Wall clock time and date at job start Tue Mar 31 2020 22:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00064 * 2 1 4 4 H 1.09005 * 110.91397 * 26.10025 * 3 2 1 5 5 C 1.54910 * 111.00506 * 262.20031 * 3 2 1 6 6 N 1.47426 * 104.83438 * 204.91610 * 5 3 2 7 7 C 1.36928 * 125.65101 * 204.09573 * 6 5 3 8 8 H 1.08002 * 120.00165 * 180.02562 * 7 6 5 9 9 C 1.38815 * 120.00260 * 0.03524 * 7 6 5 10 10 N 1.31622 * 119.99693 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00352 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47410 * 90.00133 * 11 9 7 13 13 H 1.48507 * 109.46882 * 210.00084 * 11 9 7 14 14 H 1.48498 * 109.47145 * 329.99925 * 11 9 7 15 15 C 1.47027 * 108.70068 * 24.12653 * 6 5 3 16 16 C 1.54329 * 107.27332 * 358.94253 * 15 6 5 17 17 H 1.08997 * 110.71635 * 96.34319 * 16 15 6 18 18 N 1.46496 * 110.72041 * 219.44740 * 16 15 6 19 19 C 1.34774 * 119.99544 * 273.54376 * 18 16 15 20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.46953 * 299.99667 * 21 19 18 23 23 C 1.52997 * 109.47103 * 59.99861 * 21 19 18 24 24 N 1.46496 * 109.47106 * 179.97438 * 21 19 18 25 25 C 1.45757 * 117.94790 * 119.99776 * 24 21 19 26 26 C 1.52914 * 110.48916 * 160.92222 * 25 24 21 27 27 C 1.53347 * 108.67593 * 50.75625 * 26 25 24 28 28 C 1.53069 * 108.42223 * 292.46856 * 27 26 25 29 29 C 1.33351 * 117.95124 * 299.73474 * 24 21 19 30 30 O 1.21284 * 118.24113 * 2.22398 * 29 24 21 31 31 H 1.08998 * 109.47315 * 60.00000 * 1 2 3 32 32 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46688 * 299.99673 * 1 2 3 34 34 H 1.08999 * 110.37000 * 86.07613 * 5 3 2 35 35 H 1.09004 * 110.36616 * 323.75505 * 5 3 2 36 36 H 0.96994 * 120.00236 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.88353 * 239.52522 * 15 6 5 38 38 H 1.08994 * 110.01108 * 118.43230 * 15 6 5 39 39 H 0.96994 * 120.00700 * 93.54496 * 18 16 15 40 40 H 1.09000 * 109.47140 * 300.00046 * 23 21 19 41 41 H 1.08992 * 109.47280 * 59.99899 * 23 21 19 42 42 H 1.09002 * 109.46777 * 180.02562 * 23 21 19 43 43 H 1.09000 * 109.30381 * 281.23900 * 25 24 21 44 44 H 1.09009 * 109.29867 * 40.60904 * 25 24 21 45 45 H 1.08999 * 109.60349 * 170.51230 * 26 25 24 46 46 H 1.08998 * 109.60476 * 290.83272 * 26 25 24 47 47 H 1.08999 * 109.67284 * 52.19616 * 27 26 25 48 48 H 1.08995 * 109.67550 * 172.73227 * 27 26 25 49 49 H 1.08994 * 109.39952 * 169.02598 * 28 27 26 50 50 H 1.08998 * 109.40117 * 288.85475 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0329 0.4480 5 6 2.4154 1.7329 -1.4328 6 7 3.4909 2.7230 -1.2414 7 6 3.8429 3.7012 -2.1325 8 1 4.6492 4.3804 -1.8981 9 6 3.1634 3.8201 -3.3371 10 7 2.1803 2.9927 -3.6225 11 14 3.6441 5.1541 -4.5530 12 1 4.6832 4.6315 -5.4761 13 1 2.4499 5.5656 -5.3340 14 1 4.1811 6.3258 -3.8156 15 6 4.1233 2.4855 0.0645 16 6 3.3825 1.3033 0.7242 17 1 3.9136 0.3681 0.5469 18 7 3.2109 1.5357 2.1604 19 6 4.1857 1.1822 3.0213 20 8 5.2050 0.6721 2.6071 21 6 4.0090 1.4206 4.4989 22 1 3.8707 2.4864 4.6809 23 6 2.7813 0.6548 4.9959 24 7 5.1985 0.9528 5.2147 25 6 5.9501 1.9247 5.9990 26 6 6.8363 1.2153 7.0235 27 6 7.6504 0.1337 6.3032 28 6 6.6891 -0.9576 5.8256 29 6 5.5228 -0.3366 5.1123 30 8 4.8421 -1.0448 4.4009 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.5685 2.1874 -1.9469 35 1 2.7851 0.8749 -1.9943 36 1 1.7051 3.0760 -4.4640 37 1 4.0316 3.3749 0.6880 38 1 5.1753 2.2347 -0.0707 39 1 2.3958 1.9439 2.4917 40 1 1.8961 1.0025 4.4633 41 1 2.9195 -0.4108 4.8139 42 1 2.6533 0.8277 6.0645 43 1 6.5748 2.5196 5.3327 44 1 5.2544 2.5834 6.5190 45 1 7.5122 1.9361 7.4837 46 1 6.2129 0.7569 7.7911 47 1 8.1643 0.5704 5.4470 48 1 8.3800 -0.2949 6.9903 49 1 7.2140 -1.6313 5.1485 50 1 6.3240 -1.5199 6.6850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082383448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:47 Heat of formation + Delta-G solvation = -102.604148 kcal Electronic energy + Delta-G solvation = -31359.469739 eV Core-core repulsion = 27193.943798 eV Total energy + Delta-G solvation = -4165.525941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05558 -40.66546 -39.37927 -37.55001 -37.40377 -35.67224 -35.58090 -33.72085 -31.70215 -30.55925 -30.30030 -28.81202 -27.53218 -26.35420 -25.62324 -25.08817 -23.44914 -22.43409 -21.96338 -21.23550 -19.70144 -19.08024 -18.30897 -18.08435 -17.77642 -17.19734 -16.92015 -16.40631 -16.31540 -15.93550 -15.80520 -15.68107 -15.32650 -15.24281 -15.00441 -14.86608 -14.50429 -14.41589 -14.13673 -13.98325 -13.79354 -13.26478 -13.24620 -13.18175 -13.01745 -12.90198 -12.74976 -12.56486 -12.46488 -12.36474 -12.09592 -12.05479 -11.92050 -11.83188 -11.78346 -11.61357 -10.96035 -10.82211 -10.56568 -10.47394 -10.11601 -9.66247 -9.00512 -7.82536 -5.30616 1.45949 1.48900 1.57121 1.58789 1.69776 1.97138 2.24971 2.44058 2.73406 3.28091 3.53027 3.58744 3.70364 3.85659 3.88849 3.92083 3.92513 3.97025 4.02549 4.05374 4.14794 4.31967 4.45284 4.50844 4.52440 4.58961 4.62331 4.63632 4.72482 4.79637 4.81151 4.85289 4.90959 4.93054 4.94321 5.10686 5.13001 5.24951 5.26174 5.38644 5.41745 5.44423 5.50853 5.65177 6.16106 6.29618 6.51457 6.56754 7.01892 7.23645 7.36202 7.66315 8.29616 9.19141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.002921 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.656156 B = 9583.027685 C =10692.937050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.079 3.921 4 H 0.095 0.905 5 C 0.147 3.853 6 N -0.618 5.618 7 C -0.246 4.246 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.987 3.013 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.136 3.864 16 C 0.156 3.844 17 H 0.062 0.938 18 N -0.703 5.703 19 C 0.503 3.497 20 O -0.571 6.571 21 C 0.127 3.873 22 H 0.152 0.848 23 C -0.157 4.157 24 N -0.591 5.591 25 C 0.102 3.898 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.130 4.130 29 C 0.509 3.491 30 O -0.587 6.587 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.091 0.909 35 H -0.016 1.016 36 H 0.250 0.750 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.414 0.586 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -0.546 27.745 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.020 3.980 4 H 0.113 0.887 5 C 0.021 3.979 6 N -0.345 5.345 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.814 3.186 12 H -0.217 1.217 13 H -0.214 1.214 14 H -0.190 1.190 15 C 0.010 3.990 16 C 0.049 3.951 17 H 0.080 0.920 18 N -0.356 5.356 19 C 0.290 3.710 20 O -0.448 6.448 21 C 0.020 3.980 22 H 0.170 0.830 23 C -0.215 4.215 24 N -0.323 5.323 25 C -0.019 4.019 26 C -0.163 4.163 27 C -0.158 4.158 28 C -0.169 4.169 29 C 0.300 3.700 30 O -0.467 6.467 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.002 0.998 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.251 0.749 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.118 0.882 49 H 0.101 0.899 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.040 -1.370 26.948 27.060 hybrid contribution -0.077 0.488 -1.529 1.607 sum 1.963 -0.882 25.419 25.510 Atomic orbital electron populations 1.22997 0.79167 1.03865 1.00884 1.87867 1.21935 1.27065 1.94960 1.23618 0.93073 0.84843 0.96489 0.88736 1.22057 0.93337 0.90120 0.92373 1.44562 1.38022 1.35160 1.16794 1.19471 1.14207 1.06724 0.96990 0.89881 1.25699 0.98577 1.01686 0.99549 1.69996 1.25318 1.40128 1.24249 0.84962 0.76772 0.78481 0.78367 1.21713 1.21421 1.19031 1.21615 0.94637 0.95594 0.87185 1.21543 0.95917 0.97145 0.80475 0.91956 1.45690 1.21085 1.63702 1.05139 1.21619 0.82692 0.76607 0.90113 1.90671 1.30459 1.43657 1.80030 1.21144 0.87889 1.02737 0.86266 0.83041 1.22104 0.95060 1.01128 1.03163 1.47246 1.27722 1.08764 1.48561 1.21810 0.95753 0.90814 0.93502 1.21876 0.98655 0.98734 0.97067 1.21666 0.97703 0.95566 1.00904 1.21658 0.94054 0.99753 1.01478 1.20733 0.86448 0.82032 0.80835 1.90688 1.53948 1.61446 1.40635 0.94361 0.88124 0.91807 0.89169 0.99843 0.93978 0.93663 0.97384 0.74862 0.89579 0.93153 0.88908 0.92293 0.87369 0.87143 0.89705 0.92660 0.88198 0.89895 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.85 113.37 1.23 1.99 16 2 O -0.40 -15.58 10.51 -148.98 -1.57 -17.15 16 3 C 0.08 3.21 3.15 31.99 0.10 3.31 16 4 H 0.09 3.29 7.69 -2.38 -0.02 3.28 16 5 C 0.15 7.70 5.62 86.86 0.49 8.19 16 6 N -0.62 -33.59 3.39 -691.96 -2.35 -35.94 16 7 C -0.25 -14.14 10.27 84.04 0.86 -13.28 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 10 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 11 Si 0.99 45.84 29.55 68.60 2.03 47.87 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.14 6.34 6.99 86.73 0.61 6.95 16 16 C 0.16 6.44 2.97 46.18 0.14 6.58 16 17 H 0.06 3.06 7.69 -2.39 -0.02 3.04 16 18 N -0.70 -22.10 5.02 -436.91 -2.19 -24.29 16 19 C 0.50 16.64 6.38 87.66 0.56 17.20 16 20 O -0.57 -25.11 14.17 17.81 0.25 -24.86 16 21 C 0.13 2.72 3.02 44.25 0.13 2.85 16 22 H 0.15 1.93 7.79 -2.39 -0.02 1.92 16 23 C -0.16 -2.92 8.97 71.98 0.65 -2.28 16 24 N -0.59 -12.51 2.60 -806.83 -2.10 -14.61 16 25 C 0.10 1.20 6.25 86.49 0.54 1.74 16 26 C -0.13 -0.94 6.02 30.68 0.18 -0.76 16 27 C -0.12 -1.45 6.04 30.73 0.19 -1.26 16 28 C -0.13 -2.43 6.03 29.70 0.18 -2.25 16 29 C 0.51 13.93 6.20 87.71 0.54 14.48 16 30 O -0.59 -22.26 12.77 17.79 0.23 -22.03 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.09 5.12 5.87 -2.39 -0.01 5.11 16 35 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.05 1.95 8.03 -2.38 -0.02 1.93 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.41 9.59 7.94 -92.71 -0.74 8.85 16 40 H 0.09 1.28 7.56 -2.39 -0.02 1.26 16 41 H 0.05 1.38 5.98 -2.39 -0.01 1.36 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 0.59 8.03 -2.38 -0.02 0.57 16 45 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.08 0.49 8.13 -2.39 -0.02 0.47 16 47 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -87.39 392.20 1.58 -85.82 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.20 Total: 21.41 kcal Atomic # 6 Polarization: 33.49 SS G_CDS: 6.86 Total: 40.35 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -6.43 Total: -131.40 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -1.09 Total: -64.04 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -87.39 1.58 -85.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.788 kcal (2) G-P(sol) polarization free energy of solvation -87.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds