Wall clock time and date at job start Tue Mar 31 2020 22:53:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09005 * 109.47159 * 2 1
4 4 C 1.50697 * 109.47671 * 119.99982 * 2 1 3
5 5 O 1.21274 * 120.00092 * 103.54328 * 4 2 1
6 6 N 1.34778 * 119.99913 * 283.55032 * 4 2 1
7 7 C 1.46505 * 119.99925 * 179.97438 * 6 4 2
8 8 H 1.09002 * 110.76747 * 31.47547 * 7 6 4
9 9 C 1.55057 * 111.05145 * 267.80972 * 7 6 4
10 10 O 1.44600 * 103.67054 * 205.24184 * 9 7 6
11 11 C 1.42837 * 106.73691 * 39.08351 * 10 9 7
12 12 C 1.52649 * 115.96155 * 202.49484 * 11 10 9
13 13 N 1.47224 * 87.77869 * 218.40414 * 12 11 10
14 14 C 1.36939 * 135.96717 * 206.41053 * 13 12 11
15 15 H 1.07997 * 120.00217 * 350.30795 * 14 13 12
16 16 C 1.38815 * 120.00045 * 170.30831 * 14 13 12
17 17 N 1.31615 * 119.99871 * 155.77166 * 16 14 13
18 18 Si 1.86799 * 119.99809 * 335.77620 * 16 14 13
19 19 H 1.48499 * 109.47191 * 89.99995 * 18 16 14
20 20 H 1.48506 * 109.46946 * 209.99664 * 18 16 14
21 21 H 1.48493 * 109.47277 * 329.99833 * 18 16 14
22 22 C 1.47218 * 88.06588 * 26.67112 * 13 12 11
23 23 C 1.53325 * 108.32784 * 334.31785 * 11 10 9
24 24 N 1.46901 * 109.47371 * 240.00178 * 2 1 3
25 25 C 1.47014 * 111.00117 * 75.73858 * 24 2 1
26 26 C 1.53095 * 109.26008 * 177.60748 * 25 24 2
27 27 O 1.43021 * 109.25626 * 56.85427 * 26 25 24
28 28 C 1.43016 * 113.73272 * 301.32808 * 27 26 25
29 29 C 1.47011 * 110.99758 * 312.10855 * 24 2 1
30 30 H 1.09008 * 109.47204 * 299.99827 * 1 2 3
31 31 H 1.08997 * 109.47560 * 59.99663 * 1 2 3
32 32 H 1.08997 * 109.47226 * 180.02562 * 1 2 3
33 33 H 0.96995 * 120.00093 * 359.97438 * 6 4 2
34 34 H 1.08994 * 110.58497 * 323.79295 * 9 7 6
35 35 H 1.08999 * 110.57908 * 86.69757 * 9 7 6
36 36 H 1.08999 * 113.50662 * 103.68018 * 12 11 10
37 37 H 1.09008 * 113.49847 * 333.12756 * 12 11 10
38 38 H 0.97002 * 120.00217 * 5.09132 * 17 16 14
39 39 H 1.09000 * 113.50950 * 88.06126 * 22 13 12
40 40 H 1.09001 * 113.49727 * 218.60487 * 22 13 12
41 41 H 1.08999 * 110.56185 * 120.18160 * 23 11 10
42 42 H 1.08999 * 110.56107 * 242.87943 * 23 11 10
43 43 H 1.09002 * 109.50988 * 297.55180 * 25 24 2
44 44 H 1.08999 * 109.50313 * 57.67812 * 25 24 2
45 45 H 1.08993 * 109.50741 * 296.91969 * 26 25 24
46 46 H 1.08996 * 109.50931 * 176.78057 * 26 25 24
47 47 H 1.08995 * 109.50979 * 298.73304 * 28 27 26
48 48 H 1.09009 * 109.50411 * 178.60609 * 28 27 26
49 49 H 1.09003 * 109.50761 * 302.32807 * 29 24 2
50 50 H 1.09006 * 109.51100 * 62.41224 * 29 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.4665 -1.8395 1.1440
6 7 1.9993 -0.0909 2.4269
7 6 2.4872 -0.7817 3.6232
8 1 3.2956 -1.4679 3.3705
9 6 1.3349 -1.5272 4.3448
10 8 1.7869 -1.6093 5.7159
11 6 2.4271 -0.3675 6.0131
12 6 3.4281 -0.3907 7.1654
13 7 2.9271 0.9387 7.5517
14 6 3.4306 2.0263 8.2140
15 1 4.3796 1.9558 8.7248
16 6 2.7214 3.2195 8.2289
17 7 2.9133 4.0870 9.2000
18 14 1.4947 3.5939 6.8708
19 1 0.1559 3.0812 7.2579
20 1 1.4209 5.0622 6.6614
21 1 1.9321 2.9359 5.6135
22 6 1.6454 0.5842 6.9200
23 6 2.9426 0.2353 4.7010
24 7 2.0197 -0.6924 -1.1994
25 6 1.8765 0.1548 -2.3923
26 6 2.4521 -0.5801 -3.6057
27 8 1.7891 -1.8387 -3.7530
28 6 1.9087 -2.6896 -2.6097
29 6 1.3276 -1.9760 -1.3862
30 1 -0.3634 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 1.6523 0.8122 2.4960
34 1 0.4090 -0.9558 4.2801
35 1 1.2014 -2.5241 3.9250
36 1 4.4678 -0.3850 6.8382
37 1 3.2218 -1.1646 7.9048
38 1 3.6020 3.9272 9.8641
39 1 0.9553 0.0749 7.5927
40 1 1.1805 1.4127 6.3856
41 1 2.4890 1.2103 4.5233
42 1 4.0294 0.3173 4.7183
43 1 0.8213 0.3682 -2.5628
44 1 2.4178 1.0890 -2.2422
45 1 3.5192 -0.7459 -3.4583
46 1 2.2967 0.0201 -4.5022
47 1 2.9600 -2.9167 -2.4334
48 1 1.3603 -3.6151 -2.7858
49 1 1.4681 -2.5973 -0.5016
50 1 0.2634 -1.7968 -1.5398
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054025578.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:25
Heat of formation + Delta-G solvation = -36.339363 kcal
Electronic energy + Delta-G solvation = -30832.114622 eV
Core-core repulsion = 26669.462138 eV
Total energy + Delta-G solvation = -4162.652484 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.89105 -40.20273 -39.08794 -36.83617 -36.22131 -34.70270 -32.40445 -31.83500
-31.48675 -30.06925 -28.40689 -27.10942 -25.81766 -25.47609 -24.53556 -24.41341
-21.84843 -21.49323 -20.80135 -20.11295 -19.14772 -17.63890 -17.47383 -17.21906
-16.43449 -16.24067 -15.79249 -15.60573 -15.45729 -15.33803 -15.13845 -15.05455
-14.92401 -14.29581 -14.09422 -13.72559 -13.58550 -13.33991 -13.12473 -12.84177
-12.75629 -12.62539 -12.47035 -12.19084 -11.82587 -11.77086 -11.60794 -11.46255
-11.43975 -11.10561 -10.90109 -10.84669 -10.76947 -10.57386 -10.25169 -9.88561
-9.71425 -9.40181 -9.20362 -8.91327 -8.71862 -8.64154 -7.26758 -6.43040
-3.27965 2.38490 2.70847 3.29873 3.35758 3.42546 3.54682 3.57533
4.04934 4.27290 4.40900 4.50474 4.53221 4.57294 4.62549 4.72513
4.75577 4.77150 4.80315 4.84659 4.87496 4.94520 5.09189 5.13181
5.17080 5.18476 5.25524 5.34566 5.40782 5.41171 5.52237 5.62890
5.67996 5.70674 5.72063 5.94187 6.08078 6.09947 6.25110 6.27188
6.29368 6.32924 6.43888 6.53577 6.54342 6.79981 7.05225 7.25859
7.29079 8.02206 8.18623 8.89116 9.44294 10.31727 11.07492
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020545 B = 0.002528 C = 0.002369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1362.533337 B =11072.397811 C =11816.967420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.063 3.937
3 H 0.107 0.893
4 C 0.525 3.475
5 O -0.524 6.524
6 N -0.718 5.718
7 C 0.112 3.888
8 H 0.108 0.892
9 C 0.040 3.960
10 O -0.356 6.356
11 C 0.059 3.941
12 C 0.132 3.868
13 N -0.615 5.615
14 C -0.311 4.311
15 H 0.080 0.920
16 C -0.019 4.019
17 N -0.918 5.918
18 Si 1.064 2.936
19 H -0.293 1.293
20 H -0.295 1.295
21 H -0.287 1.287
22 C 0.096 3.904
23 C -0.123 4.123
24 N -0.515 5.515
25 C 0.015 3.985
26 C 0.065 3.935
27 O -0.389 6.389
28 C 0.065 3.935
29 C 0.009 3.991
30 H 0.072 0.928
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.402 0.598
34 H 0.061 0.939
35 H 0.093 0.907
36 H 0.051 0.949
37 H 0.050 0.950
38 H 0.264 0.736
39 H 0.051 0.949
40 H 0.046 0.954
41 H 0.088 0.912
42 H 0.090 0.910
43 H 0.046 0.954
44 H 0.087 0.913
45 H 0.060 0.940
46 H 0.098 0.902
47 H 0.061 0.939
48 H 0.097 0.903
49 H 0.109 0.891
50 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.845 -9.299 -25.038 27.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.049 4.049
3 H 0.125 0.875
4 C 0.310 3.690
5 O -0.399 6.399
6 N -0.371 5.371
7 C 0.007 3.993
8 H 0.126 0.874
9 C -0.039 4.039
10 O -0.272 6.272
11 C 0.017 3.983
12 C 0.005 3.995
13 N -0.345 5.345
14 C -0.437 4.437
15 H 0.098 0.902
16 C -0.220 4.220
17 N -0.559 5.559
18 Si 0.897 3.103
19 H -0.221 1.221
20 H -0.222 1.222
21 H -0.215 1.215
22 C -0.029 4.029
23 C -0.161 4.161
24 N -0.240 5.240
25 C -0.113 4.113
26 C -0.012 4.012
27 O -0.307 6.307
28 C -0.012 4.012
29 C -0.119 4.119
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.237 0.763
34 H 0.079 0.921
35 H 0.111 0.889
36 H 0.070 0.930
37 H 0.067 0.933
38 H 0.074 0.926
39 H 0.068 0.932
40 H 0.063 0.937
41 H 0.106 0.894
42 H 0.109 0.891
43 H 0.064 0.936
44 H 0.105 0.895
45 H 0.078 0.922
46 H 0.116 0.884
47 H 0.079 0.921
48 H 0.115 0.885
49 H 0.127 0.873
50 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -5.138 -9.140 -25.417 27.494
hybrid contribution 0.201 -0.125 0.783 0.818
sum -4.936 -9.265 -24.634 26.777
Atomic orbital electron populations
1.22386 0.94623 1.03597 1.03532 1.21637 0.94693 0.98802 0.89743
0.87544 1.20374 0.77945 0.86715 0.83947 1.90645 1.45169 1.18486
1.85572 1.45952 1.65051 1.19055 1.07032 1.22668 0.97429 0.94936
0.84305 0.87443 1.23874 0.96240 1.01197 0.82571 1.88809 1.75704
1.35347 1.27357 1.23620 0.95781 0.84414 0.94438 1.22443 0.95821
0.89202 0.92036 1.45578 1.08632 1.11904 1.68432 1.19913 1.07619
0.87611 1.28591 0.90208 1.25739 1.02411 0.92610 1.01192 1.70919
1.31679 1.41422 1.11890 0.83749 0.75430 0.74962 0.76152 1.22069
1.22241 1.21485 1.23050 0.91406 0.94892 0.93599 1.22703 1.03088
0.98695 0.91640 1.62069 1.56592 1.03961 1.01333 1.22858 1.00524
0.97109 0.90770 1.22636 0.96657 0.84843 0.97069 1.87973 1.75843
1.27858 1.39033 1.22680 1.01291 0.92909 0.84322 1.23064 0.96095
0.91720 1.00997 0.90945 0.91227 0.91203 0.76281 0.92109 0.88902
0.93032 0.93257 0.92559 0.93188 0.93655 0.89377 0.89138 0.93573
0.89475 0.92157 0.88419 0.92090 0.88474 0.87296 0.93795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.23 8.29 37.15 0.31 -0.92 16
2 C 0.06 0.52 2.70 -68.87 -0.19 0.34 16
3 H 0.11 0.71 7.93 -51.93 -0.41 0.30 16
4 C 0.52 5.75 7.00 -10.99 -0.08 5.68 16
5 O -0.52 -7.45 13.88 5.56 0.08 -7.37 16
6 N -0.72 -7.46 5.20 -51.72 -0.27 -7.73 16
7 C 0.11 1.43 3.51 -65.77 -0.23 1.20 16
8 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16
9 C 0.04 0.53 7.43 38.24 0.28 0.81 16
10 O -0.36 -5.96 11.32 -35.23 -0.40 -6.36 16
11 C 0.06 1.05 1.66 -90.66 -0.15 0.90 16
12 C 0.13 2.65 8.20 -8.04 -0.07 2.59 16
13 N -0.62 -14.99 3.52 -184.62 -0.65 -15.64 16
14 C -0.31 -8.80 10.94 -15.06 -0.16 -8.96 16
15 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16
16 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16
17 N -0.92 -28.31 13.70 55.49 0.76 -27.55 16
18 Si 1.06 25.53 25.29 -169.99 -4.30 21.24 16
19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
21 H -0.29 -6.12 5.61 56.52 0.32 -5.80 16
22 C 0.10 2.05 6.76 -7.89 -0.05 1.99 16
23 C -0.12 -1.87 6.20 -25.49 -0.16 -2.03 16
24 N -0.51 -4.69 4.44 -227.72 -1.01 -5.70 16
25 C 0.02 0.11 5.44 -3.71 -0.02 0.09 16
26 C 0.07 0.48 7.01 37.21 0.26 0.74 16
27 O -0.39 -3.72 10.83 -35.23 -0.38 -4.10 16
28 C 0.06 0.57 7.01 37.21 0.26 0.83 16
29 C 0.01 0.08 4.51 -3.71 -0.02 0.06 16
30 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16
31 H 0.07 0.41 6.99 -51.93 -0.36 0.05 16
32 H 0.07 0.53 6.37 -51.93 -0.33 0.20 16
33 H 0.40 3.39 8.41 -40.82 -0.34 3.04 16
34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16
37 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16
38 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16
39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
40 H 0.05 0.96 3.66 -51.93 -0.19 0.77 16
41 H 0.09 1.37 6.38 -51.93 -0.33 1.04 16
42 H 0.09 1.38 7.81 -51.93 -0.41 0.98 16
43 H 0.05 0.32 6.98 -51.93 -0.36 -0.05 16
44 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16
45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
48 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16
49 H 0.11 1.19 5.87 -51.93 -0.30 0.89 16
50 H 0.04 0.38 6.36 -51.93 -0.33 0.05 16
LS Contribution 380.48 15.07 5.73 5.73
Total: -1.00 -33.69 380.48 -8.60 -42.29
By element:
Atomic # 1 Polarization: 10.57 SS G_CDS: -8.06 Total: 2.52 kcal
Atomic # 6 Polarization: 2.77 SS G_CDS: -0.11 Total: 2.67 kcal
Atomic # 7 Polarization: -55.45 SS G_CDS: -1.17 Total: -56.62 kcal
Atomic # 8 Polarization: -17.13 SS G_CDS: -0.70 Total: -17.83 kcal
Atomic # 14 Polarization: 25.53 SS G_CDS: -4.30 Total: 21.24 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -33.69 -8.60 -42.29 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054025578.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.953 kcal
(2) G-P(sol) polarization free energy of solvation -33.691 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds