Wall clock time and date at job start Tue Mar 31 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99805 * 2 1 4 4 O 1.42903 * 109.46710 * 135.00209 * 3 2 1 5 5 C 1.42905 * 113.99741 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47054 * 329.99825 * 5 4 3 7 7 C 1.52997 * 109.47264 * 90.00040 * 5 4 3 8 8 C 1.50699 * 109.46972 * 209.99981 * 5 4 3 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 5 4 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 5 4 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 5 12 12 C 1.52996 * 109.46993 * 180.02562 * 11 10 8 13 13 C 1.53778 * 113.61513 * 274.13614 * 12 11 10 14 14 C 1.53955 * 87.01980 * 220.05260 * 13 12 11 15 15 N 1.46898 * 113.74537 * 139.94507 * 14 13 12 16 16 C 1.46901 * 111.00058 * 107.40046 * 15 14 13 17 17 C 1.50702 * 109.47076 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99818 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99875 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00104 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99804 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99511 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99958 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47216 * 89.99714 * 24 22 20 26 26 H 1.48497 * 109.46714 * 209.99747 * 24 22 20 27 27 H 1.48498 * 109.47375 * 329.99609 * 24 22 20 28 28 C 1.53778 * 113.61147 * 176.52756 * 12 11 10 29 29 H 1.07997 * 119.99533 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00050 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00440 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47219 * 15.00400 * 3 2 1 33 33 H 1.08993 * 109.47024 * 254.99946 * 3 2 1 34 34 H 1.08992 * 109.47303 * 59.99596 * 7 5 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.46832 * 299.99892 * 7 5 4 37 37 H 0.96996 * 119.99844 * 0.02562 * 10 8 5 38 38 H 1.09004 * 109.47042 * 300.00295 * 11 10 8 39 39 H 1.09004 * 109.46923 * 59.99881 * 11 10 8 40 40 H 1.09001 * 112.85212 * 45.33763 * 12 11 10 41 41 H 1.09000 * 113.61531 * 334.56905 * 13 12 11 42 42 H 1.08993 * 113.61369 * 105.47475 * 13 12 11 43 43 H 1.09011 * 113.53644 * 270.81248 * 14 13 12 44 44 H 1.00901 * 110.99928 * 343.44781 * 15 14 13 45 45 H 1.09002 * 109.46937 * 300.00095 * 16 15 14 46 46 H 1.09007 * 109.47220 * 60.00270 * 16 15 14 47 47 H 0.97001 * 120.00083 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99551 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.61626 * 254.53098 * 28 12 11 50 50 H 1.09006 * 113.61746 * 25.43213 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 1 3.9128 2.9321 0.0626 7 6 3.3030 3.3708 2.0817 8 6 5.3201 2.0863 1.4258 9 8 5.6275 0.9290 1.6187 10 7 6.2417 3.0601 1.5630 11 6 7.6146 2.7209 1.9455 12 6 8.4508 3.9992 2.0312 13 6 9.0506 4.4345 0.6839 14 6 10.3283 4.7988 1.4617 15 7 11.5692 4.4423 0.7610 16 6 12.2474 5.6404 0.2487 17 6 13.5134 5.2360 -0.4616 18 8 13.8204 4.0648 -0.5344 19 7 14.3046 6.1757 -1.0161 20 6 15.4562 5.8078 -1.6628 21 1 15.7295 4.7649 -1.7275 22 6 16.2716 6.7766 -2.2349 23 7 17.3756 6.4239 -2.8543 24 14 15.7992 8.5803 -2.1222 25 1 16.3847 9.1694 -0.8912 26 1 16.3174 9.3028 -3.3116 27 1 14.3200 8.7026 -2.0744 28 6 9.8927 3.7611 2.5098 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3855 2.1161 0.2661 33 1 2.4755 1.4868 -0.9926 34 1 3.2979 2.8741 3.0518 35 1 3.8985 4.2818 2.1426 36 1 2.2815 3.6233 1.7975 37 1 5.9958 3.9857 1.4091 38 1 7.6093 2.2247 2.9161 39 1 8.0455 2.0538 1.1988 40 1 7.9416 4.8033 2.5627 41 1 9.1869 3.6129 -0.0193 42 1 8.5487 5.2941 0.2398 43 1 10.3329 5.8224 1.8364 44 1 11.3887 3.7836 0.0184 45 1 11.5896 6.1603 -0.4479 46 1 12.4928 6.3022 1.0794 47 1 14.0589 7.1123 -0.9582 48 1 17.9451 7.1002 -3.2533 49 1 10.0696 4.0779 3.5376 50 1 10.2596 2.7550 2.3068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101057179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:30 Heat of formation + Delta-G solvation = -72.141258 kcal Electronic energy + Delta-G solvation = -27994.844783 eV Core-core repulsion = 23830.639812 eV Total energy + Delta-G solvation = -4164.204971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48167 -39.53838 -38.36355 -38.08270 -35.18861 -34.54877 -34.11218 -33.34396 -31.77093 -31.63092 -28.36627 -26.76419 -26.46187 -25.84153 -24.43233 -23.73299 -21.68597 -20.99287 -20.48348 -19.86475 -19.27591 -18.28387 -17.69416 -17.66299 -16.48240 -16.12765 -16.04475 -15.68052 -15.60612 -15.34235 -14.88650 -14.80964 -14.60690 -14.19938 -13.97475 -13.71058 -13.47680 -13.33805 -13.08604 -12.91749 -12.70967 -12.60176 -12.57380 -12.49550 -12.21175 -12.01624 -11.84441 -11.68278 -11.42986 -11.19497 -11.11587 -10.75122 -10.64931 -10.61388 -10.54710 -9.98251 -9.93405 -9.77972 -9.58081 -9.39499 -8.58319 -8.19497 -8.09711 -6.31682 -3.83111 1.62030 2.26926 2.51764 3.00742 3.05673 3.13771 3.45434 3.73472 4.06580 4.10151 4.14833 4.29343 4.32541 4.39912 4.44513 4.51820 4.58890 4.63108 4.73354 4.80549 4.90186 4.93736 4.99109 5.01615 5.13184 5.18255 5.22335 5.37019 5.41398 5.51397 5.53361 5.60255 5.63581 5.65187 5.75061 5.87410 5.92005 5.95726 6.07104 6.08625 6.12301 6.22064 6.56643 7.11665 7.15119 7.56607 7.58699 7.87774 8.14244 8.59264 8.94568 9.41901 9.82309 10.81527 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.001432 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.099731 B =19554.051491 C =19814.202284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.070 3.930 6 H 0.088 0.912 7 C -0.171 4.171 8 C 0.511 3.489 9 O -0.517 6.517 10 N -0.726 5.726 11 C 0.131 3.869 12 C -0.124 4.124 13 C -0.166 4.166 14 C 0.068 3.932 15 N -0.657 5.657 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.116 4.116 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.071 0.929 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.080 -0.272 8.984 35.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.009 3.991 6 H 0.106 0.894 7 C -0.228 4.228 8 C 0.296 3.704 9 O -0.391 6.391 10 N -0.380 5.380 11 C 0.008 3.992 12 C -0.144 4.144 13 C -0.205 4.205 14 C -0.043 4.043 15 N -0.288 5.288 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.155 4.155 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -32.992 -2.075 9.623 34.429 hybrid contribution -0.969 2.517 -1.061 2.899 sum -33.961 0.442 8.561 35.026 Atomic orbital electron populations 1.23847 0.95475 1.02350 1.00005 1.22726 0.95595 0.98218 1.00232 1.21683 0.88864 0.96247 0.92278 1.88088 1.43935 1.34939 1.60139 1.21899 0.89605 0.87445 1.00187 0.89448 1.22245 1.01876 0.98813 0.99911 1.20365 0.86443 0.85818 0.77779 1.90751 1.80685 1.19353 1.48326 1.45946 1.10630 1.09924 1.71512 1.21416 0.79868 0.96803 1.01072 1.22661 0.95968 0.97143 0.98587 1.23878 0.98523 1.01654 0.96439 1.23029 0.86933 0.98719 0.95599 1.60007 1.22271 1.13046 1.33500 1.21750 0.95046 0.93025 0.98691 1.19750 0.86116 0.86603 0.84089 1.90570 1.74118 1.17845 1.62097 1.42210 1.22422 1.07297 1.51112 1.19446 0.96529 0.97358 1.30112 0.86283 1.25038 0.95723 0.98429 0.96939 1.69626 1.12531 1.34231 1.35746 0.86666 0.78560 0.85233 0.78870 1.19590 1.20201 1.19581 1.23053 0.92270 1.01007 0.99157 0.87651 0.88433 0.86317 0.92528 0.92048 0.90932 0.90886 0.91171 0.76642 0.91168 0.90985 0.88689 0.89495 0.91551 0.88654 0.82594 0.93780 0.89521 0.79714 0.91619 0.90997 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 14.31 29.01 0.42 -0.50 16 2 C -0.15 -1.01 9.89 -36.02 -0.36 -1.36 16 3 C 0.09 0.56 6.16 36.01 0.22 0.78 16 4 O -0.35 -3.41 9.50 -55.14 -0.52 -3.94 16 5 C 0.07 0.50 3.14 -27.88 -0.09 0.41 16 6 H 0.09 0.41 7.79 -51.93 -0.40 0.00 16 7 C -0.17 -0.79 9.42 37.16 0.35 -0.44 16 8 C 0.51 5.10 7.23 -10.99 -0.08 5.02 16 9 O -0.52 -7.78 16.50 -14.35 -0.24 -8.02 16 10 N -0.73 -5.18 5.45 -60.29 -0.33 -5.51 16 11 C 0.13 1.09 5.50 -4.04 -0.02 1.07 16 12 C -0.12 -0.87 3.75 -89.81 -0.34 -1.21 16 13 C -0.17 -1.37 7.27 -25.83 -0.19 -1.56 16 14 C 0.07 0.71 4.18 -66.81 -0.28 0.43 16 15 N -0.66 -9.71 6.24 -107.03 -0.67 -10.37 16 16 C 0.05 0.76 6.01 -4.97 -0.03 0.73 16 17 C 0.45 10.11 7.82 -10.99 -0.09 10.03 16 18 O -0.56 -15.18 15.78 5.55 0.09 -15.10 16 19 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 20 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 23 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 24 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 C -0.12 -1.06 7.44 -25.92 -0.19 -1.26 16 29 H 0.11 0.43 8.06 -52.49 -0.42 0.01 16 30 H 0.10 0.38 7.90 -52.49 -0.41 -0.04 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.06 0.26 7.59 -51.93 -0.39 -0.13 16 33 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.19 7.57 -51.93 -0.39 -0.20 16 36 H 0.07 0.25 7.87 -51.93 -0.41 -0.16 16 37 H 0.40 1.64 7.89 -40.82 -0.32 1.32 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.82 7.61 -51.93 -0.40 0.42 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.89 7.87 -51.92 -0.41 0.48 16 44 H 0.35 5.50 7.91 -39.29 -0.31 5.19 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 47 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 417.38 15.07 6.29 6.29 Total: -1.00 -36.62 417.38 -8.59 -45.21 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.30 Total: 11.58 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.92 Total: 4.38 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.28 Total: -54.90 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.67 Total: -27.05 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.62 -8.59 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101057179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.929 kcal (2) G-P(sol) polarization free energy of solvation -36.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds