Wall clock time and date at job start Tue Mar 31 2020 22:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00078 * 2 1 4 4 H 1.08995 * 109.47095 * 29.99561 * 3 2 1 5 5 C 1.53003 * 109.46759 * 270.00024 * 3 2 1 6 6 C 1.50699 * 109.47470 * 150.00296 * 3 2 1 7 7 O 1.21286 * 119.99519 * 4.99603 * 6 3 2 8 8 N 1.34768 * 119.99963 * 184.99953 * 6 3 2 9 9 C 1.47210 * 126.70660 * 359.97387 * 8 6 3 10 10 C 1.53764 * 106.40333 * 148.69363 * 9 8 6 11 11 H 1.09004 * 112.03188 * 140.94650 * 10 9 8 12 12 C 1.54295 * 109.08408 * 266.67163 * 10 9 8 13 13 N 1.48528 * 104.69118 * 136.30392 * 12 10 9 14 14 C 1.46898 * 111.00180 * 200.77132 * 13 12 10 15 15 C 1.50702 * 109.47219 * 290.12481 * 14 13 12 16 16 O 1.21292 * 119.99662 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00042 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00237 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99467 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99304 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00603 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46922 * 90.00071 * 22 20 18 24 24 H 1.48497 * 109.47194 * 210.00483 * 22 20 18 25 25 H 1.48498 * 109.46864 * 330.00254 * 22 20 18 26 26 C 1.48524 * 104.20836 * 320.32366 * 13 12 10 27 27 C 1.54307 * 104.69039 * 39.67711 * 26 13 12 28 28 C 1.52997 * 112.04775 * 97.98720 * 27 26 13 29 29 C 1.48055 * 127.12332 * 181.08400 * 8 6 3 30 30 H 1.09005 * 109.46917 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47097 * 60.00409 * 1 2 3 32 32 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47009 * 60.00392 * 5 3 2 34 34 H 1.09004 * 109.46948 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47595 * 299.99978 * 5 3 2 36 36 H 1.08997 * 110.06514 * 29.45842 * 9 8 6 37 37 H 1.08993 * 110.11563 * 267.95910 * 9 8 6 38 38 H 1.09001 * 110.39621 * 255.10607 * 12 10 9 39 39 H 1.09007 * 110.39501 * 17.38872 * 12 10 9 40 40 H 1.09001 * 109.47129 * 50.12733 * 14 13 12 41 41 H 1.09000 * 109.47127 * 170.12632 * 14 13 12 42 42 H 0.96997 * 120.00040 * 0.02562 * 17 15 14 43 43 H 0.97006 * 119.99586 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.39209 * 280.87345 * 26 13 12 45 45 H 1.08995 * 110.39145 * 158.48046 * 26 13 12 46 46 H 1.09002 * 109.47153 * 302.31995 * 28 27 26 47 47 H 1.09001 * 109.46832 * 182.32186 * 28 27 26 48 48 H 1.09004 * 109.47261 * 62.32168 * 28 27 26 49 49 H 1.08997 * 111.55900 * 92.09254 * 29 8 6 50 50 H 1.09000 * 108.98134 * 330.30962 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2639 0.7103 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9222 9 6 3.6199 3.7622 0.5249 10 6 4.2032 4.7158 1.5807 11 1 4.5769 5.6384 1.1365 12 6 3.1454 4.9630 2.6765 13 7 3.8975 4.8702 3.9539 14 6 2.9935 4.5934 5.0782 15 6 2.1405 5.8063 5.3473 16 8 2.2724 6.8030 4.6688 17 7 1.2305 5.7830 6.3411 18 6 0.4541 6.8863 6.5855 19 1 0.5715 7.7738 5.9815 20 6 -0.4838 6.8624 7.6105 21 7 -1.2283 7.9198 7.8445 22 14 -0.6873 5.3272 8.6549 23 1 0.2234 5.4005 9.8255 24 1 -2.0924 5.2316 9.1260 25 1 -0.3548 4.1288 7.8434 26 6 4.8415 3.7436 3.7401 27 6 5.3251 3.9093 2.2841 28 6 6.6798 4.6160 2.2059 29 6 5.3453 2.5433 1.5784 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2568 1.8014 -1.9563 34 1 2.6606 2.7673 -1.4426 35 1 2.8828 1.0774 -1.9564 36 1 2.5328 3.8390 0.5114 37 1 4.0237 4.0013 -0.4589 38 1 2.7074 5.9549 2.5649 39 1 2.3691 4.1989 2.6344 40 1 2.3534 3.7468 4.8298 41 1 3.5798 4.3573 5.9662 42 1 1.1248 4.9858 6.8834 43 1 -1.8833 7.9031 8.5598 44 1 4.3288 2.7897 3.8638 45 1 5.6821 3.8163 4.4301 46 1 6.6096 5.5908 2.6886 47 1 6.9612 4.7475 1.1610 48 1 7.4339 4.0133 2.7121 49 1 6.1586 2.5088 0.8535 50 1 5.4628 1.7453 2.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101146643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:02 Heat of formation + Delta-G solvation = -89.950695 kcal Electronic energy + Delta-G solvation = -31065.195297 eV Core-core repulsion = 26900.218051 eV Total energy + Delta-G solvation = -4164.977246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14979 -39.53893 -38.33831 -37.59340 -35.75195 -34.00128 -33.27078 -31.72354 -31.61476 -31.16512 -27.97717 -27.16240 -26.98625 -26.09247 -25.00513 -23.94197 -22.62808 -21.25272 -19.89142 -19.49172 -19.23051 -18.24265 -17.62959 -16.77970 -16.45430 -16.04730 -15.68534 -15.55779 -15.22246 -15.12305 -14.84069 -14.49621 -14.28292 -13.98833 -13.80645 -13.48780 -13.27651 -13.10122 -13.02549 -12.95054 -12.66961 -12.58031 -12.41962 -12.29526 -12.14242 -11.94398 -11.83986 -11.57584 -11.45249 -11.31724 -11.09718 -10.90747 -10.78564 -10.67540 -10.60821 -10.31460 -9.99609 -9.74945 -9.57256 -8.99195 -8.64863 -8.20831 -8.12467 -6.33130 -3.84445 2.34354 2.39485 3.01083 3.05678 3.13767 3.54799 3.71433 3.86784 4.01246 4.08546 4.22180 4.35357 4.45826 4.52848 4.61990 4.82055 4.82750 4.91089 4.96219 5.00560 5.06237 5.14835 5.18563 5.26590 5.27417 5.29513 5.37652 5.39031 5.41468 5.44651 5.55185 5.58245 5.67620 5.68762 5.75330 5.77176 5.85385 5.90604 5.97930 6.03089 6.17855 6.30458 6.68231 6.96884 7.05475 7.22006 7.56379 7.90366 8.12172 8.58283 8.93213 9.40632 9.81434 10.79971 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.003176 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.873460 B = 8813.591144 C =10321.858969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.073 3.927 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.535 3.465 7 O -0.521 6.521 8 N -0.617 5.617 9 C 0.100 3.900 10 C -0.097 4.097 11 H 0.107 0.893 12 C 0.044 3.956 13 N -0.480 5.480 14 C 0.031 3.969 15 C 0.455 3.545 16 O -0.559 6.559 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.041 3.959 27 C -0.072 4.072 28 C -0.126 4.126 29 C 0.117 3.883 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -12.840 -16.635 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.011 3.989 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.323 3.677 7 O -0.395 6.395 8 N -0.353 5.353 9 C -0.024 4.024 10 C -0.116 4.116 11 H 0.125 0.875 12 C -0.083 4.083 13 N -0.203 5.203 14 C -0.101 4.101 15 C 0.240 3.760 16 O -0.441 6.441 17 N -0.232 5.232 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.705 3.295 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.087 4.087 27 C -0.074 4.074 28 C -0.184 4.184 29 C -0.005 4.005 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.179 -12.414 -16.622 23.109 hybrid contribution -1.140 -1.673 0.910 2.220 sum 9.039 -14.088 -15.712 22.957 Atomic orbital electron populations 1.22911 0.80301 1.03366 1.00302 1.88028 1.19904 1.24999 1.94958 1.21859 0.93214 0.86981 0.96810 0.89521 1.22280 1.03601 1.02323 0.94795 1.20010 0.85807 0.82479 0.79421 1.90727 1.69384 1.28975 1.50455 1.48603 1.21020 1.06389 1.59242 1.22327 1.00606 0.81311 0.98132 1.22848 0.95383 0.98226 0.95175 0.87522 1.23253 0.94074 1.03103 0.87920 1.65143 1.15030 1.37626 1.02489 1.22094 0.95411 0.96747 0.95808 1.19568 0.83351 0.89395 0.83669 1.90536 1.69766 1.34082 1.49702 1.42214 1.34860 1.15183 1.30903 1.19417 1.13892 0.93775 1.16190 0.86260 1.25029 0.96396 0.97283 0.97403 1.69625 1.22763 1.28330 1.31442 0.86690 0.78855 0.82727 0.81224 1.19559 1.20171 1.19600 1.23266 0.97076 0.93089 0.95316 1.22013 0.96442 0.93966 0.94947 1.21662 0.93803 1.01076 1.01829 1.22247 0.84422 0.97179 0.96679 0.93589 0.93691 0.89018 0.91022 0.90574 0.91104 0.90159 0.90781 0.87876 0.94508 0.93350 0.89117 0.79759 0.91619 0.93899 0.89760 0.90873 0.92403 0.92294 0.90733 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.36 9.89 -55.09 -0.54 -4.91 16 3 C 0.07 0.75 2.44 -27.88 -0.07 0.68 16 4 H 0.09 0.77 7.27 -51.93 -0.38 0.40 16 5 C -0.17 -1.29 9.38 37.16 0.35 -0.94 16 6 C 0.54 6.89 7.27 -10.99 -0.08 6.81 16 7 O -0.52 -8.88 16.75 -14.31 -0.24 -9.12 16 8 N -0.62 -6.50 3.34 -170.92 -0.57 -7.07 16 9 C 0.10 0.83 4.62 -3.26 -0.02 0.82 16 10 C -0.10 -0.97 3.72 -88.46 -0.33 -1.30 16 11 H 0.11 0.98 7.90 -51.93 -0.41 0.57 16 12 C 0.04 0.62 5.23 -2.25 -0.01 0.61 16 13 N -0.48 -7.32 5.06 -231.57 -1.17 -8.49 16 14 C 0.03 0.53 5.30 -4.98 -0.03 0.50 16 15 C 0.45 10.14 7.59 -10.99 -0.08 10.06 16 16 O -0.56 -14.46 14.41 5.55 0.08 -14.38 16 17 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 18 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 20 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 21 N -0.88 -25.56 13.96 55.50 0.77 -24.78 16 22 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 26 C 0.04 0.49 5.56 -2.24 -0.01 0.47 16 27 C -0.07 -0.70 1.07 -152.34 -0.16 -0.86 16 28 C -0.13 -1.03 8.53 37.16 0.32 -0.71 16 29 C 0.12 1.15 6.05 -2.79 -0.02 1.14 16 30 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.08 0.46 5.78 -51.93 -0.30 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.63 6.47 -51.93 -0.34 0.29 16 37 H 0.07 0.47 7.62 -51.93 -0.40 0.07 16 38 H 0.10 1.73 6.90 -51.93 -0.36 1.38 16 39 H 0.04 0.52 7.21 -51.92 -0.37 0.14 16 40 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 41 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 42 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 45 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 50 H 0.08 0.91 7.41 -51.93 -0.38 0.52 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -35.47 392.00 -7.95 -43.41 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -8.12 Total: 7.87 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 0.71 Total: 10.97 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.02 Total: -54.38 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.70 Total: -28.41 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.47 -7.95 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101146643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.538 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds