Wall clock time and date at job start Tue Mar 31 2020 22:53:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09005 * 109.47159 * 2 1
4 4 C 1.50697 * 109.47671 * 119.99982 * 2 1 3
5 5 O 1.21274 * 120.00092 * 103.54328 * 4 2 1
6 6 N 1.34778 * 119.99913 * 283.55032 * 4 2 1
7 7 C 1.46505 * 119.99925 * 179.97438 * 6 4 2
8 8 H 1.09002 * 110.76747 * 31.47547 * 7 6 4
9 9 C 1.55057 * 111.05145 * 267.80972 * 7 6 4
10 10 O 1.44600 * 103.67054 * 205.24184 * 9 7 6
11 11 C 1.42837 * 106.73691 * 39.08351 * 10 9 7
12 12 C 1.52649 * 115.96155 * 202.49484 * 11 10 9
13 13 N 1.47224 * 87.77869 * 218.40414 * 12 11 10
14 14 C 1.36939 * 135.96717 * 206.41053 * 13 12 11
15 15 H 1.07997 * 120.00217 * 350.30795 * 14 13 12
16 16 C 1.38815 * 120.00045 * 170.30831 * 14 13 12
17 17 N 1.31615 * 119.99871 * 155.77166 * 16 14 13
18 18 Si 1.86799 * 119.99809 * 335.77620 * 16 14 13
19 19 H 1.48499 * 109.47191 * 89.99995 * 18 16 14
20 20 H 1.48506 * 109.46946 * 209.99664 * 18 16 14
21 21 H 1.48493 * 109.47277 * 329.99833 * 18 16 14
22 22 C 1.47218 * 88.06588 * 26.67112 * 13 12 11
23 23 C 1.53325 * 108.32784 * 334.31785 * 11 10 9
24 24 N 1.46901 * 109.47371 * 240.00178 * 2 1 3
25 25 C 1.47014 * 111.00117 * 75.73858 * 24 2 1
26 26 C 1.53095 * 109.26008 * 177.60748 * 25 24 2
27 27 O 1.43021 * 109.25626 * 56.85427 * 26 25 24
28 28 C 1.43016 * 113.73272 * 301.32808 * 27 26 25
29 29 C 1.47011 * 110.99758 * 312.10855 * 24 2 1
30 30 H 1.09008 * 109.47204 * 299.99827 * 1 2 3
31 31 H 1.08997 * 109.47560 * 59.99663 * 1 2 3
32 32 H 1.08997 * 109.47226 * 180.02562 * 1 2 3
33 33 H 0.96995 * 120.00093 * 359.97438 * 6 4 2
34 34 H 1.08994 * 110.58497 * 323.79295 * 9 7 6
35 35 H 1.08999 * 110.57908 * 86.69757 * 9 7 6
36 36 H 1.08999 * 113.50662 * 103.68018 * 12 11 10
37 37 H 1.09008 * 113.49847 * 333.12756 * 12 11 10
38 38 H 0.97002 * 120.00217 * 5.09132 * 17 16 14
39 39 H 1.09000 * 113.50950 * 88.06126 * 22 13 12
40 40 H 1.09001 * 113.49727 * 218.60487 * 22 13 12
41 41 H 1.08999 * 110.56185 * 120.18160 * 23 11 10
42 42 H 1.08999 * 110.56107 * 242.87943 * 23 11 10
43 43 H 1.09002 * 109.50988 * 297.55180 * 25 24 2
44 44 H 1.08999 * 109.50313 * 57.67812 * 25 24 2
45 45 H 1.08993 * 109.50741 * 296.91969 * 26 25 24
46 46 H 1.08996 * 109.50931 * 176.78057 * 26 25 24
47 47 H 1.08995 * 109.50979 * 298.73304 * 28 27 26
48 48 H 1.09009 * 109.50411 * 178.60609 * 28 27 26
49 49 H 1.09003 * 109.50761 * 302.32807 * 29 24 2
50 50 H 1.09006 * 109.51100 * 62.41224 * 29 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.4665 -1.8395 1.1440
6 7 1.9993 -0.0909 2.4269
7 6 2.4872 -0.7817 3.6232
8 1 3.2956 -1.4679 3.3705
9 6 1.3349 -1.5272 4.3448
10 8 1.7869 -1.6093 5.7159
11 6 2.4271 -0.3675 6.0131
12 6 3.4281 -0.3907 7.1654
13 7 2.9271 0.9387 7.5517
14 6 3.4306 2.0263 8.2140
15 1 4.3796 1.9558 8.7248
16 6 2.7214 3.2195 8.2289
17 7 2.9133 4.0870 9.2000
18 14 1.4947 3.5939 6.8708
19 1 0.1559 3.0812 7.2579
20 1 1.4209 5.0622 6.6614
21 1 1.9321 2.9359 5.6135
22 6 1.6454 0.5842 6.9200
23 6 2.9426 0.2353 4.7010
24 7 2.0197 -0.6924 -1.1994
25 6 1.8765 0.1548 -2.3923
26 6 2.4521 -0.5801 -3.6057
27 8 1.7891 -1.8387 -3.7530
28 6 1.9087 -2.6896 -2.6097
29 6 1.3276 -1.9760 -1.3862
30 1 -0.3634 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 1.6523 0.8122 2.4960
34 1 0.4090 -0.9558 4.2801
35 1 1.2014 -2.5241 3.9250
36 1 4.4678 -0.3850 6.8382
37 1 3.2218 -1.1646 7.9048
38 1 3.6020 3.9272 9.8641
39 1 0.9553 0.0749 7.5927
40 1 1.1805 1.4127 6.3856
41 1 2.4890 1.2103 4.5233
42 1 4.0294 0.3173 4.7183
43 1 0.8213 0.3682 -2.5628
44 1 2.4178 1.0890 -2.2422
45 1 3.5192 -0.7459 -3.4583
46 1 2.2967 0.0201 -4.5022
47 1 2.9600 -2.9167 -2.4334
48 1 1.3603 -3.6151 -2.7858
49 1 1.4681 -2.5973 -0.5016
50 1 0.2634 -1.7968 -1.5398
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054025578.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:23
Heat of formation + Delta-G solvation = -64.184664 kcal
Electronic energy + Delta-G solvation = -30833.322085 eV
Core-core repulsion = 26669.462138 eV
Total energy + Delta-G solvation = -4163.859947 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 1.67 seconds
Orbital eigenvalues (eV)
-41.91602 -41.25499 -39.93185 -38.21736 -36.99480 -35.72970 -34.52485 -32.57894
-32.12221 -31.11226 -30.00769 -27.69249 -27.34334 -27.13471 -25.26805 -25.01707
-23.44648 -22.64838 -21.65209 -20.84616 -20.70726 -19.49081 -18.41485 -17.99839
-17.37515 -17.28666 -16.91321 -16.78289 -16.57240 -16.18129 -16.10895 -15.89204
-15.74995 -15.54240 -15.29292 -14.98580 -14.81555 -14.59154 -14.27297 -14.13537
-13.60695 -13.42080 -13.30403 -13.17459 -13.03233 -12.83555 -12.76617 -12.65063
-12.43517 -12.37233 -12.31721 -12.03696 -11.95091 -11.54006 -11.51507 -11.34432
-10.96720 -10.75871 -10.47992 -10.45968 -10.09779 -9.33549 -9.30293 -8.69803
-5.47788 1.37589 1.50211 1.57535 1.69330 1.89660 2.54418 2.65333
2.80333 2.93128 3.00355 3.25769 3.38107 3.45977 3.54856 3.68542
3.85891 3.96590 4.02148 4.04957 4.09283 4.14420 4.19207 4.31140
4.33877 4.45055 4.58522 4.62470 4.63501 4.64936 4.65415 4.70347
4.73177 4.76652 4.77691 4.83108 4.84432 4.88971 4.90535 4.95705
5.01825 5.15690 5.16625 5.40426 5.83390 5.92439 5.94006 5.94916
6.18779 6.51707 6.65206 7.22224 7.30909 8.25317 8.82737
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020545 B = 0.002528 C = 0.002369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1362.533337 B =11072.397811 C =11816.967420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.067 3.933
3 H 0.129 0.871
4 C 0.524 3.476
5 O -0.559 6.559
6 N -0.708 5.708
7 C 0.127 3.873
8 H 0.098 0.902
9 C 0.037 3.963
10 O -0.367 6.367
11 C 0.083 3.917
12 C 0.124 3.876
13 N -0.641 5.641
14 C -0.303 4.303
15 H 0.045 0.955
16 C -0.078 4.078
17 N -0.954 5.954
18 Si 1.102 2.898
19 H -0.281 1.281
20 H -0.299 1.299
21 H -0.242 1.242
22 C 0.088 3.912
23 C -0.120 4.120
24 N -0.533 5.533
25 C 0.018 3.982
26 C 0.059 3.941
27 O -0.404 6.404
28 C 0.065 3.935
29 C 0.015 3.985
30 H 0.084 0.916
31 H 0.081 0.919
32 H 0.057 0.943
33 H 0.416 0.584
34 H 0.077 0.923
35 H 0.103 0.897
36 H 0.061 0.939
37 H 0.049 0.951
38 H 0.248 0.752
39 H 0.047 0.953
40 H 0.054 0.946
41 H 0.093 0.907
42 H 0.090 0.910
43 H 0.053 0.947
44 H 0.104 0.896
45 H 0.054 0.946
46 H 0.119 0.881
47 H 0.049 0.951
48 H 0.109 0.891
49 H 0.089 0.911
50 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.474 -9.259 -28.144 30.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.045 4.045
3 H 0.147 0.853
4 C 0.311 3.689
5 O -0.437 6.437
6 N -0.362 5.362
7 C 0.021 3.979
8 H 0.116 0.884
9 C -0.040 4.040
10 O -0.284 6.284
11 C 0.042 3.958
12 C -0.002 4.002
13 N -0.372 5.372
14 C -0.430 4.430
15 H 0.063 0.937
16 C -0.271 4.271
17 N -0.597 5.597
18 Si 0.927 3.073
19 H -0.208 1.208
20 H -0.227 1.227
21 H -0.167 1.167
22 C -0.037 4.037
23 C -0.158 4.158
24 N -0.258 5.258
25 C -0.109 4.109
26 C -0.017 4.017
27 O -0.323 6.323
28 C -0.012 4.012
29 C -0.113 4.113
30 H 0.103 0.897
31 H 0.100 0.900
32 H 0.076 0.924
33 H 0.253 0.747
34 H 0.096 0.904
35 H 0.121 0.879
36 H 0.079 0.921
37 H 0.067 0.933
38 H 0.057 0.943
39 H 0.065 0.935
40 H 0.072 0.928
41 H 0.111 0.889
42 H 0.108 0.892
43 H 0.071 0.929
44 H 0.122 0.878
45 H 0.072 0.928
46 H 0.137 0.863
47 H 0.068 0.932
48 H 0.127 0.873
49 H 0.107 0.893
50 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -6.763 -9.135 -28.547 30.727
hybrid contribution 0.783 -0.266 1.804 1.985
sum -5.981 -9.401 -26.743 28.971
Atomic orbital electron populations
1.22349 0.93237 1.03224 1.04739 1.21685 0.95641 0.99143 0.87988
0.85340 1.20920 0.77058 0.86311 0.84617 1.90644 1.46750 1.20200
1.86080 1.45825 1.64709 1.19528 1.06153 1.22341 0.96964 0.94041
0.84540 0.88412 1.24087 0.96879 1.02322 0.80726 1.88795 1.75680
1.34357 1.29530 1.23146 0.93727 0.84385 0.94571 1.22589 0.97206
0.87135 0.93256 1.45593 1.10864 1.12234 1.68476 1.19747 1.06308
0.89266 1.27690 0.93679 1.27178 1.04880 0.92595 1.02456 1.71053
1.32657 1.42831 1.13193 0.83379 0.73863 0.74998 0.75104 1.20803
1.22716 1.16718 1.23249 0.90433 0.95930 0.94083 1.22663 1.03081
0.99232 0.90815 1.62034 1.57102 1.04325 1.02373 1.22904 1.01149
0.97236 0.89658 1.22826 0.96207 0.84361 0.98349 1.87952 1.76173
1.28811 1.39354 1.22695 1.00800 0.93428 0.84255 1.22919 0.96414
0.91840 1.00084 0.89706 0.90042 0.92361 0.74697 0.90446 0.87894
0.92112 0.93289 0.94266 0.93534 0.92815 0.88866 0.89179 0.92916
0.87800 0.92787 0.86347 0.93218 0.87313 0.89291 0.93274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.76 8.29 71.98 0.60 -1.16 16
2 C 0.07 0.89 2.70 44.17 0.12 1.01 16
3 H 0.13 1.15 7.93 -2.38 -0.02 1.13 16
4 C 0.52 10.08 7.00 87.66 0.61 10.69 16
5 O -0.56 -15.06 13.88 -3.01 -0.04 -15.10 16
6 N -0.71 -12.19 5.20 -435.93 -2.27 -14.46 16
7 C 0.13 2.87 3.51 46.39 0.16 3.03 16
8 H 0.10 2.47 7.54 -2.39 -0.02 2.46 16
9 C 0.04 0.88 7.43 72.69 0.54 1.42 16
10 O -0.37 -11.33 11.32 -148.98 -1.69 -13.02 16
11 C 0.08 2.77 1.66 -10.82 -0.02 2.76 16
12 C 0.12 4.88 8.20 83.40 0.68 5.56 16
13 N -0.64 -30.83 3.52 -739.12 -2.60 -33.43 16
14 C -0.30 -17.41 10.94 84.03 0.92 -16.49 16
15 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16
16 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16
17 N -0.95 -60.46 13.70 21.65 0.30 -60.17 16
18 Si 1.10 49.89 25.29 68.60 1.73 51.63 16
19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16
21 H -0.24 -9.09 5.61 99.48 0.56 -8.53 16
22 C 0.09 3.55 6.76 83.50 0.56 4.12 16
23 C -0.12 -3.26 6.20 31.40 0.19 -3.07 16
24 N -0.53 -8.50 4.44 -874.38 -3.88 -12.38 16
25 C 0.02 0.20 5.44 86.31 0.47 0.67 16
26 C 0.06 0.75 7.01 72.01 0.50 1.25 16
27 O -0.40 -7.15 10.83 -148.98 -1.61 -8.77 16
28 C 0.07 1.08 7.01 72.02 0.50 1.59 16
29 C 0.02 0.26 4.51 86.31 0.39 0.65 16
30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16
31 H 0.08 0.65 6.99 -2.39 -0.02 0.63 16
32 H 0.06 0.73 6.37 -2.39 -0.02 0.72 16
33 H 0.42 5.09 8.41 -92.71 -0.78 4.31 16
34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16
36 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16
37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16
38 H 0.25 15.87 8.73 -92.71 -0.81 15.06 16
39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
40 H 0.05 2.08 3.66 -2.39 -0.01 2.07 16
41 H 0.09 2.47 6.38 -2.39 -0.02 2.46 16
42 H 0.09 2.51 7.81 -2.39 -0.02 2.49 16
43 H 0.05 0.54 6.98 -2.39 -0.02 0.52 16
44 H 0.10 0.82 8.04 -2.39 -0.02 0.81 16
45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
46 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16
47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
48 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16
49 H 0.09 1.90 5.87 -2.39 -0.01 1.88 16
50 H 0.05 0.77 6.36 -2.38 -0.02 0.75 16
Total: -1.00 -74.80 380.48 -3.36 -78.16
By element:
Atomic # 1 Polarization: 19.59 SS G_CDS: -0.01 Total: 19.58 kcal
Atomic # 6 Polarization: 1.25 SS G_CDS: 6.71 Total: 7.96 kcal
Atomic # 7 Polarization: -111.98 SS G_CDS: -8.45 Total: -120.43 kcal
Atomic # 8 Polarization: -33.55 SS G_CDS: -3.34 Total: -36.89 kcal
Atomic # 14 Polarization: 49.89 SS G_CDS: 1.73 Total: 51.63 kcal
Total: -74.80 -3.36 -78.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054025578.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.973 kcal
(2) G-P(sol) polarization free energy of solvation -74.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.67 seconds