Wall clock time and date at job start Tue Mar 31 2020 22:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99877 * 2 1 4 4 H 1.08999 * 109.47118 * 30.00478 * 3 2 1 5 5 C 1.52995 * 109.47512 * 270.00101 * 3 2 1 6 6 C 1.50708 * 109.46895 * 149.99905 * 3 2 1 7 7 O 1.21283 * 119.99828 * 9.60013 * 6 3 2 8 8 N 1.34769 * 120.00110 * 189.59774 * 6 3 2 9 9 C 1.46927 * 120.62881 * 4.62042 * 8 6 3 10 10 C 1.53192 * 108.77634 * 233.60774 * 9 8 6 11 11 C 1.53037 * 109.31685 * 305.37126 * 10 9 8 12 12 C 1.53033 * 109.53803 * 61.36237 * 11 10 9 13 13 H 1.08992 * 109.50398 * 58.62190 * 12 11 10 14 14 N 1.46505 * 109.49854 * 178.68917 * 12 11 10 15 15 C 1.45651 * 117.70168 * 239.98121 * 14 12 11 16 16 C 1.52991 * 110.76934 * 158.11922 * 15 14 12 17 17 N 1.47517 * 108.23612 * 46.75857 * 16 15 14 18 18 C 1.36939 * 121.51517 * 118.47877 * 17 16 15 19 19 H 1.08001 * 119.99752 * 338.77836 * 18 17 16 20 20 C 1.38809 * 120.00119 * 158.78265 * 18 17 16 21 21 N 1.31615 * 119.99926 * 343.88206 * 20 18 17 22 22 Si 1.86794 * 119.99978 * 163.88019 * 20 18 17 23 23 H 1.48505 * 109.47282 * 60.00094 * 22 20 18 24 24 H 1.48499 * 109.47327 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47357 * 299.99887 * 22 20 18 26 26 C 1.47052 * 117.13004 * 298.52603 * 17 16 15 27 27 C 1.33384 * 117.70776 * 59.99507 * 14 12 11 28 28 O 1.21278 * 118.48408 * 4.28159 * 27 14 12 29 29 C 1.46924 * 120.63308 * 184.62825 * 8 6 3 30 30 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47109 * 299.99513 * 1 2 3 32 32 H 1.09002 * 109.47588 * 59.99650 * 1 2 3 33 33 H 1.09006 * 109.46964 * 53.63381 * 5 3 2 34 34 H 1.08993 * 109.47179 * 173.63789 * 5 3 2 35 35 H 1.09000 * 109.47104 * 293.64015 * 5 3 2 36 36 H 1.09000 * 109.58198 * 113.82499 * 9 8 6 37 37 H 1.08995 * 109.58953 * 353.40156 * 9 8 6 38 38 H 1.09000 * 109.49892 * 185.41438 * 10 9 8 39 39 H 1.09002 * 109.49832 * 65.32159 * 10 9 8 40 40 H 1.09007 * 109.45697 * 301.34278 * 11 10 9 41 41 H 1.08997 * 109.46226 * 181.38588 * 11 10 9 42 42 H 1.08997 * 109.21313 * 278.44944 * 15 14 12 43 43 H 1.09000 * 109.21769 * 37.78744 * 15 14 12 44 44 H 1.09004 * 109.71677 * 166.39658 * 16 15 14 45 45 H 1.09002 * 109.72159 * 287.00268 * 16 15 14 46 46 H 0.97003 * 120.00403 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.56531 * 282.83448 * 26 17 16 48 48 H 1.09001 * 109.56419 * 162.60188 * 26 17 16 49 49 H 1.08997 * 109.58437 * 6.59924 * 29 8 6 50 50 H 1.09003 * 109.58262 * 246.17999 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 3.3386 1.2639 0.7105 7 8 3.8291 0.1979 1.0172 8 7 3.9816 2.4111 1.0049 9 6 3.3552 3.7117 0.7312 10 6 4.3169 4.5543 -0.1127 11 6 5.6685 4.6449 0.5992 12 6 6.2617 3.2425 0.7518 13 1 6.3773 2.7873 -0.2318 14 7 7.5698 3.3333 1.4053 15 6 8.7272 2.8333 0.6759 16 6 10.0166 3.4618 1.2079 17 7 9.9911 3.3911 2.6811 18 6 10.9371 2.6905 3.3807 19 1 11.5039 1.9121 2.8916 20 6 11.1673 2.9806 4.7184 21 7 10.7271 4.1095 5.2322 22 14 12.1020 1.7688 5.7895 23 1 13.4610 1.5585 5.2289 24 1 12.2129 2.3096 7.1680 25 1 11.3747 0.4745 5.8231 26 6 8.9044 4.1052 3.3679 27 6 7.6173 3.8677 2.6264 28 8 6.5747 4.1767 3.1635 29 6 5.3222 2.3851 1.6055 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.2772 1.6939 -1.9881 34 1 2.5544 2.8080 -1.4445 35 1 2.9689 1.1443 -1.9224 36 1 3.1499 4.2234 1.6714 37 1 2.4247 3.5612 0.1839 38 1 3.9058 5.5555 -0.2419 39 1 4.4502 4.0866 -1.0882 40 1 5.5308 5.0902 1.5846 41 1 6.3470 5.2644 0.0128 42 1 8.7824 1.7506 0.7894 43 1 8.6184 3.0775 -0.3807 44 1 10.8777 2.9110 0.8290 45 1 10.0769 4.5026 0.8898 46 1 10.8877 4.3122 6.1672 47 1 9.1235 5.1728 3.3863 48 1 8.8116 3.7340 4.3886 49 1 5.6894 1.3593 1.6351 50 1 5.2772 2.7886 2.6171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:56 Heat of formation + Delta-G solvation = -91.164918 kcal Electronic energy + Delta-G solvation = -31584.857509 eV Core-core repulsion = 27419.827611 eV Total energy + Delta-G solvation = -4165.029899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05205 -41.05598 -38.91082 -38.07996 -37.70412 -36.17501 -34.10291 -33.07345 -32.71705 -30.94870 -30.43165 -28.19192 -27.74494 -26.89563 -25.33853 -24.81826 -24.11680 -23.35491 -21.93390 -20.10623 -19.87682 -18.83132 -18.46235 -17.92469 -17.78070 -17.03597 -16.92132 -16.65404 -16.42429 -16.27618 -15.79088 -15.58938 -15.37996 -15.26459 -15.05667 -14.84576 -14.66466 -14.39346 -14.09432 -13.91457 -13.75740 -13.46660 -13.29565 -13.25430 -13.10877 -12.84958 -12.74096 -12.68868 -12.48643 -12.35224 -12.17729 -12.13258 -11.92042 -11.82362 -11.78650 -11.74276 -11.02117 -10.71540 -10.63785 -10.50483 -9.98345 -9.44471 -8.90882 -7.94876 -5.37122 1.43386 1.45582 1.49772 1.53600 1.55533 1.71310 2.16351 2.46456 2.89242 3.22873 3.37732 3.45710 3.63682 3.76789 3.84875 3.92855 3.99836 4.01202 4.08416 4.16270 4.21265 4.40647 4.45338 4.46956 4.53558 4.54654 4.61643 4.64788 4.70528 4.77611 4.81635 4.85544 4.90304 4.91333 4.93464 5.04051 5.09986 5.18290 5.21389 5.28309 5.29621 5.41726 5.57858 5.70043 6.04475 6.20918 6.34876 6.51375 6.95480 7.04703 7.23766 7.69717 8.20274 9.13336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002850 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.869517 B = 9822.830226 C =10440.782607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.400 6.400 3 C 0.075 3.925 4 H 0.115 0.885 5 C -0.167 4.167 6 C 0.504 3.496 7 O -0.582 6.582 8 N -0.599 5.599 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.135 3.865 13 H 0.105 0.895 14 N -0.592 5.592 15 C 0.103 3.897 16 C 0.125 3.875 17 N -0.613 5.613 18 C -0.259 4.259 19 H 0.084 0.916 20 C -0.054 4.054 21 N -0.940 5.940 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.296 1.296 25 H -0.284 1.284 26 C 0.173 3.827 27 C 0.507 3.493 28 O -0.584 6.584 29 C 0.102 3.898 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.252 0.748 47 H 0.039 0.961 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.977 1.580 -18.681 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.014 3.986 4 H 0.133 0.867 5 C -0.224 4.224 6 C 0.293 3.707 7 O -0.461 6.461 8 N -0.333 5.333 9 C -0.028 4.028 10 C -0.158 4.158 11 C -0.171 4.171 12 C 0.031 3.969 13 H 0.123 0.877 14 N -0.323 5.323 15 C -0.021 4.021 16 C 0.000 4.000 17 N -0.339 5.339 18 C -0.388 4.388 19 H 0.102 0.898 20 C -0.249 4.249 21 N -0.587 5.587 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.223 1.223 25 H -0.210 1.210 26 C 0.045 3.955 27 C 0.297 3.703 28 O -0.466 6.466 29 C -0.022 4.022 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.052 1.043 -18.091 27.027 hybrid contribution 0.864 -0.469 1.528 1.817 sum -19.189 0.574 -16.564 25.355 Atomic orbital electron populations 1.23113 0.78457 1.04200 1.01653 1.88020 1.22113 1.26545 1.95220 1.22075 0.91365 0.86947 0.98241 0.86703 1.22328 1.04472 1.02951 0.92632 1.21336 0.87813 0.83048 0.78526 1.90693 1.69075 1.31520 1.54832 1.48097 1.16853 1.06951 1.61367 1.22277 0.97539 0.81813 1.01172 1.21895 0.93177 1.01943 0.98746 1.21904 0.98200 0.95006 1.02006 1.21515 0.82114 0.97388 0.95838 0.87710 1.47372 1.08781 1.60021 1.16137 1.22113 0.84916 0.98428 0.96629 1.21529 0.96327 0.99182 0.82935 1.44464 1.28009 1.59638 1.01746 1.19549 1.14158 1.11494 0.93639 0.89792 1.25753 1.01330 0.97955 0.99895 1.70104 1.51738 1.23163 1.13675 0.85301 0.78891 0.78422 0.77638 1.19364 1.22258 1.21048 1.20636 0.82690 0.96026 0.96178 1.21400 0.92050 0.75524 0.81375 1.90495 1.34698 1.54114 1.67279 1.21839 0.82597 0.99650 0.98087 0.88802 0.92945 0.91236 0.88641 0.88152 0.92932 0.91165 0.85868 0.87262 0.89492 0.92108 0.90738 0.92649 0.87056 0.89054 0.94036 0.93896 0.94348 0.90288 0.92704 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.40 -9.21 9.90 -130.12 -1.29 -10.50 16 3 C 0.07 1.36 2.28 29.85 0.07 1.43 16 4 H 0.12 1.32 6.86 -2.39 -0.02 1.31 16 5 C -0.17 -1.88 9.18 71.98 0.66 -1.22 16 6 C 0.50 14.38 7.04 87.66 0.62 15.00 16 7 O -0.58 -23.47 15.96 15.82 0.25 -23.22 16 8 N -0.60 -15.24 2.97 -818.91 -2.43 -17.67 16 9 C 0.09 1.44 5.61 86.36 0.48 1.93 16 10 C -0.12 -1.61 5.96 30.67 0.18 -1.42 16 11 C -0.13 -3.09 5.03 30.62 0.15 -2.93 16 12 C 0.14 3.80 2.61 45.07 0.12 3.92 16 13 H 0.10 2.46 7.73 -2.39 -0.02 2.44 16 14 N -0.59 -20.42 2.79 -801.95 -2.24 -22.65 16 15 C 0.10 3.07 6.45 86.54 0.56 3.63 16 16 C 0.13 4.49 6.61 86.18 0.57 5.06 16 17 N -0.61 -29.70 3.04 -702.82 -2.14 -31.84 16 18 C -0.26 -13.76 9.74 84.03 0.82 -12.94 16 19 H 0.08 4.21 7.88 -2.91 -0.02 4.18 16 20 C -0.05 -3.02 5.02 84.86 0.43 -2.59 16 21 N -0.94 -55.56 10.92 21.65 0.24 -55.33 16 22 Si 0.97 45.05 29.58 68.60 2.03 47.08 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 C 0.17 8.75 5.17 85.44 0.44 9.19 16 27 C 0.51 22.04 6.98 87.79 0.61 22.65 16 28 O -0.58 -26.93 12.46 -3.02 -0.04 -26.97 16 29 C 0.10 3.41 5.64 86.36 0.49 3.90 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.55 8.09 -2.38 -0.02 0.53 16 32 H 0.07 0.49 7.76 -2.39 -0.02 0.47 16 33 H 0.09 0.64 7.77 -2.38 -0.02 0.62 16 34 H 0.10 0.64 5.67 -2.39 -0.01 0.63 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 0.94 4.45 -2.39 -0.01 0.93 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.89 7.86 -2.39 -0.02 0.87 16 40 H 0.06 1.85 6.11 -2.38 -0.01 1.84 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.11 2.32 7.94 -2.39 -0.02 2.30 16 44 H 0.09 2.98 7.97 -2.39 -0.02 2.96 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 4.63 6.23 -2.39 -0.01 4.62 16 49 H 0.05 2.16 7.03 -2.39 -0.02 2.14 16 50 H 0.07 2.82 5.65 -2.39 -0.01 2.81 16 Total: -1.00 -80.35 381.53 2.75 -77.60 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.94 Total: 16.40 kcal Atomic # 6 Polarization: 39.67 SS G_CDS: 7.43 Total: 47.09 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.57 Total: -127.49 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -1.07 Total: -60.69 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -80.35 2.75 -77.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.567 kcal (2) G-P(sol) polarization free energy of solvation -80.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds