Wall clock time and date at job start Tue Mar 31 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99877 * 2 1 4 4 H 1.08999 * 109.47118 * 30.00478 * 3 2 1 5 5 C 1.52995 * 109.47512 * 270.00101 * 3 2 1 6 6 C 1.50708 * 109.46895 * 149.99905 * 3 2 1 7 7 O 1.21283 * 119.99828 * 9.60013 * 6 3 2 8 8 N 1.34769 * 120.00110 * 189.59774 * 6 3 2 9 9 C 1.46927 * 120.62881 * 4.62042 * 8 6 3 10 10 C 1.53192 * 108.77634 * 233.60774 * 9 8 6 11 11 C 1.53037 * 109.31685 * 305.37126 * 10 9 8 12 12 C 1.53033 * 109.53803 * 61.36237 * 11 10 9 13 13 H 1.08992 * 109.50398 * 58.62190 * 12 11 10 14 14 N 1.46505 * 109.49854 * 178.68917 * 12 11 10 15 15 C 1.45651 * 117.70168 * 239.98121 * 14 12 11 16 16 C 1.52991 * 110.76934 * 158.11922 * 15 14 12 17 17 N 1.47517 * 108.23612 * 46.75857 * 16 15 14 18 18 C 1.36939 * 121.51517 * 118.47877 * 17 16 15 19 19 H 1.08001 * 119.99752 * 338.77836 * 18 17 16 20 20 C 1.38809 * 120.00119 * 158.78265 * 18 17 16 21 21 N 1.31615 * 119.99926 * 343.88206 * 20 18 17 22 22 Si 1.86794 * 119.99978 * 163.88019 * 20 18 17 23 23 H 1.48505 * 109.47282 * 60.00094 * 22 20 18 24 24 H 1.48499 * 109.47327 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47357 * 299.99887 * 22 20 18 26 26 C 1.47052 * 117.13004 * 298.52603 * 17 16 15 27 27 C 1.33384 * 117.70776 * 59.99507 * 14 12 11 28 28 O 1.21278 * 118.48408 * 4.28159 * 27 14 12 29 29 C 1.46924 * 120.63308 * 184.62825 * 8 6 3 30 30 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47109 * 299.99513 * 1 2 3 32 32 H 1.09002 * 109.47588 * 59.99650 * 1 2 3 33 33 H 1.09006 * 109.46964 * 53.63381 * 5 3 2 34 34 H 1.08993 * 109.47179 * 173.63789 * 5 3 2 35 35 H 1.09000 * 109.47104 * 293.64015 * 5 3 2 36 36 H 1.09000 * 109.58198 * 113.82499 * 9 8 6 37 37 H 1.08995 * 109.58953 * 353.40156 * 9 8 6 38 38 H 1.09000 * 109.49892 * 185.41438 * 10 9 8 39 39 H 1.09002 * 109.49832 * 65.32159 * 10 9 8 40 40 H 1.09007 * 109.45697 * 301.34278 * 11 10 9 41 41 H 1.08997 * 109.46226 * 181.38588 * 11 10 9 42 42 H 1.08997 * 109.21313 * 278.44944 * 15 14 12 43 43 H 1.09000 * 109.21769 * 37.78744 * 15 14 12 44 44 H 1.09004 * 109.71677 * 166.39658 * 16 15 14 45 45 H 1.09002 * 109.72159 * 287.00268 * 16 15 14 46 46 H 0.97003 * 120.00403 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.56531 * 282.83448 * 26 17 16 48 48 H 1.09001 * 109.56419 * 162.60188 * 26 17 16 49 49 H 1.08997 * 109.58437 * 6.59924 * 29 8 6 50 50 H 1.09003 * 109.58262 * 246.17999 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 3.3386 1.2639 0.7105 7 8 3.8291 0.1979 1.0172 8 7 3.9816 2.4111 1.0049 9 6 3.3552 3.7117 0.7312 10 6 4.3169 4.5543 -0.1127 11 6 5.6685 4.6449 0.5992 12 6 6.2617 3.2425 0.7518 13 1 6.3773 2.7873 -0.2318 14 7 7.5698 3.3333 1.4053 15 6 8.7272 2.8333 0.6759 16 6 10.0166 3.4618 1.2079 17 7 9.9911 3.3911 2.6811 18 6 10.9371 2.6905 3.3807 19 1 11.5039 1.9121 2.8916 20 6 11.1673 2.9806 4.7184 21 7 10.7271 4.1095 5.2322 22 14 12.1020 1.7688 5.7895 23 1 13.4610 1.5585 5.2289 24 1 12.2129 2.3096 7.1680 25 1 11.3747 0.4745 5.8231 26 6 8.9044 4.1052 3.3679 27 6 7.6173 3.8677 2.6264 28 8 6.5747 4.1767 3.1635 29 6 5.3222 2.3851 1.6055 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.2772 1.6939 -1.9881 34 1 2.5544 2.8080 -1.4445 35 1 2.9689 1.1443 -1.9224 36 1 3.1499 4.2234 1.6714 37 1 2.4247 3.5612 0.1839 38 1 3.9058 5.5555 -0.2419 39 1 4.4502 4.0866 -1.0882 40 1 5.5308 5.0902 1.5846 41 1 6.3470 5.2644 0.0128 42 1 8.7824 1.7506 0.7894 43 1 8.6184 3.0775 -0.3807 44 1 10.8777 2.9110 0.8290 45 1 10.0769 4.5026 0.8898 46 1 10.8877 4.3122 6.1672 47 1 9.1235 5.1728 3.3863 48 1 8.8116 3.7340 4.3886 49 1 5.6894 1.3593 1.6351 50 1 5.2772 2.7886 2.6171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:57 Heat of formation + Delta-G solvation = -68.468234 kcal Electronic energy + Delta-G solvation = -31583.873307 eV Core-core repulsion = 27419.827611 eV Total energy + Delta-G solvation = -4164.045697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80889 -39.75707 -37.98696 -36.91231 -36.00589 -34.65236 -32.79295 -31.94767 -31.46430 -29.62716 -28.81526 -27.14705 -26.41309 -25.91345 -23.85421 -23.59735 -23.02746 -21.95524 -20.74750 -19.09742 -18.17496 -17.74852 -17.12231 -16.64550 -16.31161 -15.91499 -15.68846 -15.36574 -15.24514 -14.80851 -14.62723 -14.46753 -14.17652 -13.89365 -13.66195 -13.47278 -13.35409 -13.26457 -12.96773 -12.72080 -12.59114 -12.51505 -12.34975 -12.09555 -11.76432 -11.53606 -11.44342 -11.43447 -11.11445 -10.99423 -10.85350 -10.65918 -10.62822 -10.44138 -10.23580 -10.21394 -9.98265 -9.58307 -9.03489 -8.70676 -8.64346 -8.09198 -6.97105 -5.91255 -3.31980 2.51375 2.59216 3.34192 3.37153 3.42127 3.42513 3.47912 3.70061 4.24109 4.39219 4.48028 4.65334 4.68046 4.78747 4.82156 4.94209 4.99229 5.03410 5.15753 5.18002 5.28118 5.29227 5.31918 5.33043 5.35307 5.45392 5.58303 5.64659 5.66168 5.70505 5.83211 5.87285 5.88846 6.03800 6.08930 6.26518 6.29717 6.40009 6.43736 6.58089 6.74174 6.88788 7.08069 7.24796 7.33907 7.65053 8.08940 8.13023 8.17613 8.80015 9.05643 9.64581 10.17337 11.18568 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002850 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.869517 B = 9822.830226 C =10440.782607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.084 0.916 5 C -0.173 4.173 6 C 0.513 3.487 7 O -0.519 6.519 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.137 4.137 12 C 0.133 3.867 13 H 0.079 0.921 14 N -0.597 5.597 15 C 0.100 3.900 16 C 0.129 3.871 17 N -0.595 5.595 18 C -0.256 4.256 19 H 0.075 0.925 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.910 3.090 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.164 3.836 27 C 0.505 3.495 28 O -0.569 6.569 29 C 0.095 3.905 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.121 0.879 49 H 0.087 0.913 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 1.036 -15.000 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.231 4.231 6 C 0.299 3.701 7 O -0.394 6.394 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.097 0.903 14 N -0.330 5.330 15 C -0.025 4.025 16 C 0.002 3.998 17 N -0.320 5.320 18 C -0.384 4.384 19 H 0.093 0.907 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.739 3.261 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.036 3.964 27 C 0.296 3.704 28 O -0.449 6.449 29 C -0.028 4.028 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.138 0.862 49 H 0.105 0.895 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.108 0.477 -14.332 23.099 hybrid contribution 0.311 -0.278 0.418 0.591 sum -17.798 0.199 -13.914 22.592 Atomic orbital electron populations 1.22886 0.80715 1.03269 0.99966 1.88065 1.19555 1.25213 1.94929 1.21937 0.93695 0.86671 0.96767 0.89846 1.22318 1.03574 1.02301 0.94872 1.20342 0.86521 0.83893 0.79296 1.90728 1.67266 1.29217 1.52192 1.48017 1.18129 1.05384 1.62418 1.21915 0.95950 0.83872 1.00496 1.21884 0.95945 1.00124 0.98795 1.21957 0.95595 0.97017 1.02964 1.21306 0.84108 0.95911 0.95849 0.90297 1.47411 1.06781 1.61579 1.17194 1.22068 0.86839 0.99009 0.94542 1.21282 0.94198 0.98103 0.86187 1.44241 1.28489 1.59780 0.99465 1.19150 1.14596 1.11504 0.93191 0.90736 1.24997 0.99646 0.96506 0.98496 1.69935 1.49860 1.21435 1.14029 0.86252 0.79519 0.80721 0.79604 1.20791 1.21483 1.20859 1.21070 0.80595 0.97449 0.97301 1.22141 0.93663 0.74486 0.80129 1.90492 1.34732 1.53171 1.66504 1.22249 0.80047 1.01597 0.98863 0.89121 0.93841 0.93862 0.91151 0.90439 0.91037 0.90611 0.89887 0.90340 0.91648 0.88887 0.91745 0.92325 0.92006 0.90561 0.94978 0.93100 0.92093 0.86172 0.89472 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.42 9.90 -54.96 -0.54 -4.96 16 3 C 0.07 0.74 2.28 -27.88 -0.06 0.68 16 4 H 0.08 0.66 6.86 -51.93 -0.36 0.30 16 5 C -0.17 -1.34 9.18 37.15 0.34 -1.00 16 6 C 0.51 7.49 7.04 -10.98 -0.08 7.42 16 7 O -0.52 -10.10 15.96 -14.17 -0.23 -10.32 16 8 N -0.60 -8.03 2.97 -172.77 -0.51 -8.55 16 9 C 0.10 0.95 5.61 -3.71 -0.02 0.93 16 10 C -0.13 -1.16 5.96 -26.61 -0.16 -1.32 16 11 C -0.14 -1.76 5.03 -26.70 -0.13 -1.89 16 12 C 0.13 1.97 2.61 -67.81 -0.18 1.80 16 13 H 0.08 1.06 7.73 -51.93 -0.40 0.66 16 14 N -0.60 -10.47 2.79 -167.16 -0.47 -10.94 16 15 C 0.10 1.61 6.45 -4.50 -0.03 1.58 16 16 C 0.13 2.40 6.61 -3.49 -0.02 2.38 16 17 N -0.60 -14.14 3.04 -173.50 -0.53 -14.67 16 18 C -0.26 -6.68 9.74 -15.06 -0.15 -6.83 16 19 H 0.07 1.88 7.88 -52.49 -0.41 1.46 16 20 C 0.00 0.05 5.02 -17.43 -0.09 -0.03 16 21 N -0.91 -25.59 10.92 55.49 0.61 -24.98 16 22 Si 0.91 21.36 29.58 -169.99 -5.03 16.33 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.16 3.92 5.17 -5.03 -0.03 3.89 16 27 C 0.51 10.60 6.98 -11.74 -0.08 10.52 16 28 O -0.57 -12.49 12.46 5.56 0.07 -12.42 16 29 C 0.09 1.55 5.64 -3.71 -0.02 1.53 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.04 0.24 7.76 -51.93 -0.40 -0.17 16 33 H 0.07 0.42 7.77 -51.93 -0.40 0.02 16 34 H 0.08 0.48 5.67 -51.93 -0.29 0.18 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.54 4.45 -51.93 -0.23 0.31 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.53 7.86 -51.93 -0.41 0.13 16 40 H 0.09 1.45 6.11 -51.92 -0.32 1.14 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 44 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.12 3.28 6.23 -51.93 -0.32 2.95 16 49 H 0.09 1.63 7.03 -51.93 -0.37 1.26 16 50 H 0.10 1.98 5.65 -51.93 -0.29 1.69 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -33.23 381.53 -8.47 -41.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.97 Total: 2.12 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 0.39 Total: 20.95 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.90 Total: -59.14 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.70 Total: -27.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.23 -8.47 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds