Wall clock time and date at job start Tue Mar 31 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46893 * 2 1 4 4 C 1.50700 * 109.47603 * 120.00432 * 2 1 3 5 5 O 1.21281 * 119.99620 * 109.02613 * 4 2 1 6 6 N 1.34777 * 119.99674 * 289.03091 * 4 2 1 7 7 C 1.46509 * 119.99409 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.96888 * 322.30512 * 7 6 4 9 9 C 1.55010 * 111.10549 * 86.45185 * 7 6 4 10 10 O 1.43912 * 105.18448 * 81.91404 * 9 7 6 11 11 C 1.42395 * 109.55423 * 24.29471 * 10 9 7 12 12 C 1.52696 * 116.14191 * 129.84377 * 11 10 9 13 13 N 1.47216 * 87.79549 * 90.70291 * 12 11 10 14 14 C 1.36934 * 135.97388 * 206.45619 * 13 12 11 15 15 H 1.08000 * 120.00020 * 7.28157 * 14 13 12 16 16 C 1.38808 * 120.00011 * 187.27602 * 14 13 12 17 17 N 1.31623 * 120.00208 * 172.49367 * 16 14 13 18 18 Si 1.86809 * 120.00080 * 352.21881 * 16 14 13 19 19 H 1.48496 * 109.47137 * 175.18889 * 18 16 14 20 20 H 1.48498 * 109.47018 * 295.19001 * 18 16 14 21 21 H 1.48503 * 109.46739 * 55.18782 * 18 16 14 22 22 C 1.47215 * 88.05462 * 26.71173 * 13 12 11 23 23 C 1.53664 * 108.53349 * 358.08400 * 11 10 9 24 24 N 1.46902 * 109.47309 * 240.00852 * 2 1 3 25 25 C 1.47020 * 111.00010 * 76.46857 * 24 2 1 26 26 C 1.53091 * 109.25639 * 177.61020 * 25 24 2 27 27 O 1.43014 * 109.26057 * 56.85285 * 26 25 24 28 28 C 1.43019 * 113.73660 * 301.33052 * 27 26 25 29 29 C 1.47014 * 110.99535 * 312.84046 * 24 2 1 30 30 H 1.08993 * 109.47106 * 59.99712 * 1 2 3 31 31 H 1.09001 * 109.46484 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46759 * 299.98763 * 1 2 3 33 33 H 0.96997 * 120.00236 * 359.97438 * 6 4 2 34 34 H 1.09004 * 110.30195 * 322.98637 * 9 7 6 35 35 H 1.09001 * 110.30258 * 200.84233 * 9 7 6 36 36 H 1.08995 * 113.50105 * 335.97416 * 12 11 10 37 37 H 1.09002 * 113.55783 * 205.43720 * 12 11 10 38 38 H 0.96993 * 119.99939 * 354.59397 * 17 16 14 39 39 H 1.09000 * 113.50075 * 88.01652 * 22 13 12 40 40 H 1.08994 * 113.49818 * 218.56252 * 22 13 12 41 41 H 1.08996 * 110.93075 * 97.29850 * 23 11 10 42 42 H 1.09005 * 110.93036 * 220.96520 * 23 11 10 43 43 H 1.09000 * 109.50600 * 297.54907 * 25 24 2 44 44 H 1.09002 * 109.50358 * 57.67715 * 25 24 2 45 45 H 1.09003 * 109.50970 * 296.91710 * 26 25 24 46 46 H 1.09002 * 109.54668 * 176.80958 * 26 25 24 47 47 H 1.08999 * 109.50377 * 298.73199 * 28 27 26 48 48 H 1.09003 * 109.54513 * 178.62875 * 28 27 26 49 49 H 1.08995 * 109.50691 * 302.32455 * 29 24 2 50 50 H 1.09003 * 109.51258 * 62.45755 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.5575 -1.7992 1.1300 6 7 1.8983 -0.1360 2.4422 7 6 2.3863 -0.8271 3.6384 8 1 2.2088 -1.9002 3.5685 9 6 3.8864 -0.5242 3.8850 10 8 3.9086 0.7494 4.5547 11 6 2.6662 0.9611 5.2175 12 6 2.7486 1.3781 6.6841 13 7 2.7533 2.7775 6.2271 14 6 3.2259 3.9690 6.7088 15 1 3.8424 3.9867 7.5953 16 6 2.9126 5.1541 6.0575 17 7 3.2399 6.3087 6.5983 18 14 2.0335 5.1104 4.4098 19 1 1.7125 6.4960 3.9830 20 1 2.9116 4.4714 3.3970 21 1 0.7774 4.3288 4.5396 22 6 2.0216 2.3359 5.0284 23 6 1.7472 -0.2355 4.9265 24 7 2.0197 -0.6923 -1.1995 25 6 1.8926 0.1616 -2.3895 26 6 2.4677 -0.5740 -3.6027 27 8 1.7926 -1.8250 -3.7595 28 6 1.8964 -2.6821 -2.6192 29 6 1.3155 -1.9677 -1.3960 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.4787 0.7348 2.5224 34 1 4.4206 -0.4623 2.9369 35 1 4.3281 -1.2927 4.5193 36 1 3.6764 1.0766 7.1702 37 1 1.8637 1.1129 7.2628 38 1 3.6287 6.3353 7.4865 39 1 0.9393 2.3297 5.1574 40 1 2.3355 2.8431 4.1162 41 1 1.7773 -0.9572 5.7427 42 1 0.7257 0.0948 4.7380 43 1 0.8407 0.3867 -2.5653 44 1 2.4426 1.0895 -2.2321 45 1 3.5323 -0.7516 -3.4497 46 1 2.3248 0.0313 -4.4978 47 1 2.9443 -2.9209 -2.4376 48 1 1.3400 -3.6014 -2.8022 49 1 1.4441 -2.5943 -0.5135 50 1 0.2543 -1.7768 -1.5560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054025577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:18 Heat of formation + Delta-G solvation = -65.409736 kcal Electronic energy + Delta-G solvation = -31239.938368 eV Core-core repulsion = 27076.025298 eV Total energy + Delta-G solvation = -4163.913070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.92319 -41.17704 -39.88464 -38.14302 -36.96762 -35.48536 -34.52452 -32.63476 -32.14122 -31.29004 -30.00899 -27.68759 -27.30101 -27.05540 -25.32564 -25.02466 -23.37280 -22.43507 -21.60315 -20.84238 -20.73246 -19.56438 -18.29624 -18.13009 -17.51350 -17.37052 -16.93406 -16.51074 -16.34754 -16.18731 -16.02273 -15.82595 -15.69692 -15.40212 -15.27927 -15.12596 -14.88186 -14.60963 -14.43982 -14.09356 -13.53848 -13.47931 -13.28746 -13.07059 -12.84251 -12.79448 -12.69927 -12.59826 -12.46673 -12.29040 -12.24129 -12.03578 -11.83632 -11.51437 -11.42479 -11.23938 -11.01556 -10.94743 -10.50893 -10.38837 -9.97375 -9.32917 -9.22982 -8.62748 -5.46225 1.34550 1.49623 1.59763 1.69154 1.98869 2.56846 2.67727 2.79246 2.98243 3.02023 3.21209 3.38757 3.52551 3.65984 3.68096 3.85922 3.96516 3.99007 4.04205 4.13993 4.18237 4.30149 4.32893 4.35370 4.51498 4.59664 4.61912 4.63982 4.65418 4.69573 4.70423 4.74132 4.76675 4.79101 4.85767 4.88931 4.91401 4.96867 4.97020 5.00533 5.14973 5.21572 5.47608 5.83059 5.94387 5.94596 6.17801 6.21976 6.52368 6.69708 7.22895 7.32604 8.27368 8.89374 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002970 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.462750 B = 9424.242699 C =10509.026634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.061 3.939 3 H 0.117 0.883 4 C 0.525 3.475 5 O -0.556 6.556 6 N -0.713 5.713 7 C 0.123 3.877 8 H 0.121 0.879 9 C 0.034 3.966 10 O -0.373 6.373 11 C 0.084 3.916 12 C 0.109 3.891 13 N -0.660 5.660 14 C -0.289 4.289 15 H 0.042 0.958 16 C -0.091 4.091 17 N -0.973 5.973 18 Si 1.111 2.889 19 H -0.306 1.306 20 H -0.281 1.281 21 H -0.241 1.241 22 C 0.086 3.914 23 C -0.128 4.128 24 N -0.533 5.533 25 C 0.017 3.983 26 C 0.061 3.939 27 O -0.402 6.402 28 C 0.065 3.935 29 C 0.019 3.981 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.118 0.882 47 H 0.049 0.951 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -20.562 -18.550 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.050 4.050 3 H 0.135 0.865 4 C 0.312 3.688 5 O -0.434 6.434 6 N -0.365 5.365 7 C 0.017 3.983 8 H 0.138 0.862 9 C -0.043 4.043 10 O -0.292 6.292 11 C 0.043 3.957 12 C -0.016 4.016 13 N -0.389 5.389 14 C -0.416 4.416 15 H 0.060 0.940 16 C -0.282 4.282 17 N -0.618 5.618 18 Si 0.936 3.064 19 H -0.234 1.234 20 H -0.208 1.208 21 H -0.165 1.165 22 C -0.039 4.039 23 C -0.166 4.166 24 N -0.258 5.258 25 C -0.110 4.110 26 C -0.015 4.015 27 O -0.321 6.321 28 C -0.012 4.012 29 C -0.109 4.109 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.071 0.929 46 H 0.136 0.864 47 H 0.067 0.933 48 H 0.130 0.870 49 H 0.106 0.894 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.544 -20.225 -19.834 29.892 hybrid contribution 0.524 0.294 2.286 2.364 sum -9.020 -19.931 -17.548 28.045 Atomic orbital electron populations 1.22345 0.92938 1.03435 1.04675 1.21702 0.95982 0.98821 0.88523 0.86507 1.20759 0.77814 0.85626 0.84641 1.90641 1.44150 1.22188 1.86422 1.45928 1.61571 1.23305 1.05723 1.22503 0.92287 0.98882 0.84593 0.86150 1.24058 0.97735 0.85578 0.96944 1.88437 1.34656 1.37800 1.68312 1.22958 0.84958 0.94604 0.93149 1.22972 1.00025 0.83208 0.95434 1.45923 1.66036 1.03974 1.22924 1.19968 1.27059 0.84218 1.10402 0.93958 1.27230 1.01893 0.90233 1.08861 1.71021 1.47805 1.25886 1.17138 0.83303 0.76946 0.74546 0.71645 1.23400 1.20840 1.16521 1.23449 0.96907 0.92925 0.90587 1.23239 1.00123 0.96090 0.97168 1.62013 1.56917 1.04635 1.02254 1.22894 1.01182 0.97053 0.89916 1.22792 0.95972 0.84622 0.98163 1.87947 1.75828 1.29038 1.39325 1.22714 1.00899 0.93318 0.84288 1.22875 0.96364 0.91695 0.99961 0.90330 0.91765 0.89685 0.75468 0.90808 0.89746 0.94481 0.90145 0.94733 0.89737 0.93686 0.85823 0.86501 0.92824 0.88454 0.92881 0.86383 0.93262 0.86992 0.89406 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.27 71.98 0.60 -1.43 16 2 C 0.06 1.00 2.70 44.17 0.12 1.12 16 3 H 0.12 1.70 7.92 -2.38 -0.02 1.68 16 4 C 0.52 10.89 6.96 87.66 0.61 11.50 16 5 O -0.56 -15.02 14.21 -3.03 -0.04 -15.06 16 6 N -0.71 -13.25 5.24 -435.24 -2.28 -15.53 16 7 C 0.12 2.34 3.37 46.53 0.16 2.50 16 8 H 0.12 2.07 7.74 -2.39 -0.02 2.05 16 9 C 0.03 0.86 7.49 72.67 0.54 1.41 16 10 O -0.37 -13.05 11.18 -148.98 -1.67 -14.72 16 11 C 0.08 2.58 1.75 -10.67 -0.02 2.56 16 12 C 0.11 4.03 8.20 83.39 0.68 4.71 16 13 N -0.66 -32.16 3.70 -738.90 -2.73 -34.89 16 14 C -0.29 -17.41 11.07 84.03 0.93 -16.48 16 15 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 16 C -0.09 -5.60 5.50 84.86 0.47 -5.13 16 17 N -0.97 -64.47 13.70 21.65 0.30 -64.18 16 18 Si 1.11 52.81 25.14 68.60 1.72 54.54 16 19 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 20 H -0.28 -12.71 6.64 99.48 0.66 -12.05 16 21 H -0.24 -9.48 6.09 99.48 0.61 -8.88 16 22 C 0.09 3.19 5.18 83.49 0.43 3.62 16 23 C -0.13 -2.29 5.97 31.67 0.19 -2.10 16 24 N -0.53 -9.67 4.38 -874.35 -3.83 -13.50 16 25 C 0.02 0.24 5.45 86.31 0.47 0.71 16 26 C 0.06 0.90 7.01 72.01 0.50 1.40 16 27 O -0.40 -7.53 10.83 -148.98 -1.61 -9.14 16 28 C 0.06 1.10 7.01 72.01 0.50 1.60 16 29 C 0.02 0.33 4.47 86.31 0.39 0.72 16 30 H 0.08 0.79 7.02 -2.39 -0.02 0.77 16 31 H 0.06 0.81 6.37 -2.39 -0.02 0.80 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.41 6.68 8.62 -92.71 -0.80 5.88 16 34 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 38 H 0.24 16.29 8.73 -92.71 -0.81 15.48 16 39 H 0.09 2.67 7.47 -2.39 -0.02 2.65 16 40 H 0.05 1.79 4.74 -2.39 -0.01 1.77 16 41 H 0.12 1.66 8.13 -2.39 -0.02 1.64 16 42 H 0.12 1.59 7.81 -2.38 -0.02 1.57 16 43 H 0.05 0.68 7.01 -2.39 -0.02 0.67 16 44 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 1.83 6.11 -2.39 -0.01 1.81 16 50 H 0.05 0.81 6.37 -2.39 -0.02 0.79 16 Total: -1.00 -82.90 382.01 -3.61 -86.51 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.04 Total: 19.25 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 6.57 Total: 6.71 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -8.55 Total: -128.10 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -3.32 Total: -38.92 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 1.72 Total: 54.54 kcal Total: -82.90 -3.61 -86.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054025577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.103 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds