Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47315 * 2 1 4 4 C 1.34783 * 120.00205 * 83.56027 * 3 2 1 5 5 O 1.21272 * 120.00505 * 185.10562 * 4 3 2 6 6 C 1.50704 * 119.99490 * 5.10232 * 4 3 2 7 7 H 1.08997 * 109.55565 * 314.75457 * 6 4 3 8 8 C 1.53289 * 109.51383 * 74.88591 * 6 4 3 9 9 N 1.47152 * 108.38449 * 172.22141 * 8 6 4 10 10 C 1.34782 * 120.98191 * 129.44319 * 9 8 6 11 11 C 1.50691 * 120.00297 * 174.73591 * 10 9 8 12 12 O 1.21284 * 119.99699 * 354.73848 * 10 9 8 13 13 C 1.47151 * 118.04034 * 309.46637 * 9 8 6 14 14 C 1.53299 * 108.38146 * 50.53350 * 13 9 8 15 15 O 1.42962 * 109.22185 * 307.69959 * 14 13 9 16 16 C 1.46501 * 120.00439 * 263.56188 * 3 2 1 17 17 H 1.08995 * 110.88672 * 179.87062 * 16 3 2 18 18 C 1.55165 * 111.00060 * 303.74772 * 16 3 2 19 19 C 1.54324 * 102.93783 * 153.57259 * 18 16 3 20 20 N 1.47013 * 107.27318 * 337.80703 * 19 18 16 21 21 C 1.36939 * 125.64729 * 178.91788 * 20 19 18 22 22 H 1.08003 * 119.99901 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00057 * 0.02656 * 21 20 19 24 24 N 1.31616 * 120.00079 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00241 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46945 * 60.00029 * 25 23 21 27 27 H 1.48496 * 109.47091 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47230 * 300.00309 * 25 23 21 29 29 C 1.47429 * 108.70706 * 358.94228 * 20 19 18 30 30 H 1.09001 * 109.47558 * 185.16028 * 1 2 3 31 31 H 1.09002 * 109.47186 * 305.16842 * 1 2 3 32 32 H 1.09002 * 109.47133 * 65.16232 * 1 2 3 33 33 H 1.09001 * 109.46807 * 239.99954 * 2 1 3 34 34 H 1.09001 * 109.46798 * 120.00040 * 2 1 3 35 35 H 1.09007 * 109.68444 * 52.50356 * 8 6 4 36 36 H 1.08997 * 109.68846 * 291.94933 * 8 6 4 37 37 H 1.08999 * 109.47257 * 4.21427 * 11 10 9 38 38 H 1.08998 * 109.47445 * 124.21414 * 11 10 9 39 39 H 1.09007 * 109.47598 * 244.21514 * 11 10 9 40 40 H 1.09000 * 109.68196 * 170.25773 * 13 9 8 41 41 H 1.09001 * 109.67934 * 290.77578 * 13 9 8 42 42 H 1.08996 * 109.51504 * 67.62279 * 14 13 9 43 43 H 1.09001 * 109.51165 * 187.72564 * 14 13 9 44 44 H 1.08995 * 110.71679 * 271.93793 * 18 16 3 45 45 H 1.08997 * 110.71777 * 35.03540 * 18 16 3 46 46 H 1.09001 * 109.88144 * 97.22822 * 19 18 16 47 47 H 1.09007 * 109.88029 * 218.38820 * 19 18 16 48 48 H 0.97000 * 120.00326 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.36311 * 265.28963 * 29 20 19 50 50 H 1.09000 * 110.36544 * 142.96373 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1196 2.0602 1.1599 5 8 2.4349 3.2312 1.1515 6 6 1.8409 1.3642 2.4672 7 1 0.9307 0.7711 2.3780 8 6 3.0172 0.4469 2.8199 9 7 2.8084 -0.0734 4.1804 10 6 2.8945 -1.3933 4.4393 11 6 2.7947 -1.8909 5.8582 12 8 3.0523 -2.1805 3.5303 13 6 2.5024 0.8899 5.2499 14 6 1.3510 1.7857 4.7788 15 8 1.6768 2.3379 3.5010 16 6 2.3967 2.0244 -1.2607 17 1 2.7350 3.0463 -1.0893 18 6 3.4789 1.1975 -2.0040 19 6 3.2522 1.5807 -3.4816 20 7 1.8717 2.0724 -3.5982 21 6 1.2826 2.5325 -4.7456 22 1 0.2581 2.8739 -4.7272 23 6 2.0021 2.5601 -5.9324 24 7 3.2504 2.1436 -5.9549 25 14 1.1983 3.1870 -7.4977 26 1 0.7708 4.5959 -7.3046 27 1 2.1710 3.1133 -8.6174 28 1 0.0139 2.3495 -7.8157 29 6 1.2266 1.9887 -2.2752 30 1 -0.3634 -1.0235 0.0924 31 1 -0.3634 0.5919 0.8401 32 1 -0.3633 0.4317 -0.9326 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.9482 1.0126 2.7821 36 1 3.0617 -0.3816 2.1129 37 1 2.5810 -1.0537 6.5227 38 1 1.9927 -2.6256 5.9301 39 1 3.7381 -2.3534 6.1484 40 1 2.2059 0.3548 6.1521 41 1 3.3817 1.4999 5.4572 42 1 0.4391 1.1941 4.6980 43 1 1.1997 2.5917 5.4968 44 1 4.4776 1.4888 -1.6789 45 1 3.3211 0.1299 -1.8511 46 1 3.9510 2.3651 -3.7725 47 1 3.3889 0.7054 -4.1168 48 1 3.7534 2.1632 -6.7841 49 1 0.6720 1.0550 -2.1820 50 1 0.5649 2.8410 -2.1212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034027959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -83.405643 kcal Electronic energy + Delta-G solvation = -31439.121854 eV Core-core repulsion = 27274.428423 eV Total energy + Delta-G solvation = -4164.693431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01615 -40.90655 -39.51176 -38.69838 -36.85639 -35.92700 -34.40694 -33.07047 -31.82982 -30.85741 -30.72961 -29.47822 -28.39236 -26.53358 -25.72831 -24.48374 -23.74983 -22.10133 -21.94624 -20.51961 -20.01127 -18.92386 -18.79147 -18.38655 -17.74722 -17.50680 -16.97321 -16.67702 -16.63225 -16.26184 -15.87933 -15.79123 -15.51428 -15.02359 -14.90525 -14.65113 -14.56476 -14.33628 -14.14400 -13.99545 -13.80583 -13.71015 -13.57517 -13.10802 -13.00382 -12.95431 -12.74933 -12.60999 -12.59252 -12.34797 -12.15021 -12.09497 -11.96811 -11.84015 -11.74839 -11.47579 -11.38816 -11.03429 -10.76881 -10.71878 -9.82013 -9.73842 -8.92669 -7.86651 -5.23455 1.24794 1.44461 1.48345 1.50176 1.54469 1.56060 1.84089 2.48505 2.73246 3.28703 3.32150 3.40859 3.60231 3.63847 3.72850 3.81326 3.92194 3.93093 3.95978 4.02645 4.12388 4.22083 4.24409 4.30684 4.42139 4.46866 4.55013 4.58602 4.64210 4.67385 4.70062 4.75825 4.82087 4.87222 4.88202 4.99298 5.07971 5.12122 5.19527 5.33486 5.41882 5.48299 5.59618 5.70437 5.91628 6.16262 6.26925 6.28199 6.96862 7.03796 7.07146 7.72908 8.36943 9.23384 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.002600 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.207593 B =10767.888274 C =11164.972928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 N -0.587 5.587 4 C 0.520 3.480 5 O -0.564 6.564 6 C 0.078 3.922 7 H 0.105 0.895 8 C 0.090 3.910 9 N -0.615 5.615 10 C 0.508 3.492 11 C -0.169 4.169 12 O -0.591 6.591 13 C 0.065 3.935 14 C 0.036 3.964 15 O -0.381 6.381 16 C 0.139 3.861 17 H 0.081 0.919 18 C -0.135 4.135 19 C 0.190 3.810 20 N -0.624 5.624 21 C -0.245 4.245 22 H 0.082 0.918 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.981 3.019 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.274 1.274 29 C 0.131 3.869 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.138 0.862 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.011 0.989 47 H 0.018 0.982 48 H 0.248 0.752 49 H 0.050 0.950 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 -8.852 30.375 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.032 4.032 3 N -0.320 5.320 4 C 0.307 3.693 5 O -0.442 6.442 6 C 0.016 3.984 7 H 0.123 0.877 8 C -0.034 4.034 9 N -0.350 5.350 10 C 0.300 3.700 11 C -0.227 4.227 12 O -0.471 6.471 13 C -0.057 4.057 14 C -0.040 4.040 15 O -0.299 6.299 16 C 0.035 3.965 17 H 0.099 0.901 18 C -0.174 4.174 19 C 0.064 3.936 20 N -0.351 5.351 21 C -0.374 4.374 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.809 3.191 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.200 1.200 29 C 0.005 3.995 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.163 0.837 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.156 0.844 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.057 0.943 49 H 0.067 0.933 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.764 -8.436 29.691 31.094 hybrid contribution -0.031 0.460 -1.565 1.632 sum -3.795 -7.976 28.125 29.480 Atomic orbital electron populations 1.22347 0.94401 1.03794 1.02431 1.21977 0.95753 0.80733 1.04691 1.47862 1.64064 1.14950 1.05093 1.20535 0.76861 0.86429 0.85488 1.90698 1.48316 1.17719 1.87456 1.22153 1.00135 0.89817 0.86305 0.87727 1.22003 0.97065 0.97924 0.86442 1.48352 1.70666 1.07203 1.08781 1.21784 0.74092 0.80658 0.93483 1.22066 1.06358 1.04508 0.89811 1.90728 1.51449 1.55550 1.49393 1.22929 0.99763 0.91764 0.91197 1.23459 0.96909 0.99653 0.84002 1.88095 1.91214 1.32007 1.18617 1.21993 0.95436 0.96890 0.82215 0.90119 1.23086 0.98495 1.00510 0.95297 1.20864 0.85461 0.96115 0.91145 1.44653 1.10712 1.75173 1.04574 1.19398 0.96515 1.35235 0.86273 0.90034 1.25675 0.96897 1.02115 1.01036 1.70164 1.09796 1.53539 1.26405 0.85121 0.77185 0.78277 0.78545 1.20502 1.21910 1.20003 1.21997 0.93995 0.99046 0.84495 0.88938 0.92230 0.92713 0.89127 0.88605 0.90994 0.87763 0.86845 0.87568 0.87677 0.83707 0.89598 0.91008 0.84439 0.90622 0.89467 0.97094 0.96417 0.94258 0.93269 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 9.75 71.98 0.70 -2.86 16 2 C 0.09 2.09 4.88 86.38 0.42 2.52 16 3 N -0.59 -17.79 2.53 -790.14 -2.00 -19.79 16 4 C 0.52 16.42 6.92 87.66 0.61 17.02 16 5 O -0.56 -23.15 15.96 15.59 0.25 -22.90 16 6 C 0.08 1.77 2.35 29.95 0.07 1.84 16 7 H 0.11 2.00 6.03 -2.39 -0.01 1.98 16 8 C 0.09 1.85 5.69 86.35 0.49 2.34 16 9 N -0.62 -8.98 3.02 -817.35 -2.47 -11.45 16 10 C 0.51 8.04 7.81 87.65 0.68 8.72 16 11 C -0.17 -0.84 10.11 71.23 0.72 -0.12 16 12 O -0.59 -15.24 16.57 -3.04 -0.05 -15.29 16 13 C 0.06 0.45 6.48 86.36 0.56 1.01 16 14 C 0.04 0.37 6.99 72.08 0.50 0.87 16 15 O -0.38 -8.64 9.96 -130.39 -1.30 -9.94 16 16 C 0.14 5.34 3.45 46.38 0.16 5.50 16 17 H 0.08 3.55 7.02 -2.39 -0.02 3.54 16 18 C -0.13 -5.17 6.48 31.79 0.21 -4.97 16 19 C 0.19 9.63 5.37 86.73 0.47 10.10 16 20 N -0.62 -33.14 3.39 -691.99 -2.35 -35.49 16 21 C -0.25 -14.14 10.28 84.03 0.86 -13.27 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 24 N -0.95 -58.19 10.31 21.65 0.22 -57.97 16 25 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 29 C 0.13 5.59 6.60 86.85 0.57 6.17 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.15 6.93 -2.39 -0.02 1.14 16 32 H 0.05 1.37 5.90 -2.39 -0.01 1.36 16 33 H 0.09 2.22 6.24 -2.39 -0.01 2.20 16 34 H 0.10 1.90 4.72 -2.39 -0.01 1.89 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.10 2.32 4.92 -2.39 -0.01 2.31 16 37 H 0.11 -0.20 5.21 -2.39 -0.01 -0.21 16 38 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.15 -0.22 5.27 -2.39 -0.01 -0.23 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.09 2.92 6.23 -2.39 -0.01 2.90 16 46 H 0.01 0.62 7.38 -2.39 -0.02 0.61 16 47 H 0.02 0.98 7.51 -2.38 -0.02 0.97 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.05 1.94 5.10 -2.39 -0.01 1.92 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -83.87 379.13 2.79 -81.07 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.97 Total: 11.44 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 7.49 Total: 31.61 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -6.59 Total: -124.69 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.10 Total: -48.13 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -83.87 2.79 -81.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.332 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds