Wall clock time and date at job start Tue Mar 31 2020 22:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99558 * 2 1 4 4 H 1.08998 * 110.64229 * 26.86274 * 3 2 1 5 5 C 1.54339 * 111.00173 * 263.77901 * 3 2 1 6 6 N 1.47021 * 107.26633 * 219.60167 * 5 3 2 7 7 C 1.36931 * 125.64962 * 178.85047 * 6 5 3 8 8 H 1.08002 * 120.00438 * 179.69777 * 7 6 5 9 9 C 1.38817 * 119.99680 * 359.41735 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.47426 * 108.70417 * 358.58904 * 6 5 3 16 16 C 1.54919 * 104.83230 * 24.35268 * 15 6 5 17 17 H 1.08996 * 110.99960 * 81.10498 * 16 15 6 18 18 N 1.46494 * 111.00293 * 204.91880 * 16 15 6 19 19 C 1.34783 * 120.00058 * 273.54348 * 18 16 15 20 20 O 1.21288 * 119.99762 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00149 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.46493 * 60.00330 * 21 19 18 23 23 C 1.52997 * 109.47031 * 300.00231 * 21 19 18 24 24 N 1.46503 * 109.46979 * 180.02562 * 21 19 18 25 25 C 1.45748 * 117.94319 * 239.73860 * 24 21 19 26 26 C 1.53113 * 110.38310 * 160.74847 * 25 24 21 27 27 C 1.53339 * 108.52768 * 51.11129 * 26 25 24 28 28 C 1.53073 * 108.42880 * 292.31112 * 27 26 25 29 29 C 1.33352 * 117.94460 * 60.00440 * 24 21 19 30 30 O 1.21283 * 118.24802 * 2.23898 * 29 24 21 31 31 H 1.08996 * 109.47163 * 60.00059 * 1 2 3 32 32 H 1.08996 * 109.46589 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47220 * 300.00068 * 1 2 3 34 34 H 1.09000 * 109.98868 * 100.12714 * 5 3 2 35 35 H 1.09001 * 109.77953 * 338.95898 * 5 3 2 36 36 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 37 37 H 1.09003 * 110.37118 * 143.18886 * 15 6 5 38 38 H 1.08998 * 110.36604 * 265.40925 * 15 6 5 39 39 H 0.96996 * 120.00677 * 93.54970 * 18 16 15 40 40 H 1.09003 * 109.47104 * 60.00319 * 23 21 19 41 41 H 1.09002 * 109.46888 * 179.97438 * 23 21 19 42 42 H 1.08996 * 109.47436 * 300.00190 * 23 21 19 43 43 H 1.09001 * 109.30304 * 281.23411 * 25 24 21 44 44 H 1.08997 * 109.30277 * 40.61855 * 25 24 21 45 45 H 1.09006 * 109.80343 * 291.32435 * 26 25 24 46 46 H 1.08995 * 109.67835 * 170.82679 * 26 25 24 47 47 H 1.09003 * 109.67086 * 172.57803 * 27 26 25 48 48 H 1.09001 * 109.67530 * 52.05068 * 27 26 25 49 49 H 1.09001 * 109.39733 * 288.77699 * 28 27 26 50 50 H 1.08997 * 109.40001 * 169.03216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3351 2.0266 0.4609 5 6 2.3778 1.7474 -1.4324 6 7 3.6668 2.4502 -1.3550 7 6 4.3515 2.9806 -2.4155 8 1 5.2929 3.4845 -2.2531 9 6 3.8385 2.8656 -3.7003 10 7 2.6914 2.2515 -3.8983 11 14 4.7764 3.5824 -5.1481 12 1 6.1136 2.9429 -5.2371 13 1 4.0214 3.3288 -6.4014 14 1 4.9394 5.0460 -4.9565 15 6 4.0970 2.4949 0.0544 16 6 3.3816 1.2959 0.7256 17 1 3.9176 0.3658 0.5370 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1841 3.0165 20 8 5.2301 0.6947 2.5932 21 6 4.0340 1.4152 4.4959 22 1 3.1726 0.8520 4.8548 23 6 3.8131 2.9065 4.7570 24 7 5.2381 0.9695 5.2015 25 6 5.0937 -0.0788 6.2037 26 6 6.4462 -0.7404 6.4821 27 6 7.4735 0.3580 6.7814 28 6 7.7119 1.1599 5.4995 29 6 6.3965 1.5522 4.8902 30 8 6.3873 2.4469 4.0715 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6127 2.4182 -1.8233 35 1 2.4706 0.8725 -2.0759 36 1 2.3328 2.1715 -4.7961 37 1 5.1786 2.3790 0.1248 38 1 3.7856 3.4316 0.5166 39 1 2.3961 1.9128 2.5023 40 1 2.9174 3.2385 4.2320 41 1 3.6896 3.0736 5.8270 42 1 4.6745 3.4697 4.3979 43 1 4.7044 0.3547 7.1250 44 1 4.3945 -0.8315 5.8396 45 1 6.7646 -1.3111 5.6097 46 1 6.3598 -1.4045 7.3420 47 1 8.4090 -0.0944 7.1105 48 1 7.0899 1.0168 7.5605 49 1 8.2721 0.5506 4.7903 50 1 8.2839 2.0574 5.7350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082383449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:52 Heat of formation + Delta-G solvation = -76.351103 kcal Electronic energy + Delta-G solvation = -31398.581245 eV Core-core repulsion = 27234.193721 eV Total energy + Delta-G solvation = -4164.387523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03497 -39.23945 -37.93834 -36.51431 -35.85364 -34.73367 -33.96774 -31.82739 -30.68175 -29.63103 -28.65706 -27.06036 -26.09693 -24.97958 -24.55660 -23.92448 -22.58608 -20.71766 -20.45843 -19.79755 -18.58736 -17.56250 -17.16435 -16.71091 -16.36081 -15.93093 -15.49845 -15.40836 -14.72472 -14.65578 -14.43386 -14.34347 -14.20550 -14.05798 -13.91585 -13.57151 -13.41828 -13.17540 -12.82624 -12.47215 -12.34115 -12.22700 -11.99239 -11.81486 -11.75251 -11.47234 -11.29269 -11.26824 -11.20614 -11.15800 -10.95926 -10.73579 -10.69941 -10.12113 -9.94286 -9.73162 -9.67916 -9.45414 -9.09135 -8.70913 -8.67265 -8.50849 -6.82004 -5.67363 -3.01648 2.61165 2.85532 2.93721 3.45122 3.48034 3.49481 3.52156 4.16346 4.37313 4.41535 4.44144 4.55662 4.56951 4.79539 4.87791 4.94750 5.09502 5.16202 5.18140 5.21801 5.40791 5.42022 5.47359 5.53603 5.54729 5.59063 5.59596 5.62660 5.66910 5.69055 5.77292 5.89299 5.90565 5.93328 6.10481 6.13059 6.23990 6.34532 6.64792 6.78626 6.96052 7.29889 7.41575 7.53062 7.75021 7.79113 7.90679 8.25471 8.27066 8.55562 9.24188 9.84107 10.47848 11.44187 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003052 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.093068 B = 9170.695121 C =10423.862089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.166 3.834 6 N -0.601 5.601 7 C -0.226 4.226 8 H 0.080 0.920 9 C -0.008 4.008 10 N -0.924 5.924 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.133 3.867 16 C 0.138 3.862 17 H 0.101 0.899 18 N -0.716 5.716 19 C 0.510 3.490 20 O -0.519 6.519 21 C 0.126 3.874 22 H 0.107 0.893 23 C -0.167 4.167 24 N -0.593 5.593 25 C 0.116 3.884 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.133 4.133 29 C 0.525 3.475 30 O -0.529 6.529 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.393 0.607 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -5.361 25.718 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.354 4.354 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.572 5.572 11 Si 0.745 3.255 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.005 3.995 16 C 0.033 3.967 17 H 0.119 0.881 18 N -0.368 5.368 19 C 0.294 3.706 20 O -0.394 6.394 21 C 0.019 3.981 22 H 0.125 0.875 23 C -0.225 4.225 24 N -0.327 5.327 25 C -0.007 4.007 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.172 4.172 29 C 0.314 3.686 30 O -0.405 6.405 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.227 0.773 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.118 0.882 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.113 -5.424 24.743 25.331 hybrid contribution -0.345 0.618 -0.641 0.955 sum -0.458 -4.806 24.102 24.581 Atomic orbital electron populations 1.22704 0.81819 1.01987 0.99738 1.87910 1.19014 1.27684 1.95045 1.23846 0.92938 0.83910 0.99609 0.91996 1.21541 0.88243 0.97205 0.88974 1.44258 1.21265 1.66482 1.00842 1.19057 1.02444 1.29174 0.84739 0.90214 1.24807 0.97496 1.00789 0.97335 1.69930 1.19357 1.47355 1.20564 0.86152 0.78903 0.78695 0.81761 1.21071 1.21614 1.21151 1.21807 0.97977 0.93784 0.85913 1.22311 0.96113 1.00761 0.77544 0.88131 1.45854 1.18996 1.64681 1.07245 1.20590 0.83664 0.78117 0.88221 1.90700 1.27307 1.42929 1.78427 1.20947 0.88666 0.98006 0.90521 0.87483 1.22203 1.04276 0.93878 1.02118 1.47052 1.07038 1.38964 1.39669 1.21444 0.98444 0.89640 0.91127 1.21910 0.94342 0.98164 1.02995 1.21655 0.99860 0.97419 0.97069 1.21644 0.95017 1.02491 0.98080 1.19961 0.85083 0.81832 0.81746 1.90705 1.86276 1.30504 1.33043 0.93652 0.90291 0.94871 0.93454 0.91973 0.93691 0.93109 0.95964 0.77317 0.91347 0.91883 0.88998 0.91671 0.90830 0.90580 0.89843 0.90651 0.91233 0.88217 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -7.07 10.45 -35.23 -0.37 -7.44 16 3 C 0.06 1.09 3.05 -24.89 -0.08 1.02 16 4 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 5 C 0.17 4.16 5.16 -3.06 -0.02 4.15 16 6 N -0.60 -16.23 3.39 -170.06 -0.58 -16.81 16 7 C -0.23 -6.62 10.28 -15.06 -0.15 -6.77 16 8 H 0.08 2.28 7.83 -52.49 -0.41 1.86 16 9 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 10 N -0.92 -27.72 10.31 55.49 0.57 -27.15 16 11 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.13 3.08 6.93 -2.52 -0.02 3.07 16 16 C 0.14 2.76 3.04 -65.78 -0.20 2.56 16 17 H 0.10 2.30 7.73 -51.93 -0.40 1.90 16 18 N -0.72 -11.23 5.12 -51.73 -0.26 -11.49 16 19 C 0.51 8.35 6.41 -10.98 -0.07 8.28 16 20 O -0.52 -10.88 14.31 -15.20 -0.22 -11.10 16 21 C 0.13 1.47 3.02 -69.08 -0.21 1.26 16 22 H 0.11 0.88 7.79 -51.93 -0.40 0.47 16 23 C -0.17 -1.79 8.98 37.16 0.33 -1.46 16 24 N -0.59 -6.72 2.60 -168.58 -0.44 -7.16 16 25 C 0.12 0.84 6.26 -4.39 -0.03 0.81 16 26 C -0.14 -0.85 6.03 -26.50 -0.16 -1.01 16 27 C -0.12 -0.78 6.03 -26.52 -0.16 -0.94 16 28 C -0.13 -1.31 6.03 -28.10 -0.17 -1.48 16 29 C 0.53 7.25 6.12 -11.87 -0.07 7.18 16 30 O -0.53 -9.71 12.86 -15.20 -0.20 -9.91 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.39 8.11 -51.93 -0.42 -0.04 16 34 H 0.05 1.27 7.53 -51.93 -0.39 0.88 16 35 H 0.06 1.77 7.28 -51.93 -0.38 1.39 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.39 4.81 7.93 -40.82 -0.32 4.48 16 40 H 0.07 0.63 7.56 -51.93 -0.39 0.23 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.32 5.84 -51.93 -0.30 1.02 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.48 8.03 -51.93 -0.42 0.07 16 45 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -37.69 392.87 -9.04 -46.73 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.45 Total: 2.65 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 0.00 Total: 17.90 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.71 Total: -62.61 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.78 Total: -28.44 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.69 -9.04 -46.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.622 kcal (2) G-P(sol) polarization free energy of solvation -37.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds