1.09000 * 109.68196 * 170.25773 * 13 9 8 41 41 H 1.09001 * 109.67934 * 290.77578 * 13 9 8 42 42 H 1.08996 * 109.51504 * 67.62279 * 14 13 9 43 43 H 1.09001 * 109.51165 * 187.72564 * 14 13 9 44 44 H 1.08995 * 110.71679 * 271.93793 * 18 16 3 45 45 H 1.08997 * 110.71777 * 35.03540 * 18 16 3 46 46 H 1.09001 * 109.88144 * 97.22822 * 19 18 16 47 47 H 1.09007 * 109.88029 * 218.38820 * 19 18 16 48 48 H 0.97000 * 120.00326 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.36311 * 265.28963 * 29 20 19 50 50 H 1.09000 * 110.36544 * 142.96373 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1196 2.0602 1.1599 5 8 2.4349 3.2312 1.1515 6 6 1.8409 1.3642 2.4672 7 1 0.9307 0.7711 2.3780 8 6 3.0172 0.4469 2.8199 9 7 2.8084 -0.0734 4.1804 10 6 2.8945 -1.3933 4.4393 11 6 2.7947 -1.8909 5.8582 12 8 3.0523 -2.1805 3.5303 13 6 2.5024 0.8899 5.2499 14 6 1.3510 1.7857 4.7788 15 8 1.6768 2.3379 3.5010 16 6 2.3967 2.0244 -1.2607 17 1 2.7350 3.0463 -1.0893 18 6 3.4789 1.1975 -2.0040 19 6 3.2522 1.5807 -3.4816 20 7 1.8717 2.0724 -3.5982 21 6 1.2826 2.5325 -4.7456 22 1 0.2581 2.8739 -4.7272 23 6 2.0021 2.5601 -5.9324 24 7 3.2504 2.1436 -5.9549 25 14 1.1983 3.1870 -7.4977 26 1 0.7708 4.5959 -7.3046 27 1 2.1710 3.1133 -8.6174 28 1 0.0139 2.3495 -7.8157 29 6 1.2266 1.9887 -2.2752 30 1 -0.3634 -1.0235 0.0924 31 1 -0.3634 0.5919 0.8401 32 1 -0.3633 0.4317 -0.9326 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.9482 1.0126 2.7821 36 1 3.0617 -0.3816 2.1129 37 1 2.5810 -1.0537 6.5227 38 1 1.9927 -2.6256 5.9301 39 1 3.7381 -2.3534 6.1484 40 1 2.2059 0.3548 6.1521 41 1 3.3817 1.4999 5.4572 42 1 0.4391 1.1941 4.6980 43 1 1.1997 2.5917 5.4968 44 1 4.4776 1.4888 -1.6789 45 1 3.3211 0.1299 -1.8511 46 1 3.9510 2.3651 -3.7725 47 1 3.3889 0.7054 -4.1168 48 1 3.7534 2.1632 -6.7841 49 1 0.6720 1.0550 -2.1820 50 1 0.5649 2.8410 -2.1212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034027959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:51 Heat of formation + Delta-G solvation = -58.192433 kcal Electronic energy + Delta-G solvation = -31438.028527 eV Core-core repulsion = 27274.428423 eV Total energy + Delta-G solvation = -4163.600104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07589 -39.85610 -38.50334 -37.23154 -35.43311 -35.13923 -32.76287 -31.96117 -30.48206 -30.30582 -29.10097 -28.34057 -27.02909 -25.16368 -24.32491 -23.52473 -22.88446 -20.63689 -20.10409 -19.73476 -18.81714 -17.72806 -17.67652 -16.98102 -16.77837 -16.52564 -15.98492 -15.83400 -15.44902 -14.77965 -14.61979 -14.52495 -14.08708 -14.05367 -13.93213 -13.79348 -13.43467 -13.20301 -13.07755 -12.56921 -12.55422 -12.48294 -12.32377 -12.10861 -12.03918 -11.86124 -11.58338 -11.33011 -10.99242 -10.85314 -10.79912 -10.74767 -10.60075 -10.26732 -10.22451 -10.11166 -9.79147 -9.70232 -9.58108 -9.02654 -8.60715 -8.41537 -6.82776 -5.69991 -3.04072 2.16090 2.28622 2.59584 2.73792 3.42500 3.46566 3.47857 3.61877 4.04979 4.20806 4.32615 4.39340 4.46494 4.51999 4.60455 4.72340 4.83308 4.89190 4.95352 5.06502 5.12822 5.16651 5.24139 5.36989 5.38918 5.43563 5.45534 5.50115 5.61739 5.70734 5.77593 5.79614 5.81767 5.84874 6.11436 6.26927 6.31920 6.50402 6.58326 6.64483 6.71379 6.85964 6.98097 7.50724 7.56451 7.61331 7.68785 7.82773 8.21950 8.27206 9.22448 9.82466 10.47460 11.41524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.002600 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.207593 B =10767.888274 C =11164.972928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.523 3.477 5 O -0.516 6.516 6 C 0.062 3.938 7 H 0.088 0.912 8 C 0.086 3.914 9 N -0.617 5.617 10 C 0.514 3.486 11 C -0.178 4.178 12 O -0.540 6.540 13 C 0.065 3.935 14 C 0.045 3.955 15 O -0.349 6.349 16 C 0.124 3.876 17 H 0.107 0.893 18 C -0.154 4.154 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.129 3.871 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.253 0.747 49 H 0.029 0.971 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -7.553 27.235 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.308 3.692 5 O -0.390 6.390 6 C 0.000 4.000 7 H 0.106 0.894 8 C -0.037 4.037 9 N -0.353 5.353 10 C 0.304 3.696 11 C -0.237 4.237 12 O -0.416 6.416 13 C -0.057 4.057 14 C -0.032 4.032 15 O -0.266 6.266 16 C 0.021 3.979 17 H 0.125 0.875 18 C -0.193 4.193 19 C 0.055 3.945 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.001 3.999 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.269 -7.122 26.476 27.511 hybrid contribution -0.454 0.030 -0.693 0.829 sum -2.723 -7.093 25.784 26.880 Atomic orbital electron populations 1.22396 0.95584 1.02218 1.03273 1.21751 0.94832 0.82621 1.03815 1.47888 1.64304 1.13966 1.06362 1.19773 0.78245 0.86916 0.84244 1.90725 1.46163 1.15451 1.86685 1.22377 0.99183 0.90292 0.88161 0.89395 1.22239 0.98086 0.98681 0.84664 1.48227 1.71225 1.06606 1.09225 1.20882 0.75524 0.81158 0.92074 1.22019 1.05562 1.03200 0.92876 1.90752 1.49072 1.54305 1.47482 1.22670 1.00021 0.92117 0.90926 1.23072 0.95929 0.98296 0.85949 1.88131 1.90830 1.30858 1.16790 1.22506 0.96649 0.97783 0.80967 0.87499 1.23279 0.97736 0.99063 0.99195 1.21140 0.86522 0.98664 0.88168 1.44377 1.09955 1.75196 1.03430 1.19001 0.96082 1.35484 0.85112 0.90461 1.24805 0.96239 1.01456 0.97856 1.69941 1.08523 1.52380 1.26108 0.86181 0.78029 0.78677 0.82757 1.21133 1.21594 1.21183 1.21887 0.93458 0.98642 0.85870 0.91461 0.92949 0.90681 0.88774 0.90723 0.89744 0.86945 0.89936 0.88525 0.88396 0.87857 0.89877 0.92331 0.86827 0.91838 0.91959 0.93294 0.93616 0.93657 0.95402 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.75 37.16 0.36 -1.66 16 2 C 0.09 1.15 4.88 -4.05 -0.02 1.13 16 3 N -0.59 -9.06 2.53 -163.68 -0.41 -9.48 16 4 C 0.52 8.29 6.92 -10.98 -0.08 8.21 16 5 O -0.52 -10.30 15.96 -13.88 -0.22 -10.52 16 6 C 0.06 0.75 2.35 -27.73 -0.07 0.68 16 7 H 0.09 0.95 6.03 -51.93 -0.31 0.63 16 8 C 0.09 0.94 5.69 -3.54 -0.02 0.92 16 9 N -0.62 -5.31 3.02 -172.28 -0.52 -5.83 16 10 C 0.51 4.73 7.81 -10.99 -0.09 4.64 16 11 C -0.18 -0.80 10.11 36.00 0.36 -0.44 16 12 O -0.54 -7.31 16.57 5.55 0.09 -7.22 16 13 C 0.07 0.35 6.48 -3.53 -0.02 0.33 16 14 C 0.05 0.31 6.99 37.31 0.26 0.57 16 15 O -0.35 -4.23 9.96 -54.67 -0.54 -4.78 16 16 C 0.12 2.33 3.45 -65.78 -0.23 2.10 16 17 H 0.11 2.25 7.02 -51.93 -0.36 1.89 16 18 C -0.15 -2.91 6.48 -24.89 -0.16 -3.07 16 19 C 0.18 4.38 5.37 -3.07 -0.02 4.37 16 20 N -0.60 -15.51 3.39 -170.07 -0.58 -16.09 16 21 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 22 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -27.23 10.31 55.49 0.57 -26.65 16 25 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 C 0.13 2.70 6.60 -2.53 -0.02 2.69 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.57 6.93 -51.93 -0.36 0.21 16 32 H 0.07 1.00 5.90 -51.93 -0.31 0.69 16 33 H 0.09 1.23 6.24 -51.93 -0.32 0.91 16 34 H 0.07 0.82 4.72 -51.93 -0.25 0.57 16 35 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.11 1.31 4.92 -51.93 -0.26 1.05 16 37 H 0.08 0.16 5.21 -51.93 -0.27 -0.11 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.22 5.27 -51.93 -0.27 -0.06 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 1.07 6.23 -51.93 -0.32 0.74 16 46 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 47 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.03 0.56 5.10 -51.93 -0.26 0.29 16 50 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -36.19 379.13 -8.32 -44.52 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.43 Total: -0.56 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 0.03 Total: 13.60 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.94 Total: -58.05 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.67 Total: -22.51 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.19 -8.32 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds