Wall clock time and date at job start Tue Mar 31 2020 22:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99558 * 2 1 4 4 H 1.08998 * 110.64229 * 26.86274 * 3 2 1 5 5 C 1.54339 * 111.00173 * 263.77901 * 3 2 1 6 6 N 1.47021 * 107.26633 * 219.60167 * 5 3 2 7 7 C 1.36931 * 125.64962 * 178.85047 * 6 5 3 8 8 H 1.08002 * 120.00438 * 179.69777 * 7 6 5 9 9 C 1.38817 * 119.99680 * 359.41735 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.47426 * 108.70417 * 358.58904 * 6 5 3 16 16 C 1.54919 * 104.83230 * 24.35268 * 15 6 5 17 17 H 1.08996 * 110.99960 * 81.10498 * 16 15 6 18 18 N 1.46494 * 111.00293 * 204.91880 * 16 15 6 19 19 C 1.34783 * 120.00058 * 273.54348 * 18 16 15 20 20 O 1.21288 * 119.99762 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00149 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.46493 * 60.00330 * 21 19 18 23 23 C 1.52997 * 109.47031 * 300.00231 * 21 19 18 24 24 N 1.46503 * 109.46979 * 180.02562 * 21 19 18 25 25 C 1.45748 * 117.94319 * 239.73860 * 24 21 19 26 26 C 1.53113 * 110.38310 * 160.74847 * 25 24 21 27 27 C 1.53339 * 108.52768 * 51.11129 * 26 25 24 28 28 C 1.53073 * 108.42880 * 292.31112 * 27 26 25 29 29 C 1.33352 * 117.94460 * 60.00440 * 24 21 19 30 30 O 1.21283 * 118.24802 * 2.23898 * 29 24 21 31 31 H 1.08996 * 109.47163 * 60.00059 * 1 2 3 32 32 H 1.08996 * 109.46589 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47220 * 300.00068 * 1 2 3 34 34 H 1.09000 * 109.98868 * 100.12714 * 5 3 2 35 35 H 1.09001 * 109.77953 * 338.95898 * 5 3 2 36 36 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 37 37 H 1.09003 * 110.37118 * 143.18886 * 15 6 5 38 38 H 1.08998 * 110.36604 * 265.40925 * 15 6 5 39 39 H 0.96996 * 120.00677 * 93.54970 * 18 16 15 40 40 H 1.09003 * 109.47104 * 60.00319 * 23 21 19 41 41 H 1.09002 * 109.46888 * 179.97438 * 23 21 19 42 42 H 1.08996 * 109.47436 * 300.00190 * 23 21 19 43 43 H 1.09001 * 109.30304 * 281.23411 * 25 24 21 44 44 H 1.08997 * 109.30277 * 40.61855 * 25 24 21 45 45 H 1.09006 * 109.80343 * 291.32435 * 26 25 24 46 46 H 1.08995 * 109.67835 * 170.82679 * 26 25 24 47 47 H 1.09003 * 109.67086 * 172.57803 * 27 26 25 48 48 H 1.09001 * 109.67530 * 52.05068 * 27 26 25 49 49 H 1.09001 * 109.39733 * 288.77699 * 28 27 26 50 50 H 1.08997 * 109.40001 * 169.03216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3351 2.0266 0.4609 5 6 2.3778 1.7474 -1.4324 6 7 3.6668 2.4502 -1.3550 7 6 4.3515 2.9806 -2.4155 8 1 5.2929 3.4845 -2.2531 9 6 3.8385 2.8656 -3.7003 10 7 2.6914 2.2515 -3.8983 11 14 4.7764 3.5824 -5.1481 12 1 6.1136 2.9429 -5.2371 13 1 4.0214 3.3288 -6.4014 14 1 4.9394 5.0460 -4.9565 15 6 4.0970 2.4949 0.0544 16 6 3.3816 1.2959 0.7256 17 1 3.9176 0.3658 0.5370 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1841 3.0165 20 8 5.2301 0.6947 2.5932 21 6 4.0340 1.4152 4.4959 22 1 3.1726 0.8520 4.8548 23 6 3.8131 2.9065 4.7570 24 7 5.2381 0.9695 5.2015 25 6 5.0937 -0.0788 6.2037 26 6 6.4462 -0.7404 6.4821 27 6 7.4735 0.3580 6.7814 28 6 7.7119 1.1599 5.4995 29 6 6.3965 1.5522 4.8902 30 8 6.3873 2.4469 4.0715 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6127 2.4182 -1.8233 35 1 2.4706 0.8725 -2.0759 36 1 2.3328 2.1715 -4.7961 37 1 5.1786 2.3790 0.1248 38 1 3.7856 3.4316 0.5166 39 1 2.3961 1.9128 2.5023 40 1 2.9174 3.2385 4.2320 41 1 3.6896 3.0736 5.8270 42 1 4.6745 3.4697 4.3979 43 1 4.7044 0.3547 7.1250 44 1 4.3945 -0.8315 5.8396 45 1 6.7646 -1.3111 5.6097 46 1 6.3598 -1.4045 7.3420 47 1 8.4090 -0.0944 7.1105 48 1 7.0899 1.0168 7.5605 49 1 8.2721 0.5506 4.7903 50 1 8.2839 2.0574 5.7350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082383449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:51 Heat of formation + Delta-G solvation = -104.304670 kcal Electronic energy + Delta-G solvation = -31399.793402 eV Core-core repulsion = 27234.193721 eV Total energy + Delta-G solvation = -4165.599681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05133 -40.66356 -39.40187 -37.52965 -37.39487 -35.68074 -35.57048 -33.73476 -31.69333 -30.54439 -30.28483 -28.84608 -27.53165 -26.32005 -25.58529 -25.08427 -23.52541 -22.35042 -22.08871 -21.26581 -19.52878 -19.09295 -18.44153 -18.11876 -17.66496 -17.20607 -16.90374 -16.50832 -16.33162 -15.91375 -15.83147 -15.70242 -15.19371 -15.08486 -14.97858 -14.79350 -14.67622 -14.44498 -14.17160 -14.06794 -13.65147 -13.41399 -13.21702 -13.13518 -12.99150 -12.90237 -12.76218 -12.60380 -12.56698 -12.31745 -12.14167 -11.96535 -11.89647 -11.84387 -11.77195 -11.67428 -10.97343 -10.80461 -10.58131 -10.44783 -10.11506 -9.66479 -9.01310 -7.91250 -5.29802 1.41848 1.46469 1.52410 1.56861 1.70144 1.97989 2.24618 2.43931 2.74746 3.27154 3.48341 3.55544 3.71542 3.85082 3.87035 3.88515 3.92962 3.96541 4.05719 4.06315 4.15740 4.31628 4.44647 4.53153 4.55375 4.59675 4.62320 4.65640 4.73533 4.78245 4.82106 4.88464 4.90263 4.95040 4.96712 5.08948 5.15180 5.28554 5.30625 5.32882 5.37960 5.44518 5.52757 5.61218 6.09729 6.29694 6.52153 6.56714 7.01308 7.24179 7.36139 7.65027 8.28205 9.17944 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003052 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.093068 B = 9170.695121 C =10423.862089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.081 3.919 4 H 0.099 0.901 5 C 0.175 3.825 6 N -0.621 5.621 7 C -0.254 4.254 8 H 0.076 0.924 9 C -0.059 4.059 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.135 3.865 16 C 0.157 3.843 17 H 0.067 0.933 18 N -0.701 5.701 19 C 0.503 3.497 20 O -0.573 6.573 21 C 0.130 3.870 22 H 0.156 0.844 23 C -0.160 4.160 24 N -0.591 5.591 25 C 0.106 3.894 26 C -0.135 4.135 27 C -0.113 4.113 28 C -0.133 4.133 29 C 0.511 3.489 30 O -0.588 6.588 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.019 0.981 36 H 0.251 0.749 37 H 0.020 0.980 38 H 0.035 0.965 39 H 0.415 0.585 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -5.798 29.068 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.022 3.978 4 H 0.117 0.883 5 C 0.049 3.951 6 N -0.349 5.349 7 C -0.383 4.383 8 H 0.094 0.906 9 C -0.252 4.252 10 N -0.595 5.595 11 Si 0.810 3.190 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.009 3.991 16 C 0.050 3.950 17 H 0.085 0.915 18 N -0.354 5.354 19 C 0.289 3.711 20 O -0.450 6.450 21 C 0.022 3.978 22 H 0.173 0.827 23 C -0.218 4.218 24 N -0.324 5.324 25 C -0.015 4.015 26 C -0.173 4.173 27 C -0.150 4.150 28 C -0.173 4.173 29 C 0.301 3.699 30 O -0.468 6.468 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.840 -5.885 28.178 28.844 hybrid contribution 0.172 0.704 -1.675 1.825 sum -1.669 -5.181 26.503 27.056 Atomic orbital electron populations 1.23022 0.79104 1.04018 1.00914 1.87895 1.21969 1.26748 1.94913 1.23427 0.93319 0.85384 0.95691 0.88304 1.21314 0.86924 0.94724 0.92156 1.44518 1.22075 1.66473 1.01840 1.19389 1.02900 1.29879 0.86110 0.90587 1.25684 0.98503 1.01219 0.99823 1.70147 1.20505 1.47986 1.20831 0.85096 0.77495 0.78316 0.78067 1.20682 1.21208 1.19956 1.21832 0.96589 0.95839 0.84884 1.21684 0.95614 0.97487 0.80182 0.91511 1.45612 1.20110 1.64624 1.05091 1.21656 0.82518 0.76498 0.90401 1.90682 1.29400 1.45225 1.79714 1.21142 0.90412 0.99502 0.86726 0.82694 1.22152 1.03195 0.92457 1.04024 1.47254 1.06255 1.39167 1.39684 1.21847 0.99402 0.89059 0.91228 1.21946 0.93737 0.98221 1.03376 1.21651 1.01047 0.97218 0.95126 1.21680 0.92998 1.03043 0.99599 1.20677 0.86848 0.81200 0.81149 1.90682 1.87311 1.33173 1.35660 0.94714 0.87983 0.91344 0.95733 0.96309 0.94003 0.96174 0.94724 0.74713 0.89553 0.89028 0.93086 0.88346 0.89738 0.92798 0.86591 0.88860 0.89724 0.89484 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.40 -14.45 10.45 -148.98 -1.56 -16.01 16 3 C 0.08 3.14 3.05 31.79 0.10 3.24 16 4 H 0.10 3.12 7.68 -2.39 -0.02 3.10 16 5 C 0.17 9.11 5.16 86.73 0.45 9.56 16 6 N -0.62 -35.16 3.39 -691.94 -2.35 -37.51 16 7 C -0.25 -15.52 10.28 84.04 0.86 -14.66 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 10 N -0.95 -58.70 10.31 21.65 0.22 -58.47 16 11 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 15 C 0.14 6.59 6.93 86.86 0.60 7.19 16 16 C 0.16 6.42 3.04 46.39 0.14 6.57 16 17 H 0.07 3.21 7.73 -2.39 -0.02 3.19 16 18 N -0.70 -21.26 5.12 -435.94 -2.23 -23.49 16 19 C 0.50 16.29 6.41 87.66 0.56 16.85 16 20 O -0.57 -25.01 14.31 16.79 0.24 -24.77 16 21 C 0.13 2.69 3.02 44.24 0.13 2.83 16 22 H 0.16 1.75 7.79 -2.39 -0.02 1.73 16 23 C -0.16 -3.07 8.98 71.98 0.65 -2.42 16 24 N -0.59 -12.35 2.60 -806.45 -2.10 -14.45 16 25 C 0.11 1.14 6.26 86.56 0.54 1.68 16 26 C -0.14 -1.30 6.03 30.75 0.19 -1.11 16 27 C -0.11 -1.16 6.03 30.73 0.19 -0.98 16 28 C -0.13 -2.65 6.03 29.71 0.18 -2.47 16 29 C 0.51 14.28 6.12 87.71 0.54 14.82 16 30 O -0.59 -22.76 12.86 16.81 0.22 -22.54 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 1.30 8.11 -2.39 -0.02 1.29 16 34 H 0.02 1.37 7.53 -2.39 -0.02 1.35 16 35 H 0.02 1.12 7.28 -2.39 -0.02 1.11 16 36 H 0.25 14.99 8.31 -92.70 -0.77 14.21 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 8.87 7.93 -92.71 -0.74 8.14 16 40 H 0.09 1.30 7.56 -2.39 -0.02 1.28 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.46 5.84 -2.39 -0.01 1.45 16 43 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 0.77 8.03 -2.39 -0.02 0.75 16 45 H 0.05 0.77 8.12 -2.38 -0.02 0.75 16 46 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 49 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -90.94 392.87 1.48 -89.46 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.20 Total: 17.74 kcal Atomic # 6 Polarization: 33.10 SS G_CDS: 6.82 Total: 39.91 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -6.46 Total: -133.93 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -1.10 Total: -63.31 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -90.94 1.48 -89.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.843 kcal (2) G-P(sol) polarization free energy of solvation -90.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds