Wall clock time and date at job start Tue Mar 31 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46893 * 2 1 4 4 C 1.50700 * 109.47603 * 120.00432 * 2 1 3 5 5 O 1.21281 * 119.99620 * 109.02613 * 4 2 1 6 6 N 1.34777 * 119.99674 * 289.03091 * 4 2 1 7 7 C 1.46509 * 119.99409 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.96888 * 322.30512 * 7 6 4 9 9 C 1.55010 * 111.10549 * 86.45185 * 7 6 4 10 10 O 1.43912 * 105.18448 * 81.91404 * 9 7 6 11 11 C 1.42395 * 109.55423 * 24.29471 * 10 9 7 12 12 C 1.52696 * 116.14191 * 129.84377 * 11 10 9 13 13 N 1.47216 * 87.79549 * 90.70291 * 12 11 10 14 14 C 1.36934 * 135.97388 * 206.45619 * 13 12 11 15 15 H 1.08000 * 120.00020 * 7.28157 * 14 13 12 16 16 C 1.38808 * 120.00011 * 187.27602 * 14 13 12 17 17 N 1.31623 * 120.00208 * 172.49367 * 16 14 13 18 18 Si 1.86809 * 120.00080 * 352.21881 * 16 14 13 19 19 H 1.48496 * 109.47137 * 175.18889 * 18 16 14 20 20 H 1.48498 * 109.47018 * 295.19001 * 18 16 14 21 21 H 1.48503 * 109.46739 * 55.18782 * 18 16 14 22 22 C 1.47215 * 88.05462 * 26.71173 * 13 12 11 23 23 C 1.53664 * 108.53349 * 358.08400 * 11 10 9 24 24 N 1.46902 * 109.47309 * 240.00852 * 2 1 3 25 25 C 1.47020 * 111.00010 * 76.46857 * 24 2 1 26 26 C 1.53091 * 109.25639 * 177.61020 * 25 24 2 27 27 O 1.43014 * 109.26057 * 56.85285 * 26 25 24 28 28 C 1.43019 * 113.73660 * 301.33052 * 27 26 25 29 29 C 1.47014 * 110.99535 * 312.84046 * 24 2 1 30 30 H 1.08993 * 109.47106 * 59.99712 * 1 2 3 31 31 H 1.09001 * 109.46484 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46759 * 299.98763 * 1 2 3 33 33 H 0.96997 * 120.00236 * 359.97438 * 6 4 2 34 34 H 1.09004 * 110.30195 * 322.98637 * 9 7 6 35 35 H 1.09001 * 110.30258 * 200.84233 * 9 7 6 36 36 H 1.08995 * 113.50105 * 335.97416 * 12 11 10 37 37 H 1.09002 * 113.55783 * 205.43720 * 12 11 10 38 38 H 0.96993 * 119.99939 * 354.59397 * 17 16 14 39 39 H 1.09000 * 113.50075 * 88.01652 * 22 13 12 40 40 H 1.08994 * 113.49818 * 218.56252 * 22 13 12 41 41 H 1.08996 * 110.93075 * 97.29850 * 23 11 10 42 42 H 1.09005 * 110.93036 * 220.96520 * 23 11 10 43 43 H 1.09000 * 109.50600 * 297.54907 * 25 24 2 44 44 H 1.09002 * 109.50358 * 57.67715 * 25 24 2 45 45 H 1.09003 * 109.50970 * 296.91710 * 26 25 24 46 46 H 1.09002 * 109.54668 * 176.80958 * 26 25 24 47 47 H 1.08999 * 109.50377 * 298.73199 * 28 27 26 48 48 H 1.09003 * 109.54513 * 178.62875 * 28 27 26 49 49 H 1.08995 * 109.50691 * 302.32455 * 29 24 2 50 50 H 1.09003 * 109.51258 * 62.45755 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.5575 -1.7992 1.1300 6 7 1.8983 -0.1360 2.4422 7 6 2.3863 -0.8271 3.6384 8 1 2.2088 -1.9002 3.5685 9 6 3.8864 -0.5242 3.8850 10 8 3.9086 0.7494 4.5547 11 6 2.6662 0.9611 5.2175 12 6 2.7486 1.3781 6.6841 13 7 2.7533 2.7775 6.2271 14 6 3.2259 3.9690 6.7088 15 1 3.8424 3.9867 7.5953 16 6 2.9126 5.1541 6.0575 17 7 3.2399 6.3087 6.5983 18 14 2.0335 5.1104 4.4098 19 1 1.7125 6.4960 3.9830 20 1 2.9116 4.4714 3.3970 21 1 0.7774 4.3288 4.5396 22 6 2.0216 2.3359 5.0284 23 6 1.7472 -0.2355 4.9265 24 7 2.0197 -0.6923 -1.1995 25 6 1.8926 0.1616 -2.3895 26 6 2.4677 -0.5740 -3.6027 27 8 1.7926 -1.8250 -3.7595 28 6 1.8964 -2.6821 -2.6192 29 6 1.3155 -1.9677 -1.3960 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.4787 0.7348 2.5224 34 1 4.4206 -0.4623 2.9369 35 1 4.3281 -1.2927 4.5193 36 1 3.6764 1.0766 7.1702 37 1 1.8637 1.1129 7.2628 38 1 3.6287 6.3353 7.4865 39 1 0.9393 2.3297 5.1574 40 1 2.3355 2.8431 4.1162 41 1 1.7773 -0.9572 5.7427 42 1 0.7257 0.0948 4.7380 43 1 0.8407 0.3867 -2.5653 44 1 2.4426 1.0895 -2.2321 45 1 3.5323 -0.7516 -3.4497 46 1 2.3248 0.0313 -4.4978 47 1 2.9443 -2.9209 -2.4376 48 1 1.3400 -3.6014 -2.8022 49 1 1.4441 -2.5943 -0.5135 50 1 0.2543 -1.7768 -1.5560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054025577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:19 Heat of formation + Delta-G solvation = -34.479668 kcal Electronic energy + Delta-G solvation = -31238.597139 eV Core-core repulsion = 27076.025298 eV Total energy + Delta-G solvation = -4162.571842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.90328 -40.18172 -38.99306 -36.79782 -36.14421 -34.45591 -32.37740 -31.82288 -31.45995 -30.28331 -28.48973 -27.05138 -25.75119 -25.50903 -24.55138 -24.36473 -21.96249 -21.17084 -20.74397 -20.00521 -19.35869 -17.56861 -17.45940 -17.19129 -16.58836 -16.26690 -15.95406 -15.54849 -15.39966 -15.23927 -15.04054 -14.78126 -14.73231 -14.23598 -13.96307 -13.78323 -13.61308 -13.37139 -13.09705 -12.87185 -12.74661 -12.67056 -12.45066 -12.12779 -11.99351 -11.75859 -11.65250 -11.54817 -11.39644 -11.15155 -10.85023 -10.82847 -10.51819 -10.37810 -10.18944 -9.80176 -9.66027 -9.23930 -9.17706 -8.89234 -8.74448 -8.65266 -7.18304 -6.29064 -3.21659 2.44672 2.77385 3.33124 3.41923 3.47432 3.61808 3.62125 3.90660 4.27866 4.41796 4.48226 4.59228 4.61149 4.67615 4.72027 4.78972 4.80384 4.81202 4.85004 4.90393 4.98513 5.00845 5.17112 5.24612 5.29636 5.32278 5.39269 5.45422 5.46732 5.55473 5.63626 5.66855 5.68765 5.70994 5.72574 5.82890 6.08530 6.14030 6.21095 6.32485 6.38794 6.42102 6.50175 6.59953 6.84033 7.09778 7.33148 7.47314 8.07003 8.24409 8.98064 9.49979 10.35392 11.21155 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002970 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.462750 B = 9424.242699 C =10509.026634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 H 0.109 0.891 4 C 0.526 3.474 5 O -0.526 6.526 6 N -0.716 5.716 7 C 0.113 3.887 8 H 0.106 0.894 9 C 0.039 3.961 10 O -0.335 6.335 11 C 0.066 3.934 12 C 0.116 3.884 13 N -0.620 5.620 14 C -0.298 4.298 15 H 0.083 0.917 16 C -0.026 4.026 17 N -0.935 5.935 18 Si 1.069 2.931 19 H -0.295 1.295 20 H -0.292 1.292 21 H -0.288 1.288 22 C 0.094 3.906 23 C -0.145 4.145 24 N -0.514 5.514 25 C 0.015 3.985 26 C 0.065 3.935 27 O -0.389 6.389 28 C 0.065 3.935 29 C 0.012 3.988 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 -18.478 -16.760 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.051 4.051 3 H 0.127 0.873 4 C 0.311 3.689 5 O -0.401 6.401 6 N -0.369 5.369 7 C 0.008 3.992 8 H 0.124 0.876 9 C -0.039 4.039 10 O -0.253 6.253 11 C 0.025 3.975 12 C -0.011 4.011 13 N -0.347 5.347 14 C -0.425 4.425 15 H 0.101 0.899 16 C -0.225 4.225 17 N -0.578 5.578 18 Si 0.902 3.098 19 H -0.223 1.223 20 H -0.220 1.220 21 H -0.216 1.216 22 C -0.032 4.032 23 C -0.184 4.184 24 N -0.238 5.238 25 C -0.113 4.113 26 C -0.012 4.012 27 O -0.307 6.307 28 C -0.012 4.012 29 C -0.116 4.116 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.848 -18.075 -18.057 26.451 hybrid contribution -0.467 -0.265 1.651 1.736 sum -7.314 -18.340 -16.406 25.671 Atomic orbital electron populations 1.22394 0.94698 1.03404 1.03624 1.21662 0.94657 0.99029 0.89727 0.87279 1.20343 0.78538 0.85999 0.83978 1.90650 1.42747 1.20739 1.85966 1.45916 1.61925 1.23123 1.05900 1.22561 0.94240 0.98021 0.84354 0.87638 1.23893 0.95669 0.86865 0.97500 1.88465 1.33493 1.35499 1.67857 1.23262 0.84502 0.93954 0.95798 1.22648 0.99474 0.86027 0.92960 1.45799 1.65019 1.03712 1.20202 1.20135 1.28548 0.81590 1.12190 0.89911 1.25693 1.00729 0.90714 1.05338 1.70906 1.45043 1.24334 1.17471 0.83748 0.75837 0.74329 0.75927 1.22258 1.21997 1.21571 1.23122 0.95663 0.91384 0.93061 1.23249 1.00416 0.98214 0.96538 1.62041 1.56244 1.04098 1.01428 1.22865 1.00612 0.97088 0.90715 1.22642 0.96508 0.84943 0.97094 1.87967 1.75576 1.28275 1.38889 1.22666 1.01317 0.92758 0.84448 1.22989 0.96006 0.91906 1.00655 0.91211 0.91318 0.90921 0.76177 0.89562 0.91314 0.93000 0.93360 0.92936 0.92824 0.92640 0.88562 0.89126 0.93563 0.89339 0.92123 0.88381 0.92090 0.88555 0.87853 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.27 37.16 0.31 -1.05 16 2 C 0.06 0.58 2.70 -68.86 -0.19 0.39 16 3 H 0.11 0.95 7.92 -51.93 -0.41 0.54 16 4 C 0.53 6.11 6.96 -10.99 -0.08 6.03 16 5 O -0.53 -7.53 14.21 5.56 0.08 -7.45 16 6 N -0.72 -7.92 5.24 -51.50 -0.27 -8.19 16 7 C 0.11 1.30 3.37 -65.54 -0.22 1.08 16 8 H 0.11 1.13 7.74 -51.93 -0.40 0.73 16 9 C 0.04 0.53 7.49 38.22 0.29 0.82 16 10 O -0.33 -6.16 11.18 -35.23 -0.39 -6.55 16 11 C 0.07 1.12 1.75 -90.43 -0.16 0.96 16 12 C 0.12 2.26 8.20 -8.06 -0.07 2.19 16 13 N -0.62 -15.40 3.70 -184.56 -0.68 -16.08 16 14 C -0.30 -8.77 11.07 -15.06 -0.17 -8.93 16 15 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 16 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 17 N -0.94 -29.83 13.70 55.49 0.76 -29.07 16 18 Si 1.07 26.57 25.14 -169.99 -4.27 22.29 16 19 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.29 -6.98 6.64 56.52 0.38 -6.60 16 21 H -0.29 -6.42 6.09 56.52 0.34 -6.07 16 22 C 0.09 1.90 5.18 -7.90 -0.04 1.86 16 23 C -0.15 -1.68 5.97 -25.07 -0.15 -1.83 16 24 N -0.51 -5.12 4.38 -227.71 -1.00 -6.11 16 25 C 0.02 0.12 5.45 -3.71 -0.02 0.10 16 26 C 0.07 0.53 7.01 37.20 0.26 0.79 16 27 O -0.39 -3.91 10.83 -35.23 -0.38 -4.29 16 28 C 0.07 0.59 7.01 37.21 0.26 0.85 16 29 C 0.01 0.12 4.47 -3.71 -0.02 0.10 16 30 H 0.07 0.47 7.02 -51.93 -0.36 0.11 16 31 H 0.07 0.53 6.37 -51.93 -0.33 0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 4.14 8.62 -40.82 -0.35 3.79 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 38 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 39 H 0.05 1.00 7.47 -51.93 -0.39 0.62 16 40 H 0.06 1.19 4.74 -51.93 -0.25 0.95 16 41 H 0.10 0.94 8.13 -51.93 -0.42 0.52 16 42 H 0.09 0.92 7.81 -51.93 -0.41 0.52 16 43 H 0.05 0.36 7.01 -51.93 -0.36 0.00 16 44 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.13 6.11 -51.93 -0.32 0.81 16 50 H 0.04 0.39 6.37 -51.93 -0.33 0.06 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -36.15 382.01 -8.70 -44.85 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.21 Total: 2.37 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.08 Total: 2.48 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.19 Total: -59.46 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.70 Total: -18.29 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.27 Total: 22.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.15 -8.70 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054025577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.370 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds