Wall clock time and date at job start Tue Mar 31 2020 23:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47155 * 2 1 4 4 C 1.47016 * 111.00022 * 288.16760 * 3 2 1 5 5 C 1.53103 * 109.25686 * 177.60726 * 4 3 2 6 6 O 1.43015 * 109.25840 * 56.84402 * 5 4 3 7 7 C 1.43014 * 113.74181 * 301.33561 * 6 5 4 8 8 C 1.47015 * 111.00005 * 164.52861 * 3 2 1 9 9 H 1.09006 * 109.53772 * 62.44269 * 8 3 2 10 10 C 1.50690 * 109.50734 * 302.33074 * 8 3 2 11 11 O 1.21287 * 120.00213 * 331.88319 * 10 8 3 12 12 N 1.34781 * 119.99964 * 151.88739 * 10 8 3 13 13 C 1.46499 * 119.99771 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.77989 * 31.46188 * 13 12 10 15 15 C 1.55051 * 110.87075 * 267.69585 * 13 12 10 16 16 O 1.44568 * 103.64591 * 205.25441 * 15 13 12 17 17 C 1.42964 * 106.77592 * 39.22878 * 16 15 13 18 18 C 1.53224 * 115.36201 * 203.79425 * 17 16 15 19 19 N 1.47714 * 85.89620 * 266.51810 * 18 17 16 20 20 C 1.36939 * 134.43241 * 155.83854 * 19 18 17 21 21 H 1.08001 * 120.00063 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00265 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47215 * 60.00518 * 24 22 20 26 26 H 1.48502 * 109.47179 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47214 * 300.00442 * 24 22 20 28 28 C 1.47716 * 91.13337 * 335.87579 * 19 18 17 29 29 C 1.53441 * 108.17175 * 334.19302 * 17 16 15 30 30 H 1.08997 * 109.47263 * 300.00162 * 1 2 3 31 31 H 1.09004 * 109.47145 * 59.99902 * 1 2 3 32 32 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47123 * 240.00370 * 2 1 3 34 34 H 1.08996 * 109.47138 * 119.99811 * 2 1 3 35 35 H 1.09001 * 109.50676 * 57.67520 * 4 3 2 36 36 H 1.08998 * 109.53960 * 297.56113 * 4 3 2 37 37 H 1.09004 * 109.50643 * 296.91348 * 5 4 3 38 38 H 1.08998 * 109.53971 * 176.80452 * 5 4 3 39 39 H 1.09006 * 109.50403 * 298.73189 * 7 6 5 40 40 H 1.08998 * 109.50790 * 178.60519 * 7 6 5 41 41 H 0.96994 * 120.00074 * 359.97438 * 12 10 8 42 42 H 1.09002 * 110.59209 * 323.79770 * 15 13 12 43 43 H 1.09008 * 110.58820 * 86.56231 * 15 13 12 44 44 H 1.09005 * 113.79915 * 20.76213 * 18 17 16 45 45 H 1.08996 * 113.80592 * 152.26292 * 18 17 16 46 46 H 0.97009 * 120.00472 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.80655 * 269.87454 * 28 19 18 48 48 H 1.09001 * 113.79970 * 138.36942 * 28 19 18 49 49 H 1.08999 * 110.54701 * 120.25766 * 29 17 16 50 50 H 1.08995 * 110.55272 * 242.93013 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7919 2.0244 -1.3041 5 6 2.2611 3.4804 -1.2415 6 8 3.6373 3.5162 -0.8538 7 6 3.8951 2.9026 0.4120 8 6 3.4425 1.4408 0.3661 9 1 4.0312 0.9006 -0.3754 10 6 3.6385 0.8105 1.7208 11 8 2.7364 0.8221 2.5314 12 7 4.8165 0.2339 2.0317 13 6 5.0068 -0.3793 3.3484 14 1 4.0683 -0.7858 3.7250 15 6 5.6144 0.6377 4.3488 16 8 6.2863 -0.1976 5.3186 17 6 6.8943 -1.2675 4.5909 18 6 7.1615 -2.5420 5.3985 19 7 8.5087 -1.9836 5.6333 20 6 9.4645 -2.1593 6.5982 21 1 9.2865 -2.8409 7.4168 22 6 10.6619 -1.4612 6.5241 23 7 10.8786 -0.6301 5.5268 24 14 11.9654 -1.7003 7.8407 25 1 12.3823 -3.1252 7.8716 26 1 13.1412 -0.8467 7.5339 27 1 11.4088 -1.3186 9.1635 28 6 8.4121 -1.1593 4.4114 29 6 6.1011 -1.4756 3.2940 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7289 1.9946 -1.5433 36 1 2.3531 1.4939 -2.0732 37 1 1.6628 4.0245 -0.5105 38 1 2.1469 3.9427 -2.2219 39 1 3.3443 3.4298 1.1910 40 1 4.9627 2.9464 0.6270 41 1 5.5378 0.2243 1.3833 42 1 6.3275 1.2909 3.8458 43 1 4.8281 1.2244 4.8240 44 1 6.5564 -2.6256 6.3013 45 1 7.1606 -3.4516 4.7980 46 1 11.7154 -0.1420 5.4752 47 1 8.7857 -1.6552 3.5154 48 1 8.7983 -0.1472 4.5319 49 1 6.7437 -1.3320 2.4254 50 1 5.6510 -2.4681 3.2758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053854099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:08 Heat of formation + Delta-G solvation = -43.631506 kcal Electronic energy + Delta-G solvation = -30680.368806 eV Core-core repulsion = 26517.400110 eV Total energy + Delta-G solvation = -4162.968695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93443 -39.91300 -38.73202 -36.52639 -36.06377 -34.50450 -32.31919 -32.07514 -31.24830 -30.25249 -28.11370 -27.01573 -25.74015 -25.18655 -24.93846 -22.59756 -22.34789 -21.64473 -20.94073 -20.31216 -19.05713 -17.83311 -17.00070 -16.84758 -16.70779 -16.24004 -15.65032 -15.38952 -15.21018 -15.01909 -14.98097 -14.64455 -14.56483 -14.41389 -13.90695 -13.69552 -13.38306 -13.23290 -13.03463 -12.80319 -12.61656 -12.30875 -12.11483 -12.06173 -11.81335 -11.75776 -11.58633 -11.23278 -11.14900 -11.10150 -10.96661 -10.80767 -10.51764 -10.30768 -10.21501 -9.87832 -9.75697 -9.53146 -9.19559 -8.83042 -8.80533 -8.77280 -6.86461 -5.73504 -3.05072 2.31455 2.71090 3.27899 3.42546 3.46287 3.47492 3.52606 4.22624 4.35126 4.36386 4.47976 4.49844 4.58587 4.62640 4.74171 4.76984 4.91796 4.93957 5.03456 5.09720 5.11589 5.18866 5.24417 5.28174 5.32378 5.34078 5.36480 5.48740 5.53356 5.59580 5.66506 5.83578 5.91373 5.93404 5.95345 6.05211 6.30204 6.35473 6.42909 6.51401 6.53199 6.60394 6.65973 6.92685 7.20957 7.28151 7.51505 7.69445 8.00102 8.01055 9.07267 9.73797 10.60813 11.43956 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.002253 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.289544 B =12422.530171 C =13104.672840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.514 5.514 4 C 0.018 3.982 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.076 3.924 8 C 0.032 3.968 9 H 0.070 0.930 10 C 0.519 3.481 11 O -0.513 6.513 12 N -0.717 5.717 13 C 0.112 3.888 14 H 0.105 0.895 15 C 0.039 3.961 16 O -0.333 6.333 17 C 0.058 3.942 18 C 0.124 3.876 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.154 3.846 29 C -0.146 4.146 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.402 0.598 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.034 0.966 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 4.738 -17.754 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.240 5.240 4 C -0.110 4.110 5 C -0.017 4.017 6 O -0.296 6.296 7 C -0.001 4.001 8 C -0.080 4.080 9 H 0.087 0.913 10 C 0.303 3.697 11 O -0.387 6.387 12 N -0.371 5.371 13 C 0.007 3.993 14 H 0.123 0.877 15 C -0.040 4.040 16 O -0.250 6.250 17 C 0.016 3.984 18 C -0.002 4.002 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.028 3.972 29 C -0.185 4.185 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.812 5.175 -16.498 26.295 hybrid contribution 1.446 -0.869 -0.420 1.738 sum -18.366 4.306 -16.917 25.339 Atomic orbital electron populations 1.21711 0.94229 1.01615 1.02457 1.22192 0.96950 0.87773 1.01096 1.62016 1.14333 1.18638 1.29058 1.22887 1.02530 0.95947 0.89662 1.22739 0.82681 0.95024 1.01269 1.88032 1.26039 1.78672 1.36817 1.22561 1.01857 0.89014 0.86712 1.22315 0.91313 0.99160 0.95254 0.91255 1.20173 0.82437 0.78401 0.88657 1.90741 1.41247 1.56704 1.50029 1.46048 1.15324 1.58614 1.17066 1.22681 1.00219 0.93732 0.82650 0.87718 1.23881 0.95886 0.93640 0.90557 1.88898 1.69324 1.37960 1.28850 1.23779 0.95077 0.89998 0.89515 1.22694 0.88057 0.92565 0.96855 1.45770 1.14467 1.48411 1.24423 1.18950 0.93838 1.21224 1.00661 0.90249 1.24763 0.97877 0.99397 0.98442 1.69795 1.25258 1.30343 1.31650 0.86185 0.81069 0.77330 0.81091 1.21225 1.21579 1.21054 1.22655 0.87467 0.98051 0.88988 1.23066 0.96652 0.98951 0.99838 0.91427 0.92954 0.92219 0.94856 0.90048 0.88888 0.93724 0.91852 0.88108 0.91182 0.87588 0.76270 0.92025 0.89088 0.92958 0.93624 0.93667 0.94840 0.90374 0.89975 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.96 37.16 0.37 -0.73 16 2 C 0.05 0.42 5.36 -3.82 -0.02 0.40 16 3 N -0.51 -4.78 4.23 -227.73 -0.96 -5.74 16 4 C 0.02 0.12 5.46 -3.71 -0.02 0.10 16 5 C 0.06 0.42 7.01 37.21 0.26 0.68 16 6 O -0.38 -3.53 10.83 -35.23 -0.38 -3.91 16 7 C 0.08 0.68 6.27 37.21 0.23 0.91 16 8 C 0.03 0.29 2.38 -68.76 -0.16 0.13 16 9 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 10 C 0.52 5.83 5.74 -10.99 -0.06 5.76 16 11 O -0.51 -7.66 15.24 5.55 0.08 -7.57 16 12 N -0.72 -7.27 5.19 -51.74 -0.27 -7.54 16 13 C 0.11 1.43 3.51 -65.79 -0.23 1.20 16 14 H 0.10 1.45 7.54 -51.93 -0.39 1.06 16 15 C 0.04 0.59 7.42 38.24 0.28 0.88 16 16 O -0.33 -6.68 11.29 -35.23 -0.40 -7.08 16 17 C 0.06 1.09 1.53 -90.28 -0.14 0.95 16 18 C 0.12 2.59 8.34 -3.27 -0.03 2.56 16 19 N -0.60 -15.90 3.70 -181.60 -0.67 -16.57 16 20 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.69 11.39 55.49 0.63 -27.06 16 24 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.15 3.60 6.90 -3.27 -0.02 3.58 16 29 C -0.15 -1.97 6.22 -25.45 -0.16 -2.13 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.34 6.72 -51.93 -0.35 -0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.27 8.05 -51.93 -0.42 -0.15 16 34 H 0.08 0.89 5.97 -51.93 -0.31 0.58 16 35 H 0.09 0.54 6.62 -51.93 -0.34 0.19 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 3.14 8.41 -40.82 -0.34 2.79 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 48 H 0.08 2.07 7.18 -51.93 -0.37 1.70 16 49 H 0.08 0.99 7.52 -51.93 -0.39 0.60 16 50 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -34.97 392.85 -9.39 -44.37 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.37 Total: 0.18 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 0.05 Total: 7.49 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.27 Total: -56.91 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.69 Total: -18.56 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.97 -9.39 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053854099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.734 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds