Wall clock time and date at job start Tue Mar 31 2020 22:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00064 * 2 1 4 4 H 1.09005 * 110.91397 * 26.10025 * 3 2 1 5 5 C 1.54910 * 111.00506 * 262.20031 * 3 2 1 6 6 N 1.47426 * 104.83438 * 204.91610 * 5 3 2 7 7 C 1.36928 * 125.65101 * 204.09573 * 6 5 3 8 8 H 1.08002 * 120.00165 * 180.02562 * 7 6 5 9 9 C 1.38815 * 120.00260 * 0.03524 * 7 6 5 10 10 N 1.31622 * 119.99693 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00352 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47410 * 90.00133 * 11 9 7 13 13 H 1.48507 * 109.46882 * 210.00084 * 11 9 7 14 14 H 1.48498 * 109.47145 * 329.99925 * 11 9 7 15 15 C 1.47027 * 108.70068 * 24.12653 * 6 5 3 16 16 C 1.54329 * 107.27332 * 358.94253 * 15 6 5 17 17 H 1.08997 * 110.71635 * 96.34319 * 16 15 6 18 18 N 1.46496 * 110.72041 * 219.44740 * 16 15 6 19 19 C 1.34774 * 119.99544 * 273.54376 * 18 16 15 20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.46953 * 299.99667 * 21 19 18 23 23 C 1.52997 * 109.47103 * 59.99861 * 21 19 18 24 24 N 1.46496 * 109.47106 * 179.97438 * 21 19 18 25 25 C 1.45757 * 117.94790 * 119.99776 * 24 21 19 26 26 C 1.52914 * 110.48916 * 160.92222 * 25 24 21 27 27 C 1.53347 * 108.67593 * 50.75625 * 26 25 24 28 28 C 1.53069 * 108.42223 * 292.46856 * 27 26 25 29 29 C 1.33351 * 117.95124 * 299.73474 * 24 21 19 30 30 O 1.21284 * 118.24113 * 2.22398 * 29 24 21 31 31 H 1.08998 * 109.47315 * 60.00000 * 1 2 3 32 32 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46688 * 299.99673 * 1 2 3 34 34 H 1.08999 * 110.37000 * 86.07613 * 5 3 2 35 35 H 1.09004 * 110.36616 * 323.75505 * 5 3 2 36 36 H 0.96994 * 120.00236 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.88353 * 239.52522 * 15 6 5 38 38 H 1.08994 * 110.01108 * 118.43230 * 15 6 5 39 39 H 0.96994 * 120.00700 * 93.54496 * 18 16 15 40 40 H 1.09000 * 109.47140 * 300.00046 * 23 21 19 41 41 H 1.08992 * 109.47280 * 59.99899 * 23 21 19 42 42 H 1.09002 * 109.46777 * 180.02562 * 23 21 19 43 43 H 1.09000 * 109.30381 * 281.23900 * 25 24 21 44 44 H 1.09009 * 109.29867 * 40.60904 * 25 24 21 45 45 H 1.08999 * 109.60349 * 170.51230 * 26 25 24 46 46 H 1.08998 * 109.60476 * 290.83272 * 26 25 24 47 47 H 1.08999 * 109.67284 * 52.19616 * 27 26 25 48 48 H 1.08995 * 109.67550 * 172.73227 * 27 26 25 49 49 H 1.08994 * 109.39952 * 169.02598 * 28 27 26 50 50 H 1.08998 * 109.40117 * 288.85475 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0329 0.4480 5 6 2.4154 1.7329 -1.4328 6 7 3.4909 2.7230 -1.2414 7 6 3.8429 3.7012 -2.1325 8 1 4.6492 4.3804 -1.8981 9 6 3.1634 3.8201 -3.3371 10 7 2.1803 2.9927 -3.6225 11 14 3.6441 5.1541 -4.5530 12 1 4.6832 4.6315 -5.4761 13 1 2.4499 5.5656 -5.3340 14 1 4.1811 6.3258 -3.8156 15 6 4.1233 2.4855 0.0645 16 6 3.3825 1.3033 0.7242 17 1 3.9136 0.3681 0.5469 18 7 3.2109 1.5357 2.1604 19 6 4.1857 1.1822 3.0213 20 8 5.2050 0.6721 2.6071 21 6 4.0090 1.4206 4.4989 22 1 3.8707 2.4864 4.6809 23 6 2.7813 0.6548 4.9959 24 7 5.1985 0.9528 5.2147 25 6 5.9501 1.9247 5.9990 26 6 6.8363 1.2153 7.0235 27 6 7.6504 0.1337 6.3032 28 6 6.6891 -0.9576 5.8256 29 6 5.5228 -0.3366 5.1123 30 8 4.8421 -1.0448 4.4009 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.5685 2.1874 -1.9469 35 1 2.7851 0.8749 -1.9943 36 1 1.7051 3.0760 -4.4640 37 1 4.0316 3.3749 0.6880 38 1 5.1753 2.2347 -0.0707 39 1 2.3958 1.9439 2.4917 40 1 1.8961 1.0025 4.4633 41 1 2.9195 -0.4108 4.8139 42 1 2.6533 0.8277 6.0645 43 1 6.5748 2.5196 5.3327 44 1 5.2544 2.5834 6.5190 45 1 7.5122 1.9361 7.4837 46 1 6.2129 0.7569 7.7911 47 1 8.1643 0.5704 5.4470 48 1 8.3800 -0.2949 6.9903 49 1 7.2140 -1.6313 5.1485 50 1 6.3240 -1.5199 6.6850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082383448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:48 Heat of formation + Delta-G solvation = -75.933837 kcal Electronic energy + Delta-G solvation = -31358.313227 eV Core-core repulsion = 27193.943798 eV Total energy + Delta-G solvation = -4164.369429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03922 -39.23355 -37.88640 -36.52920 -35.86074 -34.73510 -33.96798 -31.87440 -30.69122 -29.66122 -28.69077 -27.04705 -26.03450 -25.04697 -24.59070 -23.94586 -22.49259 -20.71339 -20.50461 -19.73868 -18.72529 -17.44781 -17.10581 -16.74393 -16.43023 -15.90561 -15.48003 -15.31318 -14.83379 -14.64908 -14.52172 -14.41310 -14.26554 -14.00352 -13.81313 -13.67472 -13.36725 -13.19174 -12.80138 -12.45802 -12.36501 -12.15700 -12.12389 -11.79920 -11.69763 -11.44353 -11.34717 -11.28016 -11.23761 -11.17598 -10.98412 -10.82231 -10.70796 -10.17388 -9.87364 -9.79440 -9.66549 -9.49224 -9.01298 -8.74856 -8.68255 -8.51955 -6.87560 -5.67615 -3.10612 2.60467 2.84186 2.96273 3.39578 3.44153 3.45955 3.50559 4.18322 4.35945 4.41343 4.43443 4.50877 4.56663 4.78980 4.89107 4.94246 5.09930 5.12748 5.20609 5.27429 5.40488 5.43662 5.45161 5.52447 5.53414 5.58475 5.60540 5.66087 5.67246 5.73582 5.74771 5.88221 5.89682 5.98747 6.07020 6.14962 6.28138 6.31693 6.57506 6.73431 6.98058 7.30648 7.40835 7.57615 7.74559 7.80358 7.85737 8.24201 8.29154 8.58155 9.17955 9.78347 10.41612 11.36099 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.002921 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.656156 B = 9583.027685 C =10692.937050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.056 3.944 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.139 3.861 17 H 0.099 0.901 18 N -0.716 5.716 19 C 0.511 3.489 20 O -0.519 6.519 21 C 0.125 3.875 22 H 0.109 0.891 23 C -0.164 4.164 24 N -0.592 5.592 25 C 0.113 3.887 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.131 4.131 29 C 0.523 3.477 30 O -0.530 6.530 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.112 0.888 35 H 0.026 0.974 36 H 0.253 0.747 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.394 0.606 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -2.648 24.463 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.097 0.903 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.005 3.995 16 C 0.034 3.966 17 H 0.117 0.883 18 N -0.368 5.368 19 C 0.295 3.705 20 O -0.393 6.393 21 C 0.018 3.982 22 H 0.127 0.873 23 C -0.223 4.223 24 N -0.326 5.326 25 C -0.010 4.010 26 C -0.171 4.171 27 C -0.162 4.162 28 C -0.170 4.170 29 C 0.312 3.688 30 O -0.406 6.406 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.130 0.870 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.228 0.772 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.659 -3.515 23.593 24.001 hybrid contribution -0.285 1.204 -0.487 1.330 sum 2.374 -2.310 23.105 23.341 Atomic orbital electron populations 1.22699 0.81738 1.01918 0.99792 1.87877 1.19087 1.27695 1.95051 1.24020 0.92632 0.83715 1.00007 0.91585 1.22291 0.94583 0.91997 0.89516 1.44309 1.37312 1.35412 1.15788 1.19094 1.13808 1.06084 0.96022 0.90253 1.24808 0.98557 0.99401 0.97870 1.69759 1.24555 1.38729 1.24086 0.86030 0.77311 0.80890 0.81007 1.21539 1.21641 1.20675 1.21590 0.95810 0.94032 0.88072 1.22109 0.96616 0.99923 0.77915 0.88290 1.45904 1.20020 1.63728 1.07131 1.20553 0.83815 0.78192 0.87974 1.90690 1.28262 1.41534 1.78795 1.20946 0.86970 1.00119 0.90214 0.87346 1.22157 0.95241 1.03753 1.01112 1.47043 1.27700 1.08811 1.49052 1.21443 0.94993 0.91143 0.93374 1.21855 0.98670 0.98897 0.97655 1.21659 0.97785 0.95866 1.00912 1.21619 0.94882 0.99049 1.01495 1.19972 0.86119 0.81420 0.81327 1.90713 1.51977 1.59827 1.38054 0.93596 0.90339 0.94880 0.87016 0.95590 0.93618 0.95440 0.95050 0.77245 0.91260 0.89424 0.91852 0.91570 0.90687 0.89749 0.90966 0.90837 0.90656 0.88217 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.85 101.05 1.10 1.63 16 2 O -0.38 -7.36 10.51 -35.23 -0.37 -7.73 16 3 C 0.06 1.12 3.15 -24.58 -0.08 1.04 16 4 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 5 C 0.14 3.56 5.62 -2.53 -0.01 3.54 16 6 N -0.60 -15.82 3.39 -170.06 -0.58 -16.39 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 10 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 11 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.13 2.99 6.99 -3.06 -0.02 2.97 16 16 C 0.14 2.80 2.97 -66.09 -0.20 2.61 16 17 H 0.10 2.28 7.69 -51.93 -0.40 1.88 16 18 N -0.72 -11.53 5.02 -52.03 -0.26 -11.79 16 19 C 0.51 8.50 6.38 -10.98 -0.07 8.43 16 20 O -0.52 -10.95 14.17 -16.23 -0.23 -11.18 16 21 C 0.13 1.48 3.02 -69.08 -0.21 1.27 16 22 H 0.11 0.94 7.79 -51.93 -0.40 0.53 16 23 C -0.16 -1.74 8.97 37.16 0.33 -1.41 16 24 N -0.59 -6.76 2.60 -168.70 -0.44 -7.20 16 25 C 0.11 0.85 6.25 -4.49 -0.03 0.82 16 26 C -0.13 -0.74 6.02 -26.60 -0.16 -0.90 16 27 C -0.12 -0.86 6.04 -26.52 -0.16 -1.02 16 28 C -0.13 -1.25 6.03 -28.11 -0.17 -1.42 16 29 C 0.52 7.13 6.20 -11.88 -0.07 7.06 16 30 O -0.53 -9.60 12.77 -16.24 -0.21 -9.81 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.11 3.05 5.87 -51.93 -0.30 2.75 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.39 5.08 7.94 -40.82 -0.32 4.75 16 40 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 41 H 0.09 1.22 5.98 -51.93 -0.31 0.91 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.40 8.03 -51.92 -0.42 -0.02 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 47 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -36.81 392.20 -9.05 -45.86 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.41 Total: 3.78 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 0.00 Total: 17.79 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.72 Total: -61.74 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.81 Total: -28.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.81 -9.05 -45.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.073 kcal (2) G-P(sol) polarization free energy of solvation -36.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds