Wall clock time and date at job start Tue Mar 31 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47155 * 2 1 4 4 C 1.47016 * 111.00022 * 288.16760 * 3 2 1 5 5 C 1.53103 * 109.25686 * 177.60726 * 4 3 2 6 6 O 1.43015 * 109.25840 * 56.84402 * 5 4 3 7 7 C 1.43014 * 113.74181 * 301.33561 * 6 5 4 8 8 C 1.47015 * 111.00005 * 164.52861 * 3 2 1 9 9 H 1.09006 * 109.53772 * 62.44269 * 8 3 2 10 10 C 1.50690 * 109.50734 * 302.33074 * 8 3 2 11 11 O 1.21287 * 120.00213 * 331.88319 * 10 8 3 12 12 N 1.34781 * 119.99964 * 151.88739 * 10 8 3 13 13 C 1.46499 * 119.99771 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.77989 * 31.46188 * 13 12 10 15 15 C 1.55051 * 110.87075 * 267.69585 * 13 12 10 16 16 O 1.44568 * 103.64591 * 205.25441 * 15 13 12 17 17 C 1.42964 * 106.77592 * 39.22878 * 16 15 13 18 18 C 1.53224 * 115.36201 * 203.79425 * 17 16 15 19 19 N 1.47714 * 85.89620 * 266.51810 * 18 17 16 20 20 C 1.36939 * 134.43241 * 155.83854 * 19 18 17 21 21 H 1.08001 * 120.00063 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00265 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47215 * 60.00518 * 24 22 20 26 26 H 1.48502 * 109.47179 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47214 * 300.00442 * 24 22 20 28 28 C 1.47716 * 91.13337 * 335.87579 * 19 18 17 29 29 C 1.53441 * 108.17175 * 334.19302 * 17 16 15 30 30 H 1.08997 * 109.47263 * 300.00162 * 1 2 3 31 31 H 1.09004 * 109.47145 * 59.99902 * 1 2 3 32 32 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47123 * 240.00370 * 2 1 3 34 34 H 1.08996 * 109.47138 * 119.99811 * 2 1 3 35 35 H 1.09001 * 109.50676 * 57.67520 * 4 3 2 36 36 H 1.08998 * 109.53960 * 297.56113 * 4 3 2 37 37 H 1.09004 * 109.50643 * 296.91348 * 5 4 3 38 38 H 1.08998 * 109.53971 * 176.80452 * 5 4 3 39 39 H 1.09006 * 109.50403 * 298.73189 * 7 6 5 40 40 H 1.08998 * 109.50790 * 178.60519 * 7 6 5 41 41 H 0.96994 * 120.00074 * 359.97438 * 12 10 8 42 42 H 1.09002 * 110.59209 * 323.79770 * 15 13 12 43 43 H 1.09008 * 110.58820 * 86.56231 * 15 13 12 44 44 H 1.09005 * 113.79915 * 20.76213 * 18 17 16 45 45 H 1.08996 * 113.80592 * 152.26292 * 18 17 16 46 46 H 0.97009 * 120.00472 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.80655 * 269.87454 * 28 19 18 48 48 H 1.09001 * 113.79970 * 138.36942 * 28 19 18 49 49 H 1.08999 * 110.54701 * 120.25766 * 29 17 16 50 50 H 1.08995 * 110.55272 * 242.93013 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7919 2.0244 -1.3041 5 6 2.2611 3.4804 -1.2415 6 8 3.6373 3.5162 -0.8538 7 6 3.8951 2.9026 0.4120 8 6 3.4425 1.4408 0.3661 9 1 4.0312 0.9006 -0.3754 10 6 3.6385 0.8105 1.7208 11 8 2.7364 0.8221 2.5314 12 7 4.8165 0.2339 2.0317 13 6 5.0068 -0.3793 3.3484 14 1 4.0683 -0.7858 3.7250 15 6 5.6144 0.6377 4.3488 16 8 6.2863 -0.1976 5.3186 17 6 6.8943 -1.2675 4.5909 18 6 7.1615 -2.5420 5.3985 19 7 8.5087 -1.9836 5.6333 20 6 9.4645 -2.1593 6.5982 21 1 9.2865 -2.8409 7.4168 22 6 10.6619 -1.4612 6.5241 23 7 10.8786 -0.6301 5.5268 24 14 11.9654 -1.7003 7.8407 25 1 12.3823 -3.1252 7.8716 26 1 13.1412 -0.8467 7.5339 27 1 11.4088 -1.3186 9.1635 28 6 8.4121 -1.1593 4.4114 29 6 6.1011 -1.4756 3.2940 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7289 1.9946 -1.5433 36 1 2.3531 1.4939 -2.0732 37 1 1.6628 4.0245 -0.5105 38 1 2.1469 3.9427 -2.2219 39 1 3.3443 3.4298 1.1910 40 1 4.9627 2.9464 0.6270 41 1 5.5378 0.2243 1.3833 42 1 6.3275 1.2909 3.8458 43 1 4.8281 1.2244 4.8240 44 1 6.5564 -2.6256 6.3013 45 1 7.1606 -3.4516 4.7980 46 1 11.7154 -0.1420 5.4752 47 1 8.7857 -1.6552 3.5154 48 1 8.7983 -0.1472 4.5319 49 1 6.7437 -1.3320 2.4254 50 1 5.6510 -2.4681 3.2758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053854099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:07 Heat of formation + Delta-G solvation = -71.568054 kcal Electronic energy + Delta-G solvation = -30681.580225 eV Core-core repulsion = 26517.400110 eV Total energy + Delta-G solvation = -4164.180115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85203 -41.16511 -39.65887 -37.79715 -37.04711 -35.65030 -34.14284 -33.09562 -31.84628 -31.42433 -29.76598 -27.68944 -27.38463 -26.70848 -25.90167 -23.96440 -23.13904 -22.83016 -21.94147 -21.09072 -20.62372 -18.79011 -18.62028 -17.85963 -17.54646 -17.16387 -16.90525 -16.63729 -16.46647 -16.10159 -16.06040 -15.77686 -15.51448 -15.33964 -15.13492 -14.87994 -14.70695 -14.49892 -14.23959 -14.04819 -13.57849 -13.27687 -13.22533 -13.05032 -12.91778 -12.88160 -12.72821 -12.70955 -12.59806 -12.39189 -12.31880 -11.91037 -11.72497 -11.59303 -11.58013 -11.40280 -11.05957 -10.90859 -10.63475 -10.50799 -10.09533 -9.43458 -8.92076 -7.90198 -5.22506 1.43374 1.43798 1.47989 1.53658 1.84226 2.47120 2.62939 2.82429 2.95708 3.27169 3.37210 3.55449 3.61683 3.66689 3.71987 3.74525 3.90777 3.92315 4.06503 4.11051 4.17972 4.23137 4.35764 4.41366 4.53869 4.61257 4.63315 4.65218 4.67472 4.73223 4.74843 4.82140 4.89223 4.92070 4.92504 4.95781 4.97192 5.05716 5.14422 5.23612 5.31746 5.41393 5.51438 5.77811 5.93100 5.93778 6.04232 6.18278 6.46631 6.92345 7.14394 7.60588 8.55393 9.26631 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.002253 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.289544 B =12422.530171 C =13104.672840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.020 3.980 5 C 0.055 3.945 6 O -0.389 6.389 7 C 0.078 3.922 8 C 0.038 3.962 9 H 0.088 0.912 10 C 0.524 3.476 11 O -0.552 6.552 12 N -0.704 5.704 13 C 0.130 3.870 14 H 0.099 0.901 15 C 0.034 3.966 16 O -0.369 6.369 17 C 0.076 3.924 18 C 0.122 3.878 19 N -0.641 5.641 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.274 1.274 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.151 3.849 29 C -0.131 4.131 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.417 0.583 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.248 0.752 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 4.035 -19.702 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 N -0.259 5.259 4 C -0.107 4.107 5 C -0.021 4.021 6 O -0.308 6.308 7 C 0.000 4.000 8 C -0.074 4.074 9 H 0.106 0.894 10 C 0.309 3.691 11 O -0.429 6.429 12 N -0.358 5.358 13 C 0.024 3.976 14 H 0.117 0.883 15 C -0.043 4.043 16 O -0.288 6.288 17 C 0.035 3.965 18 C -0.003 4.003 19 N -0.368 5.368 20 C -0.363 4.363 21 H 0.098 0.902 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.200 1.200 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.026 3.974 29 C -0.170 4.170 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.122 0.878 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.826 4.458 -18.480 28.198 hybrid contribution 1.670 -0.611 0.190 1.788 sum -19.156 3.846 -18.290 26.764 Atomic orbital electron populations 1.21676 0.93540 1.02150 1.02204 1.22157 0.97542 0.87630 1.00549 1.62018 1.14339 1.18997 1.30573 1.22942 1.03532 0.95566 0.88670 1.22930 0.81593 0.95320 1.02282 1.88020 1.27349 1.78727 1.36677 1.22557 1.02407 0.88680 0.86381 1.22272 0.91902 0.99153 0.94091 0.89409 1.20541 0.81855 0.77608 0.89061 1.90730 1.42575 1.58183 1.51370 1.45875 1.15677 1.57960 1.16287 1.22320 0.99456 0.92633 0.83176 0.88274 1.24055 0.95816 0.93864 0.90612 1.88856 1.69729 1.38987 1.31184 1.23392 0.92958 0.88707 0.91420 1.22947 0.85301 0.94494 0.97569 1.46192 1.15834 1.49852 1.24914 1.19350 0.94689 1.20752 1.01511 0.90160 1.25621 1.00106 0.99619 1.00830 1.69987 1.25397 1.31403 1.33426 0.85144 0.78147 0.77553 0.78438 1.20026 1.21820 1.20634 1.22625 0.90955 0.95508 0.88317 1.22967 0.96289 1.00376 0.97319 0.93371 0.91422 0.91341 0.93512 0.92295 0.87500 0.93042 0.92439 0.85785 0.92750 0.86343 0.74490 0.91695 0.88927 0.93277 0.90524 0.94300 0.94262 0.94454 0.87819 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.96 71.98 0.72 -1.21 16 2 C 0.05 0.79 5.36 86.30 0.46 1.25 16 3 N -0.53 -8.99 4.23 -874.39 -3.70 -12.69 16 4 C 0.02 0.24 5.46 86.32 0.47 0.71 16 5 C 0.06 0.67 7.01 72.02 0.50 1.18 16 6 O -0.39 -6.57 10.83 -148.98 -1.61 -8.19 16 7 C 0.08 1.28 6.27 72.01 0.45 1.73 16 8 C 0.04 0.63 2.38 44.18 0.10 0.73 16 9 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 10 C 0.52 11.01 5.74 87.65 0.50 11.51 16 11 O -0.55 -16.20 15.24 -3.05 -0.05 -16.24 16 12 N -0.70 -12.73 5.19 -436.00 -2.26 -15.00 16 13 C 0.13 3.09 3.51 46.38 0.16 3.25 16 14 H 0.10 2.57 7.54 -2.39 -0.02 2.56 16 15 C 0.03 1.03 7.42 72.68 0.54 1.57 16 16 O -0.37 -14.90 11.29 -148.98 -1.68 -16.58 16 17 C 0.08 2.83 1.53 -10.45 -0.02 2.81 16 18 C 0.12 4.95 8.34 86.22 0.72 5.67 16 19 N -0.64 -34.06 3.70 -733.88 -2.72 -36.78 16 20 C -0.23 -13.72 10.70 84.03 0.90 -12.82 16 21 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 23 N -0.95 -58.70 11.39 21.65 0.25 -58.46 16 24 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 28 C 0.15 7.16 6.90 86.22 0.59 7.76 16 29 C -0.13 -3.17 6.22 31.43 0.20 -2.98 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.72 6.72 -2.38 -0.02 0.70 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.62 8.05 -2.39 -0.02 0.60 16 34 H 0.06 1.23 5.97 -2.39 -0.01 1.21 16 35 H 0.11 0.94 6.62 -2.39 -0.02 0.92 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.42 5.24 8.41 -92.71 -0.78 4.46 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 46 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 47 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 48 H 0.04 2.05 7.18 -2.39 -0.02 2.03 16 49 H 0.10 2.13 7.52 -2.39 -0.02 2.11 16 50 H 0.11 2.20 7.93 -2.39 -0.02 2.18 16 Total: -1.00 -78.23 392.85 -2.81 -81.05 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.16 Total: 16.26 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.78 Total: 17.56 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -8.43 Total: -122.93 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -3.34 Total: -41.01 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.23 -2.81 -81.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053854099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.478 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds