Wall clock time and date at job start Tue Mar 31 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99805 * 2 1 4 4 O 1.42903 * 109.46710 * 135.00209 * 3 2 1 5 5 C 1.42905 * 113.99741 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47054 * 329.99825 * 5 4 3 7 7 C 1.52997 * 109.47264 * 90.00040 * 5 4 3 8 8 C 1.50699 * 109.46972 * 209.99981 * 5 4 3 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 5 4 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 5 4 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 5 12 12 C 1.52996 * 109.46993 * 180.02562 * 11 10 8 13 13 C 1.53778 * 113.61513 * 274.13614 * 12 11 10 14 14 C 1.53955 * 87.01980 * 220.05260 * 13 12 11 15 15 N 1.46898 * 113.74537 * 139.94507 * 14 13 12 16 16 C 1.46901 * 111.00058 * 107.40046 * 15 14 13 17 17 C 1.50702 * 109.47076 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99818 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99875 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00104 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99804 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99511 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99958 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47216 * 89.99714 * 24 22 20 26 26 H 1.48497 * 109.46714 * 209.99747 * 24 22 20 27 27 H 1.48498 * 109.47375 * 329.99609 * 24 22 20 28 28 C 1.53778 * 113.61147 * 176.52756 * 12 11 10 29 29 H 1.07997 * 119.99533 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00050 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00440 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47219 * 15.00400 * 3 2 1 33 33 H 1.08993 * 109.47024 * 254.99946 * 3 2 1 34 34 H 1.08992 * 109.47303 * 59.99596 * 7 5 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.46832 * 299.99892 * 7 5 4 37 37 H 0.96996 * 119.99844 * 0.02562 * 10 8 5 38 38 H 1.09004 * 109.47042 * 300.00295 * 11 10 8 39 39 H 1.09004 * 109.46923 * 59.99881 * 11 10 8 40 40 H 1.09001 * 112.85212 * 45.33763 * 12 11 10 41 41 H 1.09000 * 113.61531 * 334.56905 * 13 12 11 42 42 H 1.08993 * 113.61369 * 105.47475 * 13 12 11 43 43 H 1.09011 * 113.53644 * 270.81248 * 14 13 12 44 44 H 1.00901 * 110.99928 * 343.44781 * 15 14 13 45 45 H 1.09002 * 109.46937 * 300.00095 * 16 15 14 46 46 H 1.09007 * 109.47220 * 60.00270 * 16 15 14 47 47 H 0.97001 * 120.00083 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99551 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.61626 * 254.53098 * 28 12 11 50 50 H 1.09006 * 113.61746 * 25.43213 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 1 3.9128 2.9321 0.0626 7 6 3.3030 3.3708 2.0817 8 6 5.3201 2.0863 1.4258 9 8 5.6275 0.9290 1.6187 10 7 6.2417 3.0601 1.5630 11 6 7.6146 2.7209 1.9455 12 6 8.4508 3.9992 2.0312 13 6 9.0506 4.4345 0.6839 14 6 10.3283 4.7988 1.4617 15 7 11.5692 4.4423 0.7610 16 6 12.2474 5.6404 0.2487 17 6 13.5134 5.2360 -0.4616 18 8 13.8204 4.0648 -0.5344 19 7 14.3046 6.1757 -1.0161 20 6 15.4562 5.8078 -1.6628 21 1 15.7295 4.7649 -1.7275 22 6 16.2716 6.7766 -2.2349 23 7 17.3756 6.4239 -2.8543 24 14 15.7992 8.5803 -2.1222 25 1 16.3847 9.1694 -0.8912 26 1 16.3174 9.3028 -3.3116 27 1 14.3200 8.7026 -2.0744 28 6 9.8927 3.7611 2.5098 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3855 2.1161 0.2661 33 1 2.4755 1.4868 -0.9926 34 1 3.2979 2.8741 3.0518 35 1 3.8985 4.2818 2.1426 36 1 2.2815 3.6233 1.7975 37 1 5.9958 3.9857 1.4091 38 1 7.6093 2.2247 2.9161 39 1 8.0455 2.0538 1.1988 40 1 7.9416 4.8033 2.5627 41 1 9.1869 3.6129 -0.0193 42 1 8.5487 5.2941 0.2398 43 1 10.3329 5.8224 1.8364 44 1 11.3887 3.7836 0.0184 45 1 11.5896 6.1603 -0.4479 46 1 12.4928 6.3022 1.0794 47 1 14.0589 7.1123 -0.9582 48 1 17.9451 7.1002 -3.2533 49 1 10.0696 4.0779 3.5376 50 1 10.2596 2.7550 2.3068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101057179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:29 Heat of formation + Delta-G solvation = -101.547197 kcal Electronic energy + Delta-G solvation = -27996.119920 eV Core-core repulsion = 23830.639812 eV Total energy + Delta-G solvation = -4165.480108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20547 -40.50781 -39.86009 -38.80811 -36.25581 -35.85181 -35.02126 -34.47914 -33.72131 -32.27175 -29.32756 -27.86049 -27.16258 -26.53216 -25.67990 -24.73981 -22.48509 -21.66359 -21.34834 -20.98009 -20.58580 -20.00702 -18.32164 -18.24910 -17.67843 -17.10361 -16.99951 -16.70654 -16.49045 -16.26577 -16.17242 -15.76504 -15.47544 -15.30024 -15.09674 -14.81896 -14.47459 -14.28175 -14.07961 -14.00627 -13.74492 -13.59360 -13.41586 -13.31287 -13.03513 -12.97230 -12.84663 -12.64449 -12.48287 -12.40724 -11.98280 -11.87972 -11.83285 -11.51550 -11.47400 -11.26896 -11.21721 -10.60407 -10.40886 -10.26816 -10.24603 -10.12592 -9.18718 -8.41025 -6.02370 1.18166 1.30500 1.36961 1.45719 1.53740 1.92175 1.96720 2.23995 2.77644 2.96602 3.15468 3.42388 3.57167 3.64288 3.73685 3.89234 3.97171 3.99559 4.06460 4.09394 4.20124 4.20765 4.30340 4.39977 4.45337 4.49909 4.55883 4.59383 4.70328 4.72404 4.80118 4.87994 4.91643 4.95817 4.98218 5.15581 5.20322 5.24952 5.36804 5.49320 5.55889 5.64337 5.68757 5.93447 6.09385 6.20318 6.42304 6.54702 6.60735 6.88606 7.21613 7.40361 7.97774 8.76865 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.001432 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.099731 B =19554.051491 C =19814.202284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.083 3.917 4 O -0.390 6.390 5 C 0.070 3.930 6 H 0.117 0.883 7 C -0.164 4.164 8 C 0.504 3.496 9 O -0.580 6.580 10 N -0.707 5.707 11 C 0.133 3.867 12 C -0.100 4.100 13 C -0.159 4.159 14 C 0.064 3.936 15 N -0.681 5.681 16 C 0.064 3.936 17 C 0.445 3.555 18 O -0.618 6.618 19 N -0.590 5.590 20 C -0.332 4.332 21 H 0.052 0.948 22 C -0.015 4.015 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.228 1.228 28 C -0.123 4.123 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.343 0.657 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.391 0.609 48 H 0.279 0.721 49 H 0.081 0.919 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.723 4.554 9.879 39.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.008 3.992 4 O -0.309 6.309 5 C 0.009 3.991 6 H 0.134 0.866 7 C -0.222 4.222 8 C 0.291 3.709 9 O -0.459 6.459 10 N -0.361 5.361 11 C 0.009 3.991 12 C -0.118 4.118 13 C -0.198 4.198 14 C -0.046 4.046 15 N -0.312 5.312 16 C -0.069 4.069 17 C 0.233 3.767 18 O -0.503 6.503 19 N -0.232 5.232 20 C -0.461 4.461 21 H 0.070 0.930 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.162 4.162 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.137 0.863 44 H 0.162 0.838 45 H 0.097 0.903 46 H 0.134 0.866 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -36.678 2.807 10.534 38.264 hybrid contribution 0.181 0.832 -1.329 1.579 sum -36.497 3.640 9.205 37.816 Atomic orbital electron populations 1.24059 0.94866 1.03583 0.97532 1.22774 0.96386 0.98004 1.02613 1.21831 0.88590 0.96701 0.92091 1.88051 1.45015 1.36703 1.61150 1.22087 0.87454 0.87232 1.02357 0.86559 1.22245 1.03205 0.98806 0.97938 1.21092 0.87967 0.85211 0.76642 1.90722 1.81879 1.21978 1.51346 1.45777 1.09661 1.10570 1.70068 1.21291 0.80692 0.97344 0.99745 1.22550 0.94495 0.96894 0.97909 1.23782 0.97587 1.01873 0.96526 1.23243 0.85633 1.00011 0.95698 1.60021 1.24999 1.12789 1.33383 1.21685 0.91746 0.93867 0.99566 1.21152 0.87437 0.85617 0.82486 1.90548 1.75726 1.20436 1.63579 1.42026 1.21325 1.08633 1.51210 1.19021 0.99389 0.95011 1.32705 0.92958 1.26155 0.94873 1.05018 0.95331 1.69817 1.14195 1.36837 1.36785 0.85333 0.80758 0.76005 0.79202 1.18123 1.20071 1.15164 1.23061 0.93845 0.99680 0.99588 0.86924 0.86635 0.88169 0.90183 0.91435 0.92842 0.88244 0.89475 0.74323 0.92293 0.93412 0.85444 0.91288 0.89216 0.86299 0.83760 0.90311 0.86640 0.77363 0.91147 0.90042 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 14.31 67.78 0.97 -0.47 16 2 C -0.18 -2.40 9.89 25.65 0.25 -2.15 16 3 C 0.08 1.00 6.16 71.24 0.44 1.44 16 4 O -0.39 -7.48 9.50 -129.94 -1.23 -8.71 16 5 C 0.07 0.88 3.14 29.85 0.09 0.97 16 6 H 0.12 0.74 7.79 -2.38 -0.02 0.73 16 7 C -0.16 -1.07 9.42 71.98 0.68 -0.39 16 8 C 0.50 9.88 7.23 87.66 0.63 10.51 16 9 O -0.58 -18.44 16.50 16.00 0.26 -18.17 16 10 N -0.71 -8.82 5.45 -463.05 -2.52 -11.34 16 11 C 0.13 2.12 5.50 86.38 0.47 2.60 16 12 C -0.10 -1.11 3.75 -10.27 -0.04 -1.15 16 13 C -0.16 -2.15 7.27 31.18 0.23 -1.92 16 14 C 0.06 1.12 4.18 45.50 0.19 1.31 16 15 N -0.68 -19.11 6.24 -492.52 -3.08 -22.19 16 16 C 0.06 1.84 6.01 85.56 0.51 2.35 16 17 C 0.44 19.99 7.82 87.66 0.69 20.68 16 18 O -0.62 -34.76 15.78 -3.06 -0.05 -34.81 16 19 N -0.59 -27.62 5.09 -306.98 -1.56 -29.18 16 20 C -0.33 -19.56 10.16 84.04 0.85 -18.70 16 21 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.94 -56.60 13.96 21.67 0.30 -56.30 16 24 Si 0.97 38.18 27.74 68.60 1.90 40.08 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 28 C -0.12 -2.04 7.44 31.12 0.23 -1.81 16 29 H 0.11 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.12 0.59 7.90 -2.91 -0.02 0.57 16 31 H 0.10 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.08 0.54 7.59 -2.39 -0.02 0.52 16 33 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.09 7.57 -2.39 -0.02 0.07 16 36 H 0.09 0.30 7.87 -2.39 -0.02 0.28 16 37 H 0.42 1.86 7.89 -92.71 -0.73 1.13 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.05 1.01 7.88 -2.39 -0.02 0.99 16 40 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 1.22 7.61 -2.39 -0.02 1.21 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 1.59 7.87 -2.38 -0.02 1.57 16 44 H 0.34 10.71 7.91 -89.69 -0.71 10.00 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.12 2.74 8.13 -2.38 -0.02 2.72 16 47 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.07 1.47 8.10 -2.38 -0.02 1.45 16 Total: -1.00 -90.18 417.38 -0.38 -90.56 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -1.08 Total: 37.18 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.67 Total: 12.88 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -6.86 Total: -119.01 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.02 Total: -61.70 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -90.18 -0.38 -90.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101057179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.985 kcal (2) G-P(sol) polarization free energy of solvation -90.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds